RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 NFE4Q86UQ8 179 aa11.47□□□□□ -0.57
PRPF40A-204ENST00000450303 CHTOPQ9Y3Y2 248 aaKnown RBP11.47□□□□□ -0.57
PRPF40A-204ENST00000450303 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.46□□□□□ -0.57
PRPF40A-204ENST00000450303 IGKV2-29A2NJV5 120 aaPredicted RBP11.46□□□□□ -0.57
PRPF40A-204ENST00000450303 CDK2AP2O75956 126 aa11.46□□□□□ -0.57
PRPF40A-204ENST00000450303 NMUP48645 174 aa11.46□□□□□ -0.57
PRPF40A-204ENST00000450303 STPG4Q8N801 248 aa11.46□□□□□ -0.57
PRPF40A-204ENST00000450303 TMEM101Q96IK0 257 aa11.46□□□□□ -0.57
PRPF40A-204ENST00000450303 ZNF25P17030 456 aaPredicted RBP11.45□□□□□ -0.58
PRPF40A-204ENST00000450303 DGAT2L7PQ6IED9 249 aa11.45□□□□□ -0.58
PRPF40A-204ENST00000450303 BOD1L2Q8IYS8 172 aa11.45□□□□□ -0.58
PRPF40A-204ENST00000450303 TIMM17AQ99595 171 aa11.45□□□□□ -0.58
PRPF40A-204ENST00000450303 MRPL35Q9NZE8 188 aaKnown RBP11.45□□□□□ -0.58
PRPF40A-204ENST00000450303 HSPG2P98160 4391 aa11.44□□□□□ -0.58
PRPF40A-204ENST00000450303 IGHV3-30P01768 117 aa11.44□□□□□ -0.58
PRPF40A-204ENST00000450303 IGHV3-33P01772 117 aa11.44□□□□□ -0.58
PRPF40A-204ENST00000450303 IGHV3-30-3P0DP02 117 aa11.44□□□□□ -0.58
PRPF40A-204ENST00000450303 IGHV3-30-5P0DP03 117 aa11.44□□□□□ -0.58
PRPF40A-204ENST00000450303 TIMM21Q9BVV7 248 aa11.44□□□□□ -0.58
PRPF40A-204ENST00000450303 DNAH5Q8TE73 4624 aa11.44□□□□□ -0.58
PRPF40A-204ENST00000450303 A0A087WTM6 91 aa11.43□□□□□ -0.58
PRPF40A-204ENST00000450303 A0A1B0GUV1 79 aa11.43□□□□□ -0.58
PRPF40A-204ENST00000450303 K7EP13 123 aa11.43□□□□□ -0.58
PRPF40A-204ENST00000450303 FGF6P10767 208 aa11.43□□□□□ -0.58
PRPF40A-204ENST00000450303 LINC01556Q5JQF7 62 aa11.43□□□□□ -0.58
PRPF40A-204ENST00000450303 ZC2HC1BQ5TFG8 222 aa11.43□□□□□ -0.58
PRPF40A-204ENST00000450303 C10orf126Q8N4M7 172 aa11.43□□□□□ -0.58
PRPF40A-204ENST00000450303 MAPKAPK5-AS1Q8N8E1 139 aa11.43□□□□□ -0.58
PRPF40A-204ENST00000450303 BAALCQ8WXS3 180 aa11.43□□□□□ -0.58
PRPF40A-204ENST00000450303 SPANXA1Q9NS26 97 aa11.43□□□□□ -0.58
PRPF40A-204ENST00000450303 RPL39P62891 51 aaKnown RBP11.42□□□□□ -0.58
PRPF40A-204ENST00000450303 PMVKQ15126 192 aa11.42□□□□□ -0.58
PRPF40A-204ENST00000450303 OR5A1Q8NGJ0 315 aa11.42□□□□□ -0.58
PRPF40A-204ENST00000450303 PGPEP1Q9NXJ5 209 aa11.42□□□□□ -0.58
PRPF40A-204ENST00000450303 CSDC2Q9Y534 153 aaKnown RBP11.42□□□□□ -0.58
PRPF40A-204ENST00000450303 HERVK_113P61574 105 aa11.41□□□□□ -0.58
PRPF40A-204ENST00000450303 RBX1P62877 108 aa11.41□□□□□ -0.58
PRPF40A-204ENST00000450303 HSD52Q0P140 79 aa11.41□□□□□ -0.58
PRPF40A-204ENST00000450303 Q9HAA7 133 aa11.41□□□□□ -0.58
PRPF40A-204ENST00000450303 UBE2D4Q9Y2X8 147 aa11.41□□□□□ -0.58
PRPF40A-204ENST00000450303 PYGO1Q9Y3Y4 419 aa11.41□□□□□ -0.58
PRPF40A-204ENST00000450303 APOBP04114 4563 aaKnown RBP11.4□□□□□ -0.58
PRPF40A-204ENST00000450303 ABCA13Q86UQ4 5058 aa11.4□□□□□ -0.58
PRPF40A-204ENST00000450303 SEC11AP67812 179 aa11.4□□□□□ -0.58
PRPF40A-204ENST00000450303 MPV17L2Q567V2 206 aa11.4□□□□□ -0.58
PRPF40A-204ENST00000450303 Q8N3U1 123 aa11.4□□□□□ -0.58
PRPF40A-204ENST00000450303 IGIPA6NJ69 53 aa11.39□□□□□ -0.59
PRPF40A-204ENST00000450303 IBA57-AS1B1ANH7 110 aa11.39□□□□□ -0.59
PRPF40A-204ENST00000450303 ANGP03950 147 aaKnown RBP11.39□□□□□ -0.59
PRPF40A-204ENST00000450303 NPSP0C0P6 89 aa11.39□□□□□ -0.59
PRPF40A-204ENST00000450303 BVES-AS1Q5T3Y7 98 aa11.39□□□□□ -0.59
PRPF40A-204ENST00000450303 HIGD1BQ9P298 99 aa11.39□□□□□ -0.59
PRPF40A-204ENST00000450303 A6NDN8 102 aa11.38□□□□□ -0.59
PRPF40A-204ENST00000450303 PSCAO43653 123 aa11.38□□□□□ -0.59
PRPF40A-204ENST00000450303 C2orf91Q6ZV80 131 aa11.38□□□□□ -0.59
PRPF40A-204ENST00000450303 MRPS36P82909 103 aaKnown RBP11.37□□□□□ -0.59
PRPF40A-204ENST00000450303 IGLV4-60A0A075B6I1 120 aa11.36□□□□□ -0.59
PRPF40A-204ENST00000450303 CRPP02741 224 aa11.36□□□□□ -0.59
PRPF40A-204ENST00000450303 PCP2Q8IVA1 136 aa11.36□□□□□ -0.59
PRPF40A-204ENST00000450303 CST9LQ9H4G1 147 aa11.36□□□□□ -0.59
PRPF40A-204ENST00000450303 CDC42SE2Q9NRR3 84 aa11.36□□□□□ -0.59
PRPF40A-204ENST00000450303 KLK12Q9UKR0 248 aa11.36□□□□□ -0.59
PRPF40A-204ENST00000450303 KRTAP10-1P60331 282 aa11.35□□□□□ -0.59
PRPF40A-204ENST00000450303 Q8N1X5 172 aa11.35□□□□□ -0.59
PRPF40A-204ENST00000450303 ORAOV1Q8WV07 137 aa11.35□□□□□ -0.59
PRPF40A-204ENST00000450303 VCX2Q9H322 139 aa11.35□□□□□ -0.59
PRPF40A-204ENST00000450303 IGLV4-3A0A075B6K6 122 aa11.34□□□□□ -0.59
PRPF40A-204ENST00000450303 LRCOL1A6NCL2 159 aa11.34□□□□□ -0.59
PRPF40A-204ENST00000450303 TP73-AS1Q9UF72 201 aa11.34□□□□□ -0.59
PRPF40A-204ENST00000450303 E9PLD3 99 aa11.33□□□□□ -0.6
PRPF40A-204ENST00000450303 Q6ZUT4 128 aa11.33□□□□□ -0.6
PRPF40A-204ENST00000450303 LINC00269Q8N2A0 174 aa11.33□□□□□ -0.6
PRPF40A-204ENST00000450303 COX11Q9Y6N1 276 aa11.33□□□□□ -0.6
PRPF40A-204ENST00000450303 IGKV2D-26A0A0A0MRZ7 120 aa11.32□□□□□ -0.6
PRPF40A-204ENST00000450303 TRAV8-3A0A0A6YYJ7 113 aa11.32□□□□□ -0.6
PRPF40A-204ENST00000450303 REG3AQ06141 175 aa11.32□□□□□ -0.6
PRPF40A-204ENST00000450303 TAL2Q16559 108 aa11.32□□□□□ -0.6
PRPF40A-204ENST00000450303 LINC00469Q8N7U9 141 aa11.32□□□□□ -0.6
PRPF40A-204ENST00000450303 UBE2WQ96B02 151 aa11.32□□□□□ -0.6
PRPF40A-204ENST00000450303 CHAC1Q9BUX1 264 aa11.32□□□□□ -0.6
PRPF40A-204ENST00000450303 C11orf86A6NJI1 115 aa11.31□□□□□ -0.6
PRPF40A-204ENST00000450303 CCL25O15444 150 aa11.31□□□□□ -0.6
PRPF40A-204ENST00000450303 GCSHP23434 173 aa11.31□□□□□ -0.6
PRPF40A-204ENST00000450303 XGP55808 180 aa11.31□□□□□ -0.6
PRPF40A-204ENST00000450303 RMI2Q96E14 147 aa11.31□□□□□ -0.6
PRPF40A-204ENST00000450303 OPRPNQ99935 248 aaPredicted RBP11.31□□□□□ -0.6
PRPF40A-204ENST00000450303 IGKV3OR2-268A0A0C4DH90 116 aa11.3□□□□□ -0.6
PRPF40A-204ENST00000450303 MYMXA0A1B0GTQ4 84 aa11.3□□□□□ -0.6
PRPF40A-204ENST00000450303 SS18Q15532 418 aa11.3□□□□□ -0.6
PRPF40A-204ENST00000450303 MIAQ16674 131 aa11.3□□□□□ -0.6
PRPF40A-204ENST00000450303 RNASE13Q5GAN3 156 aaKnown RBP11.3□□□□□ -0.6
PRPF40A-204ENST00000450303 PRR34Q9NV39 138 aa11.3□□□□□ -0.6
PRPF40A-204ENST00000450303 IGLV4-69A0A075B6H9 119 aa11.29□□□□□ -0.6
PRPF40A-204ENST00000450303 IGLV5-52A0A0A0MRZ9 124 aa11.29□□□□□ -0.6
PRPF40A-204ENST00000450303 TRAV8-4A0A0B4J246 113 aa11.29□□□□□ -0.6
PRPF40A-204ENST00000450303 WFDC2Q14508 124 aa11.29□□□□□ -0.6
PRPF40A-204ENST00000450303 TMEM170BQ5T4T1 132 aa11.29□□□□□ -0.6
PRPF40A-204ENST00000450303 CLPSL2Q6UWE3 100 aa11.29□□□□□ -0.6
PRPF40A-204ENST00000450303 Q8N814 137 aa11.29□□□□□ -0.6
PRPF40A-204ENST00000450303 AMELXQ99217 191 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms