RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.85□□□□□ -1.15
LIMS1-207ENST00000422797 DNAL4O96015 105 aa7.85□□□□□ -1.15
LIMS1-207ENST00000422797 LINC00694P0DN24 101 aa7.85□□□□□ -1.15
LIMS1-207ENST00000422797 MALP21145 153 aa7.85□□□□□ -1.15
LIMS1-207ENST00000422797 NTM-AS1Q6ZSK4 140 aa7.85□□□□□ -1.15
LIMS1-207ENST00000422797 NBASA2RRP1 2371 aa7.85□□□□□ -1.15
LIMS1-207ENST00000422797 IBA57-AS1B1ANH7 110 aa7.84□□□□□ -1.15
LIMS1-207ENST00000422797 KHDC1LQ5JSQ8 128 aa7.84□□□□□ -1.15
LIMS1-207ENST00000422797 SPTAN1Q13813 2472 aaKnown RBP7.83□□□□□ -1.16
LIMS1-207ENST00000422797 FAM236AA0A1B0GUQ0 79 aa7.83□□□□□ -1.16
LIMS1-207ENST00000422797 FAM236BA0A1B0GV22 79 aa7.83□□□□□ -1.16
LIMS1-207ENST00000422797 C18orf65Q6ZTR6 163 aa7.83□□□□□ -1.16
LIMS1-207ENST00000422797 UQCRQO14949 82 aa7.83□□□□□ -1.16
LIMS1-207ENST00000422797 PRM2P04554 102 aa7.83□□□□□ -1.16
LIMS1-207ENST00000422797 XP32Q5T750 250 aa7.83□□□□□ -1.16
LIMS1-207ENST00000422797 C5orf38Q86SI9 138 aa7.83□□□□□ -1.16
LIMS1-207ENST00000422797 SND1-IT1Q9HBX3 110 aa7.83□□□□□ -1.16
LIMS1-207ENST00000422797 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.82□□□□□ -1.16
LIMS1-207ENST00000422797 Q6ZTI0 123 aa7.82□□□□□ -1.16
LIMS1-207ENST00000422797 LINC01561Q8N1V8 128 aa7.82□□□□□ -1.16
LIMS1-207ENST00000422797 C3orf22Q8N5N4 141 aa7.82□□□□□ -1.16
LIMS1-207ENST00000422797 TEX15Q9BXT5 2789 aa7.82□□□□□ -1.16
LIMS1-207ENST00000422797 UBR5O95071 2799 aaPredicted RBP7.81□□□□□ -1.16
LIMS1-207ENST00000422797 A0A1B0GX51 115 aa7.81□□□□□ -1.16
LIMS1-207ENST00000422797 ATOX1O00244 68 aa7.81□□□□□ -1.16
LIMS1-207ENST00000422797 C11orf44Q8N8P7 122 aa7.81□□□□□ -1.16
LIMS1-207ENST00000422797 CHCHD5Q9BSY4 110 aa7.81□□□□□ -1.16
LIMS1-207ENST00000422797 MYO9AB2RTY4 2548 aa7.81□□□□□ -1.16
LIMS1-207ENST00000422797 AKAP6Q13023 2319 aa7.8□□□□□ -1.16
LIMS1-207ENST00000422797 A0A0U1RRA0 63 aa7.8□□□□□ -1.16
LIMS1-207ENST00000422797 MIR7-3HGQ8N6C7 128 aa7.8□□□□□ -1.16
LIMS1-207ENST00000422797 TRGV2A0A075B6R0 118 aa7.79□□□□□ -1.16
LIMS1-207ENST00000422797 A0A087WZ39 114 aa7.79□□□□□ -1.16
LIMS1-207ENST00000422797 GAGE2AQ6NT46 116 aa7.79□□□□□ -1.16
LIMS1-207ENST00000422797 KRTAP1-3Q8IUG1 177 aa7.79□□□□□ -1.16
LIMS1-207ENST00000422797 LINC00526Q96FQ7 95 aa7.79□□□□□ -1.16
LIMS1-207ENST00000422797 OBSCN-AS1Q96MR7 158 aa7.79□□□□□ -1.16
LIMS1-207ENST00000422797 CCL24O00175 119 aa7.78□□□□□ -1.16
LIMS1-207ENST00000422797 NDUFA7O95182 113 aa7.78□□□□□ -1.16
LIMS1-207ENST00000422797 LINC00158P58513 81 aa7.78□□□□□ -1.16
LIMS1-207ENST00000422797 C9orf153Q5TBE3 101 aa7.78□□□□□ -1.16
LIMS1-207ENST00000422797 Q6JHZ5 121 aa7.78□□□□□ -1.16
LIMS1-207ENST00000422797 SMCR5Q8TEV8 140 aa7.78□□□□□ -1.16
LIMS1-207ENST00000422797 Q96MF0 132 aa7.78□□□□□ -1.16
LIMS1-207ENST00000422797 FAM218AQ96MZ4 157 aa7.78□□□□□ -1.16
LIMS1-207ENST00000422797 KRTAP9-2Q9BYQ4 174 aa7.78□□□□□ -1.16
LIMS1-207ENST00000422797 NOP10Q9NPE3 64 aaKnown RBP7.78□□□□□ -1.16
LIMS1-207ENST00000422797 C22orf24Q9Y442 160 aa7.78□□□□□ -1.16
LIMS1-207ENST00000422797 IGKV2-28A0A075B6P5 120 aa7.78□□□□□ -1.16
LIMS1-207ENST00000422797 TRBV6-8A0A0A6YYG3 113 aa7.78□□□□□ -1.16
LIMS1-207ENST00000422797 IGHV3OR16-9A0A0B4J2B5 98 aa7.78□□□□□ -1.16
LIMS1-207ENST00000422797 TRGV4A0A0C4DH28 118 aa7.78□□□□□ -1.16
LIMS1-207ENST00000422797 A0A1W2PRX2 142 aa7.78□□□□□ -1.16
LIMS1-207ENST00000422797 IGKV2D-28P01615 120 aa7.78□□□□□ -1.16
LIMS1-207ENST00000422797 HIST1H4AP62805 103 aaKnown RBP7.78□□□□□ -1.16
LIMS1-207ENST00000422797 DEFB113Q30KQ7 82 aa7.78□□□□□ -1.16
LIMS1-207ENST00000422797 S100A7L2Q5SY68 101 aa7.78□□□□□ -1.16
LIMS1-207ENST00000422797 LINC00337Q8N6G1 96 aa7.78□□□□□ -1.16
LIMS1-207ENST00000422797 LY6G6DO95868 133 aa7.77□□□□□ -1.17
LIMS1-207ENST00000422797 SMIM11BQ8TCY0 68 aa7.77□□□□□ -1.17
LIMS1-207ENST00000422797 NRGNQ92686 78 aa7.77□□□□□ -1.17
LIMS1-207ENST00000422797 TEP1Q99973 2627 aaKnown RBP7.76□□□□□ -1.17
LIMS1-207ENST00000422797 COX7CP15954 63 aa7.76□□□□□ -1.17
LIMS1-207ENST00000422797 CCL18P55774 89 aa7.76□□□□□ -1.17
LIMS1-207ENST00000422797 ATP5EP2Q5VTU8 51 aa7.76□□□□□ -1.17
LIMS1-207ENST00000422797 KLK5Q9Y337 293 aaPredicted RBP7.76□□□□□ -1.17
LIMS1-207ENST00000422797 CSMD1Q96PZ7 3565 aa7.76□□□□□ -1.17
LIMS1-207ENST00000422797 DOPEY1Q5JWR5 2465 aa7.75□□□□□ -1.17
LIMS1-207ENST00000422797 KRTAP9-6A0A140TA67 174 aa7.75□□□□□ -1.17
LIMS1-207ENST00000422797 PLAC8L1A1L4L8 177 aa7.75□□□□□ -1.17
LIMS1-207ENST00000422797 SMIM20Q8N5G0 67 aa7.75□□□□□ -1.17
LIMS1-207ENST00000422797 MAPK1IP1LQ8NDC0 245 aa7.75□□□□□ -1.17
LIMS1-207ENST00000422797 TOMM7Q9P0U1 55 aa7.75□□□□□ -1.17
LIMS1-207ENST00000422797 ANKRD17O75179 2603 aaKnown RBP7.74□□□□□ -1.17
LIMS1-207ENST00000422797 JMJD7-PLA2G4BH0Y9G9 81 aa7.74□□□□□ -1.17
LIMS1-207ENST00000422797 CRYGAP11844 174 aa7.74□□□□□ -1.17
LIMS1-207ENST00000422797 Q8IZM0 81 aa7.74□□□□□ -1.17
LIMS1-207ENST00000422797 ORMDL1Q9P0S3 153 aa7.74□□□□□ -1.17
LIMS1-207ENST00000422797 PAX4O43316 350 aa7.73□□□□□ -1.17
LIMS1-207ENST00000422797 LORP23490 312 aaPredicted RBP7.73□□□□□ -1.17
LIMS1-207ENST00000422797 SS18Q15532 418 aa7.73□□□□□ -1.17
LIMS1-207ENST00000422797 MUC7Q8TAX7 377 aa7.73□□□□□ -1.17
LIMS1-207ENST00000422797 LINC00167Q96N53 147 aa7.73□□□□□ -1.17
LIMS1-207ENST00000422797 Q9HAA7 133 aa7.73□□□□□ -1.17
LIMS1-207ENST00000422797 COL12A1Q99715 3063 aa7.73□□□□□ -1.17
LIMS1-207ENST00000422797 LRRK2Q5S007 2527 aa7.73□□□□□ -1.17
LIMS1-207ENST00000422797 A0A087WYN8 130 aa7.73□□□□□ -1.17
LIMS1-207ENST00000422797 A0A1B0GUV1 79 aa7.73□□□□□ -1.17
LIMS1-207ENST00000422797 NDUFC2O95298 119 aa7.73□□□□□ -1.17
LIMS1-207ENST00000422797 GIG44P09565 113 aaPredicted RBP7.73□□□□□ -1.17
LIMS1-207ENST00000422797 RPL18AQ02543 176 aaKnown RBP7.73□□□□□ -1.17
LIMS1-207ENST00000422797 COX17Q14061 63 aa7.73□□□□□ -1.17
LIMS1-207ENST00000422797 FHL2Q14192 279 aa7.73□□□□□ -1.17
LIMS1-207ENST00000422797 KIR2DL5BQ8NHK3 375 aa7.73□□□□□ -1.17
LIMS1-207ENST00000422797 C16orf95Q9H693 158 aa7.73□□□□□ -1.17
LIMS1-207ENST00000422797 NOTCH2Q04721 2471 aa7.72□□□□□ -1.17
LIMS1-207ENST00000422797 FLNCQ14315 2725 aa7.72□□□□□ -1.17
LIMS1-207ENST00000422797 LINC00959A0A1B0GUT2 108 aa7.72□□□□□ -1.17
LIMS1-207ENST00000422797 DNAJC9-AS1A6NH13 148 aa7.72□□□□□ -1.17
LIMS1-207ENST00000422797 IGLV1-51P01701 117 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms