RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 K7ERS5 55 aa10.69□□□□□ -0.7
PTPRU-204ENST00000428026 WFDC13Q8IUB5 93 aa10.69□□□□□ -0.7
PTPRU-204ENST00000428026 C14orf177Q52M58 125 aa10.68□□□□□ -0.7
PTPRU-204ENST00000428026 FAM19A3Q7Z5A8 133 aa10.68□□□□□ -0.7
PTPRU-204ENST00000428026 POM121L12Q8N7R1 296 aa10.68□□□□□ -0.7
PTPRU-204ENST00000428026 A0A087WZ39 114 aa10.68□□□□□ -0.7
PTPRU-204ENST00000428026 FAM19A5Q7Z5A7 132 aaPredicted RBP10.68□□□□□ -0.7
PTPRU-204ENST00000428026 PYGO1Q9Y3Y4 419 aa10.68□□□□□ -0.7
PTPRU-204ENST00000428026 IGKV2-28A0A075B6P5 120 aa10.68□□□□□ -0.7
PTPRU-204ENST00000428026 LRCOL1A6NCL2 159 aa10.68□□□□□ -0.7
PTPRU-204ENST00000428026 IGKV2D-28P01615 120 aa10.68□□□□□ -0.7
PTPRU-204ENST00000428026 NDUFC1O43677 76 aa10.68□□□□□ -0.7
PTPRU-204ENST00000428026 CRIP2P52943 208 aaPredicted RBP10.68□□□□□ -0.7
PTPRU-204ENST00000428026 LY6LH3BQJ8 138 aa10.67□□□□□ -0.7
PTPRU-204ENST00000428026 Q6ZSV7 163 aa10.67□□□□□ -0.7
PTPRU-204ENST00000428026 CEP350Q5VT06 3117 aa10.67□□□□□ -0.7
PTPRU-204ENST00000428026 LOC100131303A0A0U1RQF7 123 aa10.66□□□□□ -0.7
PTPRU-204ENST00000428026 UBE2D4Q9Y2X8 147 aa10.66□□□□□ -0.7
PTPRU-204ENST00000428026 CRYGDP07320 174 aa10.66□□□□□ -0.7
PTPRU-204ENST00000428026 A6NED7 52 aa10.66□□□□□ -0.7
PTPRU-204ENST00000428026 FSTL3O95633 263 aa10.65□□□□□ -0.7
PTPRU-204ENST00000428026 POLR2KP53803 58 aaKnown RBP10.65□□□□□ -0.7
PTPRU-204ENST00000428026 ARHGAP32A7KAX9 2087 aa10.65□□□□□ -0.7
PTPRU-204ENST00000428026 ABCA12Q86UK0 2595 aa10.65□□□□□ -0.7
PTPRU-204ENST00000428026 A0A087WVE0 104 aa10.65□□□□□ -0.7
PTPRU-204ENST00000428026 EPG5Q9HCE0 2579 aa10.65□□□□□ -0.7
PTPRU-204ENST00000428026 COL5A1P20908 1838 aaPredicted RBP10.64□□□□□ -0.71
PTPRU-204ENST00000428026 LINC00482Q8N8I6 264 aa10.64□□□□□ -0.71
PTPRU-204ENST00000428026 FAM30AQ9NZY2 134 aa10.64□□□□□ -0.71
PTPRU-204ENST00000428026 SMIM9A6NGZ8 99 aa10.64□□□□□ -0.71
PTPRU-204ENST00000428026 USP9XQ93008 2570 aaPredicted RBP10.64□□□□□ -0.71
PTPRU-204ENST00000428026 LYRM9A8MSI8 78 aa10.63□□□□□ -0.71
PTPRU-204ENST00000428026 PRR15LQ9BU68 103 aa10.63□□□□□ -0.71
PTPRU-204ENST00000428026 PPDPFQ9H3Y8 114 aa10.63□□□□□ -0.71
PTPRU-204ENST00000428026 KIR2DL5BQ8NHK3 375 aa10.63□□□□□ -0.71
PTPRU-204ENST00000428026 UBE2D1P51668 147 aa10.62□□□□□ -0.71
PTPRU-204ENST00000428026 EBI3Q14213 229 aa10.62□□□□□ -0.71
PTPRU-204ENST00000428026 TRBV6-4A0A1B0GX49 114 aa10.62□□□□□ -0.71
PTPRU-204ENST00000428026 SOSTDC1Q6X4U4 206 aa10.62□□□□□ -0.71
PTPRU-204ENST00000428026 A0A1W2PPR1 153 aa10.61□□□□□ -0.71
PTPRU-204ENST00000428026 CELA1Q9UNI1 258 aa10.61□□□□□ -0.71
PTPRU-204ENST00000428026 Q6JHZ5 121 aa10.61□□□□□ -0.71
PTPRU-204ENST00000428026 SHISA2Q6UWI4 295 aa10.61□□□□□ -0.71
PTPRU-204ENST00000428026 Q6Q795 121 aa10.61□□□□□ -0.71
PTPRU-204ENST00000428026 LRRK2Q5S007 2527 aa10.61□□□□□ -0.71
PTPRU-204ENST00000428026 HCFC1P51610 2035 aa10.61□□□□□ -0.71
PTPRU-204ENST00000428026 USP9YO00507 2555 aaPredicted RBP10.6□□□□□ -0.71
PTPRU-204ENST00000428026 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.6□□□□□ -0.71
PTPRU-204ENST00000428026 DEFB131BA0A096LNP1 70 aa10.6□□□□□ -0.71
PTPRU-204ENST00000428026 SMIM26A0A096LP01 95 aa10.6□□□□□ -0.71
PTPRU-204ENST00000428026 C9orf85Q96MD7 179 aa10.6□□□□□ -0.71
PTPRU-204ENST00000428026 IGIPA6NJ69 53 aa10.6□□□□□ -0.71
PTPRU-204ENST00000428026 SYCNQ0VAF6 134 aa10.59□□□□□ -0.71
PTPRU-204ENST00000428026 LINC00959A0A1B0GUT2 108 aa10.59□□□□□ -0.71
PTPRU-204ENST00000428026 WFDC10AQ9H1F0 79 aa10.59□□□□□ -0.71
PTPRU-204ENST00000428026 KLLNB2CW77 178 aa10.59□□□□□ -0.71
PTPRU-204ENST00000428026 TSPEAR-AS2P59090 65 aa10.59□□□□□ -0.71
PTPRU-204ENST00000428026 AVPP01185 164 aa10.58□□□□□ -0.72
PTPRU-204ENST00000428026 MIFP14174 115 aa10.58□□□□□ -0.72
PTPRU-204ENST00000428026 MRPS36P82909 103 aaKnown RBP10.58□□□□□ -0.72
PTPRU-204ENST00000428026 SPINK6Q6UWN8 80 aa10.58□□□□□ -0.72
PTPRU-204ENST00000428026 LINC01006Q8NI28 216 aa10.58□□□□□ -0.72
PTPRU-204ENST00000428026 CD164L2Q6UWJ8 174 aa10.58□□□□□ -0.72
PTPRU-204ENST00000428026 RPL37AP8A6NKH3 93 aa10.57□□□□□ -0.72
PTPRU-204ENST00000428026 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.57□□□□□ -0.72
PTPRU-204ENST00000428026 IGHV4-30-4P0DP06 118 aa10.56□□□□□ -0.72
PTPRU-204ENST00000428026 HILS1P60008 231 aa10.56□□□□□ -0.72
PTPRU-204ENST00000428026 C18orf65Q6ZTR6 163 aa10.56□□□□□ -0.72
PTPRU-204ENST00000428026 IGLV4-69A0A075B6H9 119 aa10.56□□□□□ -0.72
PTPRU-204ENST00000428026 CNFNQ9BYD5 112 aa10.56□□□□□ -0.72
PTPRU-204ENST00000428026 NANOS2P60321 138 aaKnown RBP10.55□□□□□ -0.72
PTPRU-204ENST00000428026 Q8N9L7 120 aa10.55□□□□□ -0.72
PTPRU-204ENST00000428026 IL17DQ8TAD2 202 aa10.55□□□□□ -0.72
PTPRU-204ENST00000428026 ZNF580Q9UK33 172 aa10.55□□□□□ -0.72
PTPRU-204ENST00000428026 SETD2Q9BYW2 2564 aaPredicted RBP10.55□□□□□ -0.72
PTPRU-204ENST00000428026 M0R378 163 aa10.54□□□□□ -0.72
PTPRU-204ENST00000428026 ZNF73O43830 326 aaPredicted RBP10.54□□□□□ -0.72
PTPRU-204ENST00000428026 NTM-AS1Q6ZSK4 140 aa10.54□□□□□ -0.72
PTPRU-204ENST00000428026 ZNF702PQ9H963 129 aa10.54□□□□□ -0.72
PTPRU-204ENST00000428026 EDN2P20800 178 aa10.54□□□□□ -0.72
PTPRU-204ENST00000428026 Q8N6K4 173 aa10.54□□□□□ -0.72
PTPRU-204ENST00000428026 PKD1L2Q7Z442 2459 aa10.54□□□□□ -0.72
PTPRU-204ENST00000428026 A0A087WYN8 130 aa10.53□□□□□ -0.72
PTPRU-204ENST00000428026 UBE2D3P61077 147 aa10.53□□□□□ -0.72
PTPRU-204ENST00000428026 UBE2D2P62837 147 aa10.53□□□□□ -0.72
PTPRU-204ENST00000428026 LINC00242Q5T6M2 205 aa10.53□□□□□ -0.72
PTPRU-204ENST00000428026 CDC42SE2Q9NRR3 84 aa10.53□□□□□ -0.72
PTPRU-204ENST00000428026 ADAMTSL4-AS1Q5T5F5 129 aa10.53□□□□□ -0.72
PTPRU-204ENST00000428026 PRR3P79522 188 aaKnown RBP10.52□□□□□ -0.72
PTPRU-204ENST00000428026 SERP1Q9Y6X1 66 aa10.52□□□□□ -0.72
PTPRU-204ENST00000428026 A0A096LNJ9 63 aa10.52□□□□□ -0.73
PTPRU-204ENST00000428026 DHRS4-AS1Q9P1J3 65 aa10.52□□□□□ -0.73
PTPRU-204ENST00000428026 LOC107984640A0A0U1RRK4 108 aa10.52□□□□□ -0.73
PTPRU-204ENST00000428026 TRAV7A0A075B6U4 112 aa10.52□□□□□ -0.73
PTPRU-204ENST00000428026 COX6A2Q02221 97 aa10.51□□□□□ -0.73
PTPRU-204ENST00000428026 PSMG3-AS1Q96PY0 264 aa10.51□□□□□ -0.73
PTPRU-204ENST00000428026 EML5Q05BV3 1969 aa10.51□□□□□ -0.73
PTPRU-204ENST00000428026 C9orf116Q5BN46 136 aaPredicted RBP10.51□□□□□ -0.73
PTPRU-204ENST00000428026 PCNTO95613 3336 aa10.5□□□□□ -0.73
PTPRU-204ENST00000428026 SMIM1B2RUZ4 78 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 87.9 ms