RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 CHD8Q9HCK8 2581 aa12.54□□□□□ -0.4
PHRF1-202ENST00000413872 LINC00643Q86TS7 51 aa12.54□□□□□ -0.4
PHRF1-202ENST00000413872 TRBV30A0A0K0K1B3 111 aa12.53□□□□□ -0.4
PHRF1-202ENST00000413872 DHRS4-AS1Q9P1J3 65 aa12.53□□□□□ -0.4
PHRF1-202ENST00000413872 RAI1Q7Z5J4 1906 aaPredicted RBP12.53□□□□□ -0.4
PHRF1-202ENST00000413872 C6orf99Q4VX62 202 aa12.53□□□□□ -0.4
PHRF1-202ENST00000413872 COX8CQ7Z4L0 72 aa12.53□□□□□ -0.4
PHRF1-202ENST00000413872 PRM2P04554 102 aa12.53□□□□□ -0.4
PHRF1-202ENST00000413872 LRCOL1A6NCL2 159 aa12.52□□□□□ -0.41
PHRF1-202ENST00000413872 M0R2N4 97 aa12.52□□□□□ -0.41
PHRF1-202ENST00000413872 PTH2Q96A98 100 aa12.52□□□□□ -0.41
PHRF1-202ENST00000413872 TLN2Q9Y4G6 2542 aa12.52□□□□□ -0.41
PHRF1-202ENST00000413872 EDN2P20800 178 aa12.52□□□□□ -0.41
PHRF1-202ENST00000413872 MAPKAPK5-AS1Q8N8E1 139 aa12.52□□□□□ -0.41
PHRF1-202ENST00000413872 B5MCH6 92 aa12.51□□□□□ -0.41
PHRF1-202ENST00000413872 FAM236AA0A1B0GUQ0 79 aa12.51□□□□□ -0.41
PHRF1-202ENST00000413872 FAM236BA0A1B0GV22 79 aa12.51□□□□□ -0.41
PHRF1-202ENST00000413872 C1orf158Q8N1D5 194 aa12.51□□□□□ -0.41
PHRF1-202ENST00000413872 ADAMTS20P59510 1910 aa12.5□□□□□ -0.41
PHRF1-202ENST00000413872 Q8N2B8 174 aa12.48□□□□□ -0.41
PHRF1-202ENST00000413872 A0A096LNI7 61 aa12.47□□□□□ -0.41
PHRF1-202ENST00000413872 ATP5EP2Q5VTU8 51 aa12.47□□□□□ -0.41
PHRF1-202ENST00000413872 UPK3BQ9BT76 320 aa12.47□□□□□ -0.41
PHRF1-202ENST00000413872 IGIPA6NJ69 53 aa12.47□□□□□ -0.41
PHRF1-202ENST00000413872 TRIAP1O43715 76 aa12.46□□□□□ -0.41
PHRF1-202ENST00000413872 SS18L2Q9UHA2 77 aa12.46□□□□□ -0.41
PHRF1-202ENST00000413872 BEAN1Q3B7T3 259 aa12.46□□□□□ -0.41
PHRF1-202ENST00000413872 SPTBN4Q9H254 2564 aa12.46□□□□□ -0.42
PHRF1-202ENST00000413872 EGFEM1PQ0D2K5 195 aa12.45□□□□□ -0.42
PHRF1-202ENST00000413872 WFDC9Q8NEX5 89 aa12.45□□□□□ -0.42
PHRF1-202ENST00000413872 LRRK2Q5S007 2527 aa12.45□□□□□ -0.42
PHRF1-202ENST00000413872 RETNQ9HD89 108 aa12.45□□□□□ -0.42
PHRF1-202ENST00000413872 USP9YO00507 2555 aaPredicted RBP12.45□□□□□ -0.42
PHRF1-202ENST00000413872 IGKV2-28A0A075B6P5 120 aa12.45□□□□□ -0.42
PHRF1-202ENST00000413872 IGKV2D-28P01615 120 aa12.45□□□□□ -0.42
PHRF1-202ENST00000413872 FHL2Q14192 279 aa12.45□□□□□ -0.42
PHRF1-202ENST00000413872 LINC00526Q96FQ7 95 aa12.45□□□□□ -0.42
PHRF1-202ENST00000413872 A8MZ25 164 aa12.44□□□□□ -0.42
PHRF1-202ENST00000413872 CSDC2Q9Y534 153 aaKnown RBP12.44□□□□□ -0.42
PHRF1-202ENST00000413872 CYSRT1A8MQ03 144 aa12.44□□□□□ -0.42
PHRF1-202ENST00000413872 EXPH5Q8NEV8 1989 aa12.44□□□□□ -0.42
PHRF1-202ENST00000413872 CENPFP49454 3210 aa12.44□□□□□ -0.42
PHRF1-202ENST00000413872 NHLRC4P0CG21 123 aaPredicted RBP12.43□□□□□ -0.42
PHRF1-202ENST00000413872 LINC00242Q5T6M2 205 aa12.43□□□□□ -0.42
PHRF1-202ENST00000413872 FN1P02751 2386 aaKnown RBP12.43□□□□□ -0.42
PHRF1-202ENST00000413872 GAS8-AS1O95177 125 aa12.43□□□□□ -0.42
PHRF1-202ENST00000413872 Q6ZTC4 211 aa12.43□□□□□ -0.42
PHRF1-202ENST00000413872 F8WDY8 70 aa12.42□□□□□ -0.42
PHRF1-202ENST00000413872 SLPIP03973 132 aa12.41□□□□□ -0.42
PHRF1-202ENST00000413872 G3V4G9 280 aa12.41□□□□□ -0.42
PHRF1-202ENST00000413872 ZNF462Q96JM2 2506 aa12.4□□□□□ -0.42
PHRF1-202ENST00000413872 Q6ZQY7 126 aa12.4□□□□□ -0.42
PHRF1-202ENST00000413872 ZNF73O43830 326 aaPredicted RBP12.4□□□□□ -0.42
PHRF1-202ENST00000413872 CCKP06307 115 aa12.4□□□□□ -0.42
PHRF1-202ENST00000413872 IGKV4-1P06312 121 aa12.39□□□□□ -0.43
PHRF1-202ENST00000413872 SETD2Q9BYW2 2564 aaPredicted RBP12.39□□□□□ -0.43
PHRF1-202ENST00000413872 COL4A2P08572 1712 aa12.39□□□□□ -0.43
PHRF1-202ENST00000413872 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.38□□□□□ -0.43
PHRF1-202ENST00000413872 EML5Q05BV3 1969 aa12.38□□□□□ -0.43
PHRF1-202ENST00000413872 TEX49A0A1B0GTD5 131 aa12.37□□□□□ -0.43
PHRF1-202ENST00000413872 PLAC8L1A1L4L8 177 aa12.37□□□□□ -0.43
PHRF1-202ENST00000413872 A0A1B0GUV1 79 aa12.37□□□□□ -0.43
PHRF1-202ENST00000413872 SMIM1B2RUZ4 78 aa12.36□□□□□ -0.43
PHRF1-202ENST00000413872 SMIM11BQ8TCY0 68 aa12.36□□□□□ -0.43
PHRF1-202ENST00000413872 LST1O00453 97 aa12.35□□□□□ -0.43
PHRF1-202ENST00000413872 POM121L12Q8N7R1 296 aa12.35□□□□□ -0.43
PHRF1-202ENST00000413872 UNQ6190/PRO20217Q6UXQ8 127 aa12.35□□□□□ -0.43
PHRF1-202ENST00000413872 RPL28P46779 137 aaKnown RBP12.34□□□□□ -0.43
PHRF1-202ENST00000413872 C2orf91Q6ZV80 131 aa12.34□□□□□ -0.43
PHRF1-202ENST00000413872 PPDPFQ9H3Y8 114 aa12.33□□□□□ -0.44
PHRF1-202ENST00000413872 RPL37AP8A6NKH3 93 aa12.33□□□□□ -0.44
PHRF1-202ENST00000413872 IGLV4-60A0A075B6I1 120 aa12.33□□□□□ -0.44
PHRF1-202ENST00000413872 AMELXQ99217 191 aa12.33□□□□□ -0.44
PHRF1-202ENST00000413872 M0QXV9 152 aa12.32□□□□□ -0.44
PHRF1-202ENST00000413872 SEC61GP60059 68 aa12.32□□□□□ -0.44
PHRF1-202ENST00000413872 LINC01561Q8N1V8 128 aa12.32□□□□□ -0.44
PHRF1-202ENST00000413872 FASNP49327 2511 aaKnown RBP12.32□□□□□ -0.44
PHRF1-202ENST00000413872 USP17L23D6RBM5 183 aa12.31□□□□□ -0.44
PHRF1-202ENST00000413872 C2orf48Q96LS8 159 aa12.31□□□□□ -0.44
PHRF1-202ENST00000413872 LYPD5Q6UWN5 251 aa12.3□□□□□ -0.44
PHRF1-202ENST00000413872 LINC00694P0DN24 101 aa12.3□□□□□ -0.44
PHRF1-202ENST00000413872 C5orf47Q569G3 176 aa12.3□□□□□ -0.44
PHRF1-202ENST00000413872 IGLV5-52A0A0A0MRZ9 124 aa12.29□□□□□ -0.44
PHRF1-202ENST00000413872 CASC2Q6XLA1 102 aa12.29□□□□□ -0.44
PHRF1-202ENST00000413872 FHL3Q13643 280 aa12.29□□□□□ -0.44
PHRF1-202ENST00000413872 URB1-AS1Q96HZ7 61 aa12.28□□□□□ -0.44
PHRF1-202ENST00000413872 C1orf134Q5TEV5 83 aa12.28□□□□□ -0.44
PHRF1-202ENST00000413872 C6orf223Q8N319 242 aa12.27□□□□□ -0.44
PHRF1-202ENST00000413872 SDIM1Q6ZPB5 146 aa12.27□□□□□ -0.45
PHRF1-202ENST00000413872 C3orf84H3BNL1 204 aa12.26□□□□□ -0.45
PHRF1-202ENST00000413872 ENHOQ6UWT2 76 aa12.26□□□□□ -0.45
PHRF1-202ENST00000413872 NDUFC2-KCTD14E9PQ53 114 aa12.26□□□□□ -0.45
PHRF1-202ENST00000413872 SCXQ7RTU7 201 aa12.25□□□□□ -0.45
PHRF1-202ENST00000413872 NDUFV3P56181 108 aaKnown RBP12.25□□□□□ -0.45
PHRF1-202ENST00000413872 REG3GQ6UW15 175 aa12.24□□□□□ -0.45
PHRF1-202ENST00000413872 SPINK6Q6UWN8 80 aa12.24□□□□□ -0.45
PHRF1-202ENST00000413872 LINC00310P59036 64 aa12.24□□□□□ -0.45
PHRF1-202ENST00000413872 COX6A2Q02221 97 aa12.24□□□□□ -0.45
PHRF1-202ENST00000413872 MT-ATP8P03928 68 aa12.24□□□□□ -0.45
PHRF1-202ENST00000413872 C10orf25Q5T742 122 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms