RNA–Protein interactions for RNA: ENST00000433822.1

COL17A1-204, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 537 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-204ENST00000433822 VSIG2Q96IQ7 327 aa5.32□□□□□ -1.56
COL17A1-204ENST00000433822 CITED2Q99967 270 aaPredicted RBP5.32□□□□□ -1.56
COL17A1-204ENST00000433822 NAA38Q9BRA0 125 aaKnown RBP5.32□□□□□ -1.56
COL17A1-204ENST00000433822 VPS25Q9BRG1 176 aa5.32□□□□□ -1.56
COL17A1-204ENST00000433822 MRPL16Q9NX20 251 aaKnown RBP5.32□□□□□ -1.56
COL17A1-204ENST00000433822 IGLV5-39A0A0G2JS06 123 aa5.31□□□□□ -1.56
COL17A1-204ENST00000433822 TRBV6-4A0A1B0GX49 114 aa5.31□□□□□ -1.56
COL17A1-204ENST00000433822 EMP1P54849 157 aa5.31□□□□□ -1.56
COL17A1-204ENST00000433822 PROK1P58294 105 aa5.31□□□□□ -1.56
COL17A1-204ENST00000433822 OPRPNQ99935 248 aaPredicted RBP5.31□□□□□ -1.56
COL17A1-204ENST00000433822 YAE1D1Q9NRH1 226 aa5.31□□□□□ -1.56
COL17A1-204ENST00000433822 NDUFA1O15239 70 aa5.3□□□□□ -1.56
COL17A1-204ENST00000433822 SAP30O75446 220 aa5.3□□□□□ -1.56
COL17A1-204ENST00000433822 IGHV3-33P01772 117 aa5.3□□□□□ -1.56
COL17A1-204ENST00000433822 HTN1P15515 57 aa5.3□□□□□ -1.56
COL17A1-204ENST00000433822 INSL3P51460 131 aa5.3□□□□□ -1.56
COL17A1-204ENST00000433822 MIAQ16674 131 aa5.3□□□□□ -1.56
COL17A1-204ENST00000433822 COPS9Q8WXC6 57 aa5.3□□□□□ -1.56
COL17A1-204ENST00000433822 LITAFQ99732 161 aa5.3□□□□□ -1.56
COL17A1-204ENST00000433822 GEMIN7Q9H840 131 aaKnown RBP5.3□□□□□ -1.56
COL17A1-204ENST00000433822 XCL2Q9UBD3 114 aa5.3□□□□□ -1.56
COL17A1-204ENST00000433822 IGHV3-73A0A0B4J1V6 119 aa5.29□□□□□ -1.56
COL17A1-204ENST00000433822 TRBV30A0A0K0K1B3 111 aa5.29□□□□□ -1.56
COL17A1-204ENST00000433822 TEX48A0A1B0GUV7 120 aa5.29□□□□□ -1.56
COL17A1-204ENST00000433822 PLAC8L1A1L4L8 177 aa5.29□□□□□ -1.56
COL17A1-204ENST00000433822 A4D1N5 150 aa5.29□□□□□ -1.56
COL17A1-204ENST00000433822 GIG44P09565 113 aaPredicted RBP5.29□□□□□ -1.56
COL17A1-204ENST00000433822 PCP4P48539 62 aa5.29□□□□□ -1.56
COL17A1-204ENST00000433822 Q6ZUT4 128 aa5.29□□□□□ -1.56
COL17A1-204ENST00000433822 CSNK1G2-AS1Q8NCQ2 148 aa5.29□□□□□ -1.56
COL17A1-204ENST00000433822 NDUFA12Q9UI09 145 aa5.29□□□□□ -1.56
COL17A1-204ENST00000433822 TRGV1A0A0A0MS02 117 aa5.28□□□□□ -1.56
COL17A1-204ENST00000433822 APOMO95445 188 aa5.28□□□□□ -1.56
COL17A1-204ENST00000433822 LINC00694P0DN24 101 aa5.28□□□□□ -1.56
COL17A1-204ENST00000433822 SCGB1A1P11684 91 aa5.28□□□□□ -1.56
COL17A1-204ENST00000433822 HERV-K104P63124 156 aa5.28□□□□□ -1.56
COL17A1-204ENST00000433822 WFDC2Q14508 124 aa5.28□□□□□ -1.56
COL17A1-204ENST00000433822 RNF151Q2KHN1 245 aa5.28□□□□□ -1.56
COL17A1-204ENST00000433822 DGAT2L7PQ6IED9 249 aa5.28□□□□□ -1.56
COL17A1-204ENST00000433822 LINC00612Q8N6U2 182 aa5.28□□□□□ -1.56
COL17A1-204ENST00000433822 KIR2DL5BQ8NHK3 375 aa5.28□□□□□ -1.56
COL17A1-204ENST00000433822 ERG28Q9UKR5 140 aa5.28□□□□□ -1.56
COL17A1-204ENST00000433822 VWFP04275 2813 aa5.28□□□□□ -1.56
COL17A1-204ENST00000433822 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.27□□□□□ -1.57
COL17A1-204ENST00000433822 IGHV3OR16-12A0A075B7B8 117 aa5.27□□□□□ -1.57
COL17A1-204ENST00000433822 IGKV2-29A2NJV5 120 aaPredicted RBP5.27□□□□□ -1.57
COL17A1-204ENST00000433822 SMIM9A6NGZ8 99 aa5.27□□□□□ -1.57
COL17A1-204ENST00000433822 CIRBPQ14011 172 aaKnown RBP5.27□□□□□ -1.57
COL17A1-204ENST00000433822 SFTA2Q6UW10 78 aa5.27□□□□□ -1.57
COL17A1-204ENST00000433822 Q6ZTI0 123 aa5.27□□□□□ -1.57
COL17A1-204ENST00000433822 MUSTN1Q8IVN3 82 aa5.27□□□□□ -1.57
COL17A1-204ENST00000433822 TMEM243Q9BU79 118 aa5.27□□□□□ -1.57
COL17A1-204ENST00000433822 CDC42SE2Q9NRR3 84 aa5.27□□□□□ -1.57
COL17A1-204ENST00000433822 PRM2P04554 102 aa5.26□□□□□ -1.57
COL17A1-204ENST00000433822 ETDBQ3ZM63 59 aa5.26□□□□□ -1.57
COL17A1-204ENST00000433822 LINC00242Q5T6M2 205 aa5.26□□□□□ -1.57
COL17A1-204ENST00000433822 NTM-AS1Q6ZSK4 140 aa5.26□□□□□ -1.57
COL17A1-204ENST00000433822 TEN1Q86WV5 123 aa5.26□□□□□ -1.57
COL17A1-204ENST00000433822 CDIP1Q9H305 208 aa5.26□□□□□ -1.57
COL17A1-204ENST00000433822 Q9UF83 564 aa5.26□□□□□ -1.57
COL17A1-204ENST00000433822 CDKN2A-AS1Q9UH64 79 aa5.26□□□□□ -1.57
COL17A1-204ENST00000433822 TRAV8-3A0A0A6YYJ7 113 aa5.25□□□□□ -1.57
COL17A1-204ENST00000433822 LOC107984156A0A0G2JMH3 177 aa5.25□□□□□ -1.57
COL17A1-204ENST00000433822 A0A1W2PRX2 142 aa5.25□□□□□ -1.57
COL17A1-204ENST00000433822 SMIM1B2RUZ4 78 aa5.25□□□□□ -1.57
COL17A1-204ENST00000433822 TCL1BO95988 128 aa5.25□□□□□ -1.57
COL17A1-204ENST00000433822 FOXI1Q12951 378 aa5.25□□□□□ -1.57
COL17A1-204ENST00000433822 CEMP1Q6PRD7 247 aaPredicted RBP5.25□□□□□ -1.57
COL17A1-204ENST00000433822 ARL17AQ8IVW1 177 aa5.25□□□□□ -1.57
COL17A1-204ENST00000433822 LINC01561Q8N1V8 128 aa5.25□□□□□ -1.57
COL17A1-204ENST00000433822 DEFB104AQ8WTQ1 72 aa5.25□□□□□ -1.57
COL17A1-204ENST00000433822 PPDPFLQ8WWR9 84 aa5.25□□□□□ -1.57
COL17A1-204ENST00000433822 TMEM101Q96IK0 257 aa5.25□□□□□ -1.57
COL17A1-204ENST00000433822 NOP10Q9NPE3 64 aaKnown RBP5.25□□□□□ -1.57
COL17A1-204ENST00000433822 BIRC6Q9NR09 4857 aa5.25□□□□□ -1.57
COL17A1-204ENST00000433822 TRAV26-1A0A087WT03 109 aa5.24□□□□□ -1.57
COL17A1-204ENST00000433822 F5H768 121 aa5.24□□□□□ -1.57
COL17A1-204ENST00000433822 COX6CP09669 75 aa5.24□□□□□ -1.57
COL17A1-204ENST00000433822 SPINK8P0C7L1 97 aa5.24□□□□□ -1.57
COL17A1-204ENST00000433822 PSMB2P49721 201 aa5.24□□□□□ -1.57
COL17A1-204ENST00000433822 ATXN8Q156A1 80 aa5.24□□□□□ -1.57
COL17A1-204ENST00000433822 ZNF625Q96I27 306 aaPredicted RBP5.24□□□□□ -1.57
COL17A1-204ENST00000433822 EPPK1P58107 5090 aaKnown RBP5.24□□□□□ -1.57
COL17A1-204ENST00000433822 IGHV3-64A0A075B6Q5 118 aa5.23□□□□□ -1.57
COL17A1-204ENST00000433822 TRGV2A0A075B6R0 118 aa5.23□□□□□ -1.57
COL17A1-204ENST00000433822 TRBV6-8A0A0A6YYG3 113 aa5.23□□□□□ -1.57
COL17A1-204ENST00000433822 IGHV3-38A0A0C4DH36 116 aa5.23□□□□□ -1.57
COL17A1-204ENST00000433822 GAGE12HA6NDE8 117 aa5.23□□□□□ -1.57
COL17A1-204ENST00000433822 TMEM262E9PQX1 116 aa5.23□□□□□ -1.57
COL17A1-204ENST00000433822 H3BT86 120 aa5.23□□□□□ -1.57
COL17A1-204ENST00000433822 UBE2L6O14933 153 aa5.23□□□□□ -1.57
COL17A1-204ENST00000433822 SCGB1C2P0DMR2 95 aa5.23□□□□□ -1.57
COL17A1-204ENST00000433822 C9orf66Q5T8R8 295 aa5.23□□□□□ -1.57
COL17A1-204ENST00000433822 FAM222AQ5U5X8 452 aa5.23□□□□□ -1.57
COL17A1-204ENST00000433822 C11orf44Q8N8P7 122 aa5.23□□□□□ -1.57
COL17A1-204ENST00000433822 CMYA5Q8N3K9 4069 aa5.23□□□□□ -1.57
COL17A1-204ENST00000433822 TRGV4A0A0C4DH28 118 aa5.22□□□□□ -1.57
COL17A1-204ENST00000433822 TRBV10-2A0A0K0K1G8 114 aa5.22□□□□□ -1.57
COL17A1-204ENST00000433822 A0A1B0GUV1 79 aa5.22□□□□□ -1.57
COL17A1-204ENST00000433822 GAGE12JA6NER3 117 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms