RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 KRTAP10-9P60411 292 aa15.14■□□□□ 0.01
USP48-205ENST00000421625 APCP25054 2843 aa15.14■□□□□ 0.01
USP48-205ENST00000421625 UQCRQO14949 82 aa15.14■□□□□ 0.01
USP48-205ENST00000421625 MALP21145 153 aa15.14■□□□□ 0.01
USP48-205ENST00000421625 CDC42SE2Q9NRR3 84 aa15.14■□□□□ 0.01
USP48-205ENST00000421625 LINC00337Q8N6G1 96 aa15.13■□□□□ 0.01
USP48-205ENST00000421625 C2CD3Q4AC94 2353 aa15.13■□□□□ 0.01
USP48-205ENST00000421625 C9orf129Q5T035 196 aaKnown RBP15.13■□□□□ 0.01
USP48-205ENST00000421625 INAFM2P0DMQ5 153 aa15.12■□□□□ 0.01
USP48-205ENST00000421625 CSDC2Q9Y534 153 aaKnown RBP15.12■□□□□ 0.01
USP48-205ENST00000421625 LINC00526Q96FQ7 95 aa15.12■□□□□ 0.01
USP48-205ENST00000421625 CRPP02741 224 aa15.11■□□□□ 0.01
USP48-205ENST00000421625 CXCL5P42830 114 aa15.11■□□□□ 0.01
USP48-205ENST00000421625 RPL28P46779 137 aaKnown RBP15.11■□□□□ 0.01
USP48-205ENST00000421625 RPL36AP83881 106 aaKnown RBP15.11■□□□□ 0.01
USP48-205ENST00000421625 RPL36ALQ969Q0 106 aaKnown RBP15.11■□□□□ 0.01
USP48-205ENST00000421625 IGKV2-28A0A075B6P5 120 aa15.11■□□□□ 0.01
USP48-205ENST00000421625 IGKV2D-28P01615 120 aa15.11■□□□□ 0.01
USP48-205ENST00000421625 MIR7-3HGQ8N6C7 128 aa15.1■□□□□ 0.01
USP48-205ENST00000421625 ZNF469Q96JG9 3925 aaPredicted RBP15.1■□□□□ 0.01
USP48-205ENST00000421625 A0A087WYN8 130 aa15.1■□□□□ 0.01
USP48-205ENST00000421625 K7EQD1 137 aa15.1■□□□□ 0.01
USP48-205ENST00000421625 SONP18583 2426 aaKnown RBP15.09■□□□□ 0.01
USP48-205ENST00000421625 TRAV13-2A0A0B4J235 113 aa15.09■□□□□ 0.01
USP48-205ENST00000421625 Q6ZTI0 123 aa15.09■□□□□ 0.01
USP48-205ENST00000421625 DYNLRB2Q8TF09 96 aa15.09■□□□□ 0.01
USP48-205ENST00000421625 ATP5G1P05496 136 aa15.08■□□□□ 0
USP48-205ENST00000421625 C1orf158Q8N1D5 194 aa15.08■□□□□ 0
USP48-205ENST00000421625 SND1-IT1Q9HBX3 110 aa15.07■□□□□ 0
USP48-205ENST00000421625 HELZ2Q9BYK8 2649 aaKnown RBP15.07■□□□□ 0
USP48-205ENST00000421625 C2orf48Q96LS8 159 aa15.07■□□□□ 0
USP48-205ENST00000421625 C14orf132Q9NPU4 83 aa15.07■□□□□ 0
USP48-205ENST00000421625 KHDC1LQ5JSQ8 128 aa15.07■□□□□ 0
USP48-205ENST00000421625 SMIM11BQ8TCY0 68 aa15.07■□□□□ 0
USP48-205ENST00000421625 TOMM7Q9P0U1 55 aa15.07■□□□□ 0
USP48-205ENST00000421625 COX7CP15954 63 aa15.06■□□□□ 0
USP48-205ENST00000421625 LINC01356Q8N9X3 169 aa15.06■□□□□ 0
USP48-205ENST00000421625 PF4P02776 101 aa15.06■□□□□ 0
USP48-205ENST00000421625 IL17DQ8TAD2 202 aa15.06■□□□□ 0
USP48-205ENST00000421625 DEFB114Q30KQ6 69 aa15.05■□□□□ -0
USP48-205ENST00000421625 IGKV3OR2-268A0A0C4DH90 116 aa15.04■□□□□ -0
USP48-205ENST00000421625 DNAL4O96015 105 aa15.04■□□□□ -0
USP48-205ENST00000421625 HIST1H4AP62805 103 aaKnown RBP15.04■□□□□ -0
USP48-205ENST00000421625 COX7B2Q8TF08 81 aa15.04■□□□□ -0
USP48-205ENST00000421625 NOTCH3Q9UM47 2321 aa15.04■□□□□ -0
USP48-205ENST00000421625 TRBV10-1A0A0K0K1A3 114 aa15.04■□□□□ -0
USP48-205ENST00000421625 UBE2L6O14933 153 aa15.03■□□□□ -0
USP48-205ENST00000421625 MYO9AB2RTY4 2548 aa15.03■□□□□ -0
USP48-205ENST00000421625 ODF3L2Q3SX64 289 aa15.03■□□□□ -0
USP48-205ENST00000421625 Q6YL49 198 aa15.03■□□□□ -0
USP48-205ENST00000421625 IGKV3D-7A0A0C4DH55 119 aa15.02■□□□□ -0
USP48-205ENST00000421625 LINC00158P58513 81 aa15.02■□□□□ -0
USP48-205ENST00000421625 TMEM243Q9BU79 118 aa15.02■□□□□ -0
USP48-205ENST00000421625 AKAP9Q99996 3911 aa15.01□□□□□ -0.01
USP48-205ENST00000421625 LOC100131303A0A0U1RQF7 123 aa15.01□□□□□ -0.01
USP48-205ENST00000421625 CCL18P55774 89 aa15□□□□□ -0.01
USP48-205ENST00000421625 STHQ8IWL8 128 aa15□□□□□ -0.01
USP48-205ENST00000421625 CYSTM1Q9H1C7 97 aa15□□□□□ -0.01
USP48-205ENST00000421625 LINC00846Q9NV44 126 aa15□□□□□ -0.01
USP48-205ENST00000421625 ITPR3Q14573 2671 aa14.99□□□□□ -0.01
USP48-205ENST00000421625 hADV29S1A0JD25 119 aa14.99□□□□□ -0.01
USP48-205ENST00000421625 ATOX1O00244 68 aa14.99□□□□□ -0.01
USP48-205ENST00000421625 ITPR2Q14571 2701 aa14.98□□□□□ -0.01
USP48-205ENST00000421625 A0A096LNT2 108 aa14.98□□□□□ -0.01
USP48-205ENST00000421625 LECT2O14960 151 aa14.98□□□□□ -0.01
USP48-205ENST00000421625 LRRC75A-AS1Q8N1F1 130 aa14.98□□□□□ -0.01
USP48-205ENST00000421625 OVOL2Q9BRP0 275 aa14.98□□□□□ -0.01
USP48-205ENST00000421625 NOP10Q9NPE3 64 aaKnown RBP14.98□□□□□ -0.01
USP48-205ENST00000421625 CRYGAP11844 174 aa14.98□□□□□ -0.01
USP48-205ENST00000421625 DSCR9P59020 149 aa14.98□□□□□ -0.01
USP48-205ENST00000421625 C4orf3Q8WVX3 66 aa14.98□□□□□ -0.01
USP48-205ENST00000421625 WNK1Q9H4A3 2382 aa14.97□□□□□ -0.01
USP48-205ENST00000421625 ACANP16112 2415 aa14.97□□□□□ -0.01
USP48-205ENST00000421625 NCR3O14931 201 aa14.97□□□□□ -0.01
USP48-205ENST00000421625 SLPIP03973 132 aa14.97□□□□□ -0.01
USP48-205ENST00000421625 A0A087WVE0 104 aa14.97□□□□□ -0.01
USP48-205ENST00000421625 FLNAP21333 2647 aaKnown RBP14.96□□□□□ -0.01
USP48-205ENST00000421625 PFN2P35080 140 aa14.96□□□□□ -0.01
USP48-205ENST00000421625 FAM19A5Q7Z5A7 132 aaPredicted RBP14.96□□□□□ -0.02
USP48-205ENST00000421625 OBSCN-AS1Q96MR7 158 aa14.96□□□□□ -0.02
USP48-205ENST00000421625 J3QLI3 93 aa14.95□□□□□ -0.02
USP48-205ENST00000421625 RPL18AQ02543 176 aaKnown RBP14.95□□□□□ -0.02
USP48-205ENST00000421625 IGLV4-60A0A075B6I1 120 aa14.94□□□□□ -0.02
USP48-205ENST00000421625 A0A1B0GX51 115 aa14.94□□□□□ -0.02
USP48-205ENST00000421625 H0YGX0 51 aa14.93□□□□□ -0.02
USP48-205ENST00000421625 SETD2Q9BYW2 2564 aaPredicted RBP14.93□□□□□ -0.02
USP48-205ENST00000421625 Q6JHZ5 121 aa14.93□□□□□ -0.02
USP48-205ENST00000421625 OR13C6PQ8NH95 151 aa14.93□□□□□ -0.02
USP48-205ENST00000421625 NF1P21359 2839 aa14.93□□□□□ -0.02
USP48-205ENST00000421625 C5orf47Q569G3 176 aa14.93□□□□□ -0.02
USP48-205ENST00000421625 SMIM9A6NGZ8 99 aa14.92□□□□□ -0.02
USP48-205ENST00000421625 FSHBP01225 129 aa14.92□□□□□ -0.02
USP48-205ENST00000421625 J3KT08 172 aa14.92□□□□□ -0.02
USP48-205ENST00000421625 PAX4O43316 350 aa14.92□□□□□ -0.02
USP48-205ENST00000421625 IGHV3OR16-9A0A0B4J2B5 98 aa14.91□□□□□ -0.02
USP48-205ENST00000421625 DEFB113Q30KQ7 82 aa14.91□□□□□ -0.02
USP48-205ENST00000421625 C11orf68Q9H3H3 251 aaKnown RBP14.91□□□□□ -0.02
USP48-205ENST00000421625 CR1P17927 2039 aa14.9□□□□□ -0.02
USP48-205ENST00000421625 NOTCH2Q04721 2471 aa14.9□□□□□ -0.02
USP48-205ENST00000421625 LINC01561Q8N1V8 128 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms