RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 TMEM238C9JI98 176 aa13.13□□□□□ -0.31
USP39-202ENST00000409025 RBX1P62877 108 aa13.13□□□□□ -0.31
USP39-202ENST00000409025 SMIM1B2RUZ4 78 aa13.13□□□□□ -0.31
USP39-202ENST00000409025 IGHV3-30P01768 117 aa13.13□□□□□ -0.31
USP39-202ENST00000409025 IGHV3-30-5P0DP03 117 aa13.13□□□□□ -0.31
USP39-202ENST00000409025 H3BUT2 72 aa13.12□□□□□ -0.31
USP39-202ENST00000409025 A0A1B0GWB2 263 aa13.11□□□□□ -0.31
USP39-202ENST00000409025 UBE2V1Q13404 147 aa13.11□□□□□ -0.31
USP39-202ENST00000409025 NDUFA1O15239 70 aa13.1□□□□□ -0.31
USP39-202ENST00000409025 NAA38Q9BRA0 125 aaKnown RBP13.09□□□□□ -0.31
USP39-202ENST00000409025 COL6A5A8TX70 2615 aa13.09□□□□□ -0.31
USP39-202ENST00000409025 LINC00959A0A1B0GUT2 108 aa13.09□□□□□ -0.31
USP39-202ENST00000409025 A0A0J9YWU9 116 aa13.08□□□□□ -0.32
USP39-202ENST00000409025 LELP1Q5T871 98 aa13.08□□□□□ -0.32
USP39-202ENST00000409025 PRB2P02812 416 aaPredicted RBP13.07□□□□□ -0.32
USP39-202ENST00000409025 SS18Q15532 418 aa13.07□□□□□ -0.32
USP39-202ENST00000409025 H3BNG1 76 aa13.07□□□□□ -0.32
USP39-202ENST00000409025 Q6ZTC4 211 aa13.07□□□□□ -0.32
USP39-202ENST00000409025 LITAFQ99732 161 aa13.07□□□□□ -0.32
USP39-202ENST00000409025 DNAH3Q8TD57 4116 aa13.06□□□□□ -0.32
USP39-202ENST00000409025 PKD1L1Q8TDX9 2849 aa13.06□□□□□ -0.32
USP39-202ENST00000409025 IGHV3OR16-9A0A0B4J2B5 98 aa13.06□□□□□ -0.32
USP39-202ENST00000409025 A0A1W2PPM0 123 aa13.06□□□□□ -0.32
USP39-202ENST00000409025 Q9H8V8 135 aa13.06□□□□□ -0.32
USP39-202ENST00000409025 CCL25O15444 150 aa13.05□□□□□ -0.32
USP39-202ENST00000409025 TIMM17BO60830 172 aa13.05□□□□□ -0.32
USP39-202ENST00000409025 SPATA25Q9BR10 227 aa13.05□□□□□ -0.32
USP39-202ENST00000409025 IGLL5B9A064 214 aa13.05□□□□□ -0.32
USP39-202ENST00000409025 K7EIL1 84 aa13.05□□□□□ -0.32
USP39-202ENST00000409025 RPL24P83731 157 aaKnown RBP13.05□□□□□ -0.32
USP39-202ENST00000409025 MUSTN1Q8IVN3 82 aa13.05□□□□□ -0.32
USP39-202ENST00000409025 SPANXDQ9BXN6 97 aa13.05□□□□□ -0.32
USP39-202ENST00000409025 SPANXCQ9NY87 97 aa13.05□□□□□ -0.32
USP39-202ENST00000409025 DEFB121Q5J5C9 76 aa13.04□□□□□ -0.32
USP39-202ENST00000409025 C11orf45Q8TAV5 145 aa13.04□□□□□ -0.32
USP39-202ENST00000409025 A0A087WZ39 114 aa13.03□□□□□ -0.32
USP39-202ENST00000409025 APOMO95445 188 aa13.03□□□□□ -0.32
USP39-202ENST00000409025 FABP2P12104 132 aa13.03□□□□□ -0.32
USP39-202ENST00000409025 CIRBPQ14011 172 aaKnown RBP13.03□□□□□ -0.32
USP39-202ENST00000409025 KPRPQ5T749 579 aaPredicted RBP13.03□□□□□ -0.32
USP39-202ENST00000409025 MDFIQ99750 246 aa13.03□□□□□ -0.32
USP39-202ENST00000409025 GAGE10A6NGK3 116 aa13.03□□□□□ -0.32
USP39-202ENST00000409025 ANGP03950 147 aaKnown RBP13.03□□□□□ -0.32
USP39-202ENST00000409025 ADAMTSL4-AS1Q5T5F5 129 aa13.03□□□□□ -0.32
USP39-202ENST00000409025 CLPSL2Q6UWE3 100 aa13.03□□□□□ -0.32
USP39-202ENST00000409025 LYPD5Q6UWN5 251 aa13.03□□□□□ -0.32
USP39-202ENST00000409025 GTF2H5Q6ZYL4 71 aa13.03□□□□□ -0.32
USP39-202ENST00000409025 LINC00269Q8N2A0 174 aa13.03□□□□□ -0.32
USP39-202ENST00000409025 PRSS2P07478 247 aa13.02□□□□□ -0.32
USP39-202ENST00000409025 NANOS2P60321 138 aaKnown RBP13.02□□□□□ -0.32
USP39-202ENST00000409025 MIAQ16674 131 aa13.02□□□□□ -0.32
USP39-202ENST00000409025 COX7B2Q8TF08 81 aa13.02□□□□□ -0.32
USP39-202ENST00000409025 A4D1N5 150 aa13.01□□□□□ -0.33
USP39-202ENST00000409025 XCL1P47992 114 aa13.01□□□□□ -0.33
USP39-202ENST00000409025 HERV-K104P63124 156 aa13.01□□□□□ -0.33
USP39-202ENST00000409025 C5orf38Q86SI9 138 aa13.01□□□□□ -0.33
USP39-202ENST00000409025 ZNF625Q96I27 306 aaPredicted RBP13.01□□□□□ -0.33
USP39-202ENST00000409025 CFC1BP0CG36 223 aa13.01□□□□□ -0.33
USP39-202ENST00000409025 CFC1P0CG37 223 aa13.01□□□□□ -0.33
USP39-202ENST00000409025 TM2D3Q9BRN9 247 aa13.01□□□□□ -0.33
USP39-202ENST00000409025 K7EP34 96 aa13□□□□□ -0.33
USP39-202ENST00000409025 REG3AQ06141 175 aa13□□□□□ -0.33
USP39-202ENST00000409025 Q8N3U1 123 aa13□□□□□ -0.33
USP39-202ENST00000409025 PGPEP1Q9NXJ5 209 aa13□□□□□ -0.33
USP39-202ENST00000409025 TOMM7Q9P0U1 55 aa13□□□□□ -0.33
USP39-202ENST00000409025 SPCS1Q9Y6A9 102 aa13□□□□□ -0.33
USP39-202ENST00000409025 DEFB131BA0A096LNP1 70 aa12.99□□□□□ -0.33
USP39-202ENST00000409025 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.99□□□□□ -0.33
USP39-202ENST00000409025 MRAPQ8TCY5 172 aa12.99□□□□□ -0.33
USP39-202ENST00000409025 IFITM1P13164 125 aa12.98□□□□□ -0.33
USP39-202ENST00000409025 ANK2Q01484 3957 aa12.98□□□□□ -0.33
USP39-202ENST00000409025 MEIG1Q5JSS6 88 aa12.98□□□□□ -0.33
USP39-202ENST00000409025 LINC01561Q8N1V8 128 aa12.97□□□□□ -0.33
USP39-202ENST00000409025 PRO1854Q9UHT4 67 aa12.97□□□□□ -0.33
USP39-202ENST00000409025 A0A0B4J2C4 111 aa12.96□□□□□ -0.33
USP39-202ENST00000409025 CD164L2Q6UWJ8 174 aa12.96□□□□□ -0.33
USP39-202ENST00000409025 CHCHD10Q8WYQ3 142 aaPredicted RBP12.96□□□□□ -0.34
USP39-202ENST00000409025 TSPAN13O95857 204 aa12.95□□□□□ -0.34
USP39-202ENST00000409025 NPC2P61916 151 aa12.95□□□□□ -0.34
USP39-202ENST00000409025 DAND5Q8N907 189 aa12.95□□□□□ -0.34
USP39-202ENST00000409025 COPS9Q8WXC6 57 aa12.94□□□□□ -0.34
USP39-202ENST00000409025 IGLV10-54A0A075B6I4 117 aa12.93□□□□□ -0.34
USP39-202ENST00000409025 A0A0U1RRA0 63 aa12.93□□□□□ -0.34
USP39-202ENST00000409025 SFTA2Q6UW10 78 aa12.93□□□□□ -0.34
USP39-202ENST00000409025 KLK12Q9UKR0 248 aa12.93□□□□□ -0.34
USP39-202ENST00000409025 COX7A2LO14548 114 aa12.92□□□□□ -0.34
USP39-202ENST00000409025 EIF4EBP3O60516 100 aaPredicted RBP12.92□□□□□ -0.34
USP39-202ENST00000409025 C6orf226Q5I0X4 101 aa12.92□□□□□ -0.34
USP39-202ENST00000409025 LINC00308Q8TCZ7 52 aa12.92□□□□□ -0.34
USP39-202ENST00000409025 PRR34Q9NV39 138 aa12.92□□□□□ -0.34
USP39-202ENST00000409025 TRAV10A0A0B4J240 114 aa12.91□□□□□ -0.34
USP39-202ENST00000409025 IGHV3-33P01772 117 aa12.91□□□□□ -0.34
USP39-202ENST00000409025 NOTCH1P46531 2555 aa12.91□□□□□ -0.34
USP39-202ENST00000409025 ESRGQ1W209 222 aa12.9□□□□□ -0.34
USP39-202ENST00000409025 Q8IZM0 81 aa12.9□□□□□ -0.34
USP39-202ENST00000409025 MALP21145 153 aa12.9□□□□□ -0.35
USP39-202ENST00000409025 WFDC10BQ8IUB3 73 aa12.9□□□□□ -0.35
USP39-202ENST00000409025 ERG28Q9UKR5 140 aa12.9□□□□□ -0.35
USP39-202ENST00000409025 LOC107984156A0A0G2JMH3 177 aa12.88□□□□□ -0.35
USP39-202ENST00000409025 FOXI1Q12951 378 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms