RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 FSHBP01225 129 aa5.84□□□□□ -1.47
SYNE1-210ENST00000409694 NANOS2P60321 138 aaKnown RBP5.84□□□□□ -1.47
SYNE1-210ENST00000409694 CIRBP-AS1Q8TBR5 109 aa5.84□□□□□ -1.47
SYNE1-210ENST00000409694 FBXL19-AS1Q494R0 122 aa5.83□□□□□ -1.48
SYNE1-210ENST00000409694 KPRPQ5T749 579 aaPredicted RBP5.83□□□□□ -1.48
SYNE1-210ENST00000409694 RPL37AP8A6NKH3 93 aa5.83□□□□□ -1.48
SYNE1-210ENST00000409694 SPRNQ5BIV9 151 aa5.83□□□□□ -1.48
SYNE1-210ENST00000409694 PSPHP1O15172 72 aa5.83□□□□□ -1.48
SYNE1-210ENST00000409694 TRBV10-3A0A0K0K1G6 114 aa5.83□□□□□ -1.48
SYNE1-210ENST00000409694 TSHBP01222 138 aa5.83□□□□□ -1.48
SYNE1-210ENST00000409694 GRNP28799 593 aaKnown RBP5.83□□□□□ -1.48
SYNE1-210ENST00000409694 CHCHD7Q9BUK0 85 aa5.83□□□□□ -1.48
SYNE1-210ENST00000409694 ZNF702PQ9H963 129 aa5.83□□□□□ -1.48
SYNE1-210ENST00000409694 MYO18BQ8IUG5 2567 aa5.83□□□□□ -1.48
SYNE1-210ENST00000409694 HCG22E2RYF7 251 aa5.83□□□□□ -1.48
SYNE1-210ENST00000409694 HIVEP2P31629 2446 aa5.83□□□□□ -1.48
SYNE1-210ENST00000409694 COL4A6Q14031 1691 aa5.82□□□□□ -1.48
SYNE1-210ENST00000409694 ZNF80P51504 273 aaPredicted RBP5.82□□□□□ -1.48
SYNE1-210ENST00000409694 PIEZO1Q92508 2521 aa5.82□□□□□ -1.48
SYNE1-210ENST00000409694 LINC01547P58512 204 aaPredicted RBP5.82□□□□□ -1.48
SYNE1-210ENST00000409694 TP53AIP1Q9HCN2 124 aa5.82□□□□□ -1.48
SYNE1-210ENST00000409694 RBX1P62877 108 aa5.82□□□□□ -1.48
SYNE1-210ENST00000409694 A8MZ25 164 aa5.82□□□□□ -1.48
SYNE1-210ENST00000409694 LINC00959A0A1B0GUT2 108 aa5.82□□□□□ -1.48
SYNE1-210ENST00000409694 ADORA2A-AS1P86434 159 aa5.82□□□□□ -1.48
SYNE1-210ENST00000409694 PRO0628Q9UI54 55 aa5.82□□□□□ -1.48
SYNE1-210ENST00000409694 FAM208BQ5VWN6 2430 aa5.82□□□□□ -1.48
SYNE1-210ENST00000409694 CRYGAP11844 174 aa5.81□□□□□ -1.48
SYNE1-210ENST00000409694 EGFEM1PQ0D2K5 195 aa5.81□□□□□ -1.48
SYNE1-210ENST00000409694 LTBP2Q14767 1821 aa5.81□□□□□ -1.48
SYNE1-210ENST00000409694 TMEM254Q8TBM7 123 aa5.81□□□□□ -1.48
SYNE1-210ENST00000409694 TECTAO75443 2155 aa5.81□□□□□ -1.48
SYNE1-210ENST00000409694 MUC6Q6W4X9 2439 aa5.81□□□□□ -1.48
SYNE1-210ENST00000409694 PRORYQ9H606 182 aa5.81□□□□□ -1.48
SYNE1-210ENST00000409694 SOSTDC1Q6X4U4 206 aa5.81□□□□□ -1.48
SYNE1-210ENST00000409694 C7orf65Q6ZTY9 151 aa5.81□□□□□ -1.48
SYNE1-210ENST00000409694 A0A1B0GU69 56 aa5.8□□□□□ -1.48
SYNE1-210ENST00000409694 XGP55808 180 aa5.8□□□□□ -1.48
SYNE1-210ENST00000409694 IGLV2-8P01709 118 aa5.8□□□□□ -1.48
SYNE1-210ENST00000409694 MAPKAPK5-AS1Q8N8E1 139 aa5.8□□□□□ -1.48
SYNE1-210ENST00000409694 C11orf1Q9H5F2 150 aa5.8□□□□□ -1.48
SYNE1-210ENST00000409694 E7EUB6 86 aa5.8□□□□□ -1.48
SYNE1-210ENST00000409694 ACYP2P14621 99 aa5.79□□□□□ -1.48
SYNE1-210ENST00000409694 GDF5OSQ5U4N7 250 aa5.79□□□□□ -1.48
SYNE1-210ENST00000409694 COL4A4P53420 1690 aaPredicted RBP5.79□□□□□ -1.48
SYNE1-210ENST00000409694 OTOGLQ3ZCN5 2332 aa5.79□□□□□ -1.48
SYNE1-210ENST00000409694 IGLV5-52A0A0A0MRZ9 124 aa5.79□□□□□ -1.48
SYNE1-210ENST00000409694 Q9BRP9 147 aa5.79□□□□□ -1.48
SYNE1-210ENST00000409694 DEFB1P60022 68 aa5.79□□□□□ -1.48
SYNE1-210ENST00000409694 C2orf91Q6ZV80 131 aa5.79□□□□□ -1.48
SYNE1-210ENST00000409694 C8orf87E5RJ46 101 aa5.79□□□□□ -1.48
SYNE1-210ENST00000409694 Q8N3U1 123 aa5.79□□□□□ -1.48
SYNE1-210ENST00000409694 BBC3Q96PG8 261 aaPredicted RBP5.79□□□□□ -1.48
SYNE1-210ENST00000409694 PLA2G2AP14555 144 aa5.78□□□□□ -1.48
SYNE1-210ENST00000409694 CLUHP3Q96NS8 147 aa5.78□□□□□ -1.48
SYNE1-210ENST00000409694 PTPRQQ9UMZ3 2332 aa5.78□□□□□ -1.48
SYNE1-210ENST00000409694 BEAN1Q3B7T3 259 aa5.78□□□□□ -1.48
SYNE1-210ENST00000409694 TTC28Q96AY4 2481 aa5.78□□□□□ -1.48
SYNE1-210ENST00000409694 LY6G6CO95867 125 aa5.78□□□□□ -1.48
SYNE1-210ENST00000409694 MBD6Q96DN6 1003 aa5.78□□□□□ -1.48
SYNE1-210ENST00000409694 SPINK1P00995 79 aa5.77□□□□□ -1.49
SYNE1-210ENST00000409694 PLA2G2EQ9NZK7 142 aa5.77□□□□□ -1.49
SYNE1-210ENST00000409694 CYSRT1A8MQ03 144 aa5.77□□□□□ -1.49
SYNE1-210ENST00000409694 A0A1B0GW54 56 aa5.77□□□□□ -1.49
SYNE1-210ENST00000409694 KLLNB2CW77 178 aa5.77□□□□□ -1.49
SYNE1-210ENST00000409694 CACNA1AO00555 2505 aa5.77□□□□□ -1.49
SYNE1-210ENST00000409694 PSMG3-AS1Q96PY0 264 aa5.76□□□□□ -1.49
SYNE1-210ENST00000409694 LINC00575Q6W349 94 aa5.76□□□□□ -1.49
SYNE1-210ENST00000409694 CNFNQ9BYD5 112 aa5.76□□□□□ -1.49
SYNE1-210ENST00000409694 LINC01561Q8N1V8 128 aa5.76□□□□□ -1.49
SYNE1-210ENST00000409694 CDC42SE2Q9NRR3 84 aa5.76□□□□□ -1.49
SYNE1-210ENST00000409694 SPINT4Q6UDR6 99 aa5.76□□□□□ -1.49
SYNE1-210ENST00000409694 Q6ZTC4 211 aa5.76□□□□□ -1.49
SYNE1-210ENST00000409694 LINC00337Q8N6G1 96 aa5.76□□□□□ -1.49
SYNE1-210ENST00000409694 PLA2G1BP04054 148 aaKnown RBP5.75□□□□□ -1.49
SYNE1-210ENST00000409694 POM121L12Q8N7R1 296 aa5.75□□□□□ -1.49
SYNE1-210ENST00000409694 PRLHP81277 87 aa5.75□□□□□ -1.49
SYNE1-210ENST00000409694 PCOTHQ58A44 107 aa5.75□□□□□ -1.49
SYNE1-210ENST00000409694 C1orf64Q8NEQ6 169 aa5.75□□□□□ -1.49
SYNE1-210ENST00000409694 Q8N6K4 173 aa5.75□□□□□ -1.49
SYNE1-210ENST00000409694 IGLV2-18A0A075B6J9 118 aa5.75□□□□□ -1.49
SYNE1-210ENST00000409694 H3BPC8 53 aa5.75□□□□□ -1.49
SYNE1-210ENST00000409694 FRMD6-AS1P0C7T7 363 aa5.74□□□□□ -1.49
SYNE1-210ENST00000409694 NRGNQ92686 78 aa5.74□□□□□ -1.49
SYNE1-210ENST00000409694 SONP18583 2426 aaKnown RBP5.74□□□□□ -1.49
SYNE1-210ENST00000409694 C2orf48Q96LS8 159 aa5.74□□□□□ -1.49
SYNE1-210ENST00000409694 SBSPONQ8IVN8 264 aa5.74□□□□□ -1.49
SYNE1-210ENST00000409694 ANKHD1Q8IWZ3 2542 aaKnown RBP5.74□□□□□ -1.49
SYNE1-210ENST00000409694 M0R2N4 97 aa5.74□□□□□ -1.49
SYNE1-210ENST00000409694 RNASE3P12724 160 aaKnown RBP5.74□□□□□ -1.49
SYNE1-210ENST00000409694 Q8N2B8 174 aa5.74□□□□□ -1.49
SYNE1-210ENST00000409694 CUL9Q8IWT3 2517 aa5.73□□□□□ -1.49
SYNE1-210ENST00000409694 IGLV2-11P01706 119 aa5.73□□□□□ -1.49
SYNE1-210ENST00000409694 NAV3Q8IVL0 2385 aa5.73□□□□□ -1.49
SYNE1-210ENST00000409694 BDP1A6H8Y1 2624 aa5.73□□□□□ -1.49
SYNE1-210ENST00000409694 A0A087WYN8 130 aa5.73□□□□□ -1.49
SYNE1-210ENST00000409694 MSMPQ1L6U9 139 aa5.73□□□□□ -1.49
SYNE1-210ENST00000409694 BCE1O60756 84 aa5.73□□□□□ -1.49
SYNE1-210ENST00000409694 POLR2KP53803 58 aaKnown RBP5.73□□□□□ -1.49
SYNE1-210ENST00000409694 C6orf48Q9UBA6 75 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms