RNA–Protein interactions for RNA: ENST00000406659.3

DNMT3A-206, Transcript of DNA methyltransferase 3 alpha, humanhuman

TSL 1 (best) BASIC

Gene DNMT3A, Length 1,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT3A-206ENST00000406659 IGKV3OR2-268A0A0C4DH90 116 aa17.17■□□□□ 0.34
DNMT3A-206ENST00000406659 SMIM1B2RUZ4 78 aa17.17■□□□□ 0.34
DNMT3A-206ENST00000406659 TMEM262E9PQX1 116 aa17.17■□□□□ 0.34
DNMT3A-206ENST00000406659 APOMO95445 188 aa17.17■□□□□ 0.34
DNMT3A-206ENST00000406659 NDUFA1O15239 70 aa17.16■□□□□ 0.34
DNMT3A-206ENST00000406659 HTN3P15516 51 aa17.16■□□□□ 0.34
DNMT3A-206ENST00000406659 TRAV26-1A0A087WT03 109 aa17.15■□□□□ 0.34
DNMT3A-206ENST00000406659 TEX48A0A1B0GUV7 120 aa17.15■□□□□ 0.34
DNMT3A-206ENST00000406659 RPL24P83731 157 aaKnown RBP17.15■□□□□ 0.34
DNMT3A-206ENST00000406659 MUSTN1Q8IVN3 82 aa17.15■□□□□ 0.34
DNMT3A-206ENST00000406659 LITAFQ99732 161 aa17.15■□□□□ 0.34
DNMT3A-206ENST00000406659 PGPEP1Q9NXJ5 209 aa17.14■□□□□ 0.33
DNMT3A-206ENST00000406659 A0A1B0GUV1 79 aa17.12■□□□□ 0.33
DNMT3A-206ENST00000406659 CFC1BP0CG36 223 aa17.12■□□□□ 0.33
DNMT3A-206ENST00000406659 CFC1P0CG37 223 aa17.12■□□□□ 0.33
DNMT3A-206ENST00000406659 STAB1Q9NY15 2570 aa17.12■□□□□ 0.33
DNMT3A-206ENST00000406659 A4D1N5 150 aa17.12■□□□□ 0.33
DNMT3A-206ENST00000406659 RBX1P62877 108 aa17.12■□□□□ 0.33
DNMT3A-206ENST00000406659 SPANXDQ9BXN6 97 aa17.12■□□□□ 0.33
DNMT3A-206ENST00000406659 RETNQ9HD89 108 aa17.12■□□□□ 0.33
DNMT3A-206ENST00000406659 SPANXCQ9NY87 97 aa17.12■□□□□ 0.33
DNMT3A-206ENST00000406659 TIMM17BO60830 172 aa17.11■□□□□ 0.33
DNMT3A-206ENST00000406659 PRSS2P07478 247 aa17.11■□□□□ 0.33
DNMT3A-206ENST00000406659 Q9H8V8 135 aa17.11■□□□□ 0.33
DNMT3A-206ENST00000406659 MRPL23Q16540 153 aaKnown RBP17.1■□□□□ 0.33
DNMT3A-206ENST00000406659 ADAMTSL4-AS1Q5T5F5 129 aa17.1■□□□□ 0.33
DNMT3A-206ENST00000406659 G3V4G9 280 aa17.1■□□□□ 0.33
DNMT3A-206ENST00000406659 MIAQ16674 131 aa17.09■□□□□ 0.33
DNMT3A-206ENST00000406659 LINC00959A0A1B0GUT2 108 aa17.08■□□□□ 0.33
DNMT3A-206ENST00000406659 CIRBPQ14011 172 aaKnown RBP17.08■□□□□ 0.33
DNMT3A-206ENST00000406659 ICOSQ9Y6W8 199 aa17.08■□□□□ 0.33
DNMT3A-206ENST00000406659 TRAV16A0A0A6YYK6 109 aaPredicted RBP17.07■□□□□ 0.32
DNMT3A-206ENST00000406659 SH2D6Q7Z4S9 175 aa17.07■□□□□ 0.32
DNMT3A-206ENST00000406659 MAST4O15021 2626 aa17.07■□□□□ 0.32
DNMT3A-206ENST00000406659 TSPAN13O95857 204 aa17.07■□□□□ 0.32
DNMT3A-206ENST00000406659 PRO1854Q9UHT4 67 aa17.07■□□□□ 0.32
DNMT3A-206ENST00000406659 SS18Q15532 418 aa17.05■□□□□ 0.32
DNMT3A-206ENST00000406659 IGHV3OR16-9A0A0B4J2B5 98 aa17.05■□□□□ 0.32
DNMT3A-206ENST00000406659 ZNF625Q96I27 306 aaPredicted RBP17.04■□□□□ 0.32
DNMT3A-206ENST00000406659 CMYA5Q8N3K9 4069 aa17.04■□□□□ 0.32
DNMT3A-206ENST00000406659 A0A0B4J2C4 111 aa17.03■□□□□ 0.32
DNMT3A-206ENST00000406659 HERV-K104P63124 156 aa17.03■□□□□ 0.32
DNMT3A-206ENST00000406659 COX7B2Q8TF08 81 aa17.03■□□□□ 0.32
DNMT3A-206ENST00000406659 IFITM1P13164 125 aa17.02■□□□□ 0.32
DNMT3A-206ENST00000406659 A0A087WZ39 114 aa17.02■□□□□ 0.31
DNMT3A-206ENST00000406659 NPC2P61916 151 aa17.02■□□□□ 0.31
DNMT3A-206ENST00000406659 C5orf38Q86SI9 138 aa17.01■□□□□ 0.31
DNMT3A-206ENST00000406659 LOC107984156A0A0G2JMH3 177 aa17■□□□□ 0.31
DNMT3A-206ENST00000406659 CLPSL2Q6UWE3 100 aa17■□□□□ 0.31
DNMT3A-206ENST00000406659 ARL17AQ8IVW1 177 aa17■□□□□ 0.31
DNMT3A-206ENST00000406659 C11orf68Q9H3H3 251 aaKnown RBP17■□□□□ 0.31
DNMT3A-206ENST00000406659 TOMM7Q9P0U1 55 aa17■□□□□ 0.31
DNMT3A-206ENST00000406659 EIF4EBP3O60516 100 aaPredicted RBP17■□□□□ 0.31
DNMT3A-206ENST00000406659 MEIG1Q5JSS6 88 aa17■□□□□ 0.31
DNMT3A-206ENST00000406659 LELP1Q5T871 98 aa17■□□□□ 0.31
DNMT3A-206ENST00000406659 DAND5Q8N907 189 aa17■□□□□ 0.31
DNMT3A-206ENST00000406659 PKD1L1Q8TDX9 2849 aa16.99■□□□□ 0.31
DNMT3A-206ENST00000406659 XCL1P47992 114 aa16.99■□□□□ 0.31
DNMT3A-206ENST00000406659 LYRM7Q5U5X0 104 aa16.98■□□□□ 0.31
DNMT3A-206ENST00000406659 SFTA2Q6UW10 78 aa16.98■□□□□ 0.31
DNMT3A-206ENST00000406659 LINC00269Q8N2A0 174 aa16.98■□□□□ 0.31
DNMT3A-206ENST00000406659 ERG28Q9UKR5 140 aa16.98■□□□□ 0.31
DNMT3A-206ENST00000406659 IGHV3-33P01772 117 aa16.97■□□□□ 0.31
DNMT3A-206ENST00000406659 ANGP03950 147 aaKnown RBP16.97■□□□□ 0.31
DNMT3A-206ENST00000406659 A0A0U1RRA0 63 aa16.97■□□□□ 0.31
DNMT3A-206ENST00000406659 COPS9Q8WXC6 57 aa16.95■□□□□ 0.3
DNMT3A-206ENST00000406659 H3BMG7 143 aa16.94■□□□□ 0.3
DNMT3A-206ENST00000406659 H7C2G1 150 aa16.94■□□□□ 0.3
DNMT3A-206ENST00000406659 Q8N3U1 123 aa16.94■□□□□ 0.3
DNMT3A-206ENST00000406659 LINC00308Q8TCZ7 52 aa16.94■□□□□ 0.3
DNMT3A-206ENST00000406659 H3BNG1 76 aa16.93■□□□□ 0.3
DNMT3A-206ENST00000406659 Q6ZTC4 211 aa16.93■□□□□ 0.3
DNMT3A-206ENST00000406659 COL6A5A8TX70 2615 aa16.93■□□□□ 0.3
DNMT3A-206ENST00000406659 A0A0J9YWU9 116 aa16.92■□□□□ 0.3
DNMT3A-206ENST00000406659 REG3AQ06141 175 aa16.92■□□□□ 0.3
DNMT3A-206ENST00000406659 SCGB1C2P0DMR2 95 aa16.92■□□□□ 0.3
DNMT3A-206ENST00000406659 PSMB2P49721 201 aa16.92■□□□□ 0.3
DNMT3A-206ENST00000406659 Q1RN00 199 aa16.92■□□□□ 0.3
DNMT3A-206ENST00000406659 LYPD5Q6UWN5 251 aa16.92■□□□□ 0.3
DNMT3A-206ENST00000406659 LINC01561Q8N1V8 128 aa16.91■□□□□ 0.3
DNMT3A-206ENST00000406659 KPRPQ5T749 579 aaPredicted RBP16.9■□□□□ 0.3
DNMT3A-206ENST00000406659 CD164L2Q6UWJ8 174 aa16.89■□□□□ 0.3
DNMT3A-206ENST00000406659 CHCHD10Q8WYQ3 142 aaPredicted RBP16.89■□□□□ 0.3
DNMT3A-206ENST00000406659 DNAH3Q8TD57 4116 aa16.89■□□□□ 0.29
DNMT3A-206ENST00000406659 F8W1H4 67 aa16.89■□□□□ 0.29
DNMT3A-206ENST00000406659 C6orf226Q5I0X4 101 aa16.89■□□□□ 0.29
DNMT3A-206ENST00000406659 PRB2P02812 416 aaPredicted RBP16.87■□□□□ 0.29
DNMT3A-206ENST00000406659 TRBV20-1A0A075B6N2 111 aa16.87■□□□□ 0.29
DNMT3A-206ENST00000406659 COX7A2LO14548 114 aa16.87■□□□□ 0.29
DNMT3A-206ENST00000406659 OCIAD2Q56VL3 154 aa16.87■□□□□ 0.29
DNMT3A-206ENST00000406659 C11orf45Q8TAV5 145 aa16.87■□□□□ 0.29
DNMT3A-206ENST00000406659 IGLV10-54A0A075B6I4 117 aa16.86■□□□□ 0.29
DNMT3A-206ENST00000406659 NANOS2P60321 138 aaKnown RBP16.86■□□□□ 0.29
DNMT3A-206ENST00000406659 SOSTDC1Q6X4U4 206 aa16.85■□□□□ 0.29
DNMT3A-206ENST00000406659 Q8IZM0 81 aa16.84■□□□□ 0.29
DNMT3A-206ENST00000406659 TCL1BO95988 128 aa16.84■□□□□ 0.29
DNMT3A-206ENST00000406659 LINC00158P58513 81 aa16.84■□□□□ 0.29
DNMT3A-206ENST00000406659 WFDC2Q14508 124 aa16.83■□□□□ 0.28
DNMT3A-206ENST00000406659 SPATA25Q9BR10 227 aa16.83■□□□□ 0.28
DNMT3A-206ENST00000406659 PPDPFQ9H3Y8 114 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms