RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 LINC00310P59036 64 aa13.25□□□□□ -0.29
COL18A1-204ENST00000400337 TIMM17BO60830 172 aa13.25□□□□□ -0.29
COL18A1-204ENST00000400337 CRIP2P52943 208 aaPredicted RBP13.25□□□□□ -0.29
COL18A1-204ENST00000400337 UBE2D3P61077 147 aa13.24□□□□□ -0.29
COL18A1-204ENST00000400337 UBE2D2P62837 147 aa13.24□□□□□ -0.29
COL18A1-204ENST00000400337 NDUFV3P56181 108 aaKnown RBP13.24□□□□□ -0.29
COL18A1-204ENST00000400337 SETD2Q9BYW2 2564 aaPredicted RBP13.23□□□□□ -0.29
COL18A1-204ENST00000400337 URB1-AS1Q96HZ7 61 aa13.22□□□□□ -0.29
COL18A1-204ENST00000400337 IGLV2-18A0A075B6J9 118 aa13.22□□□□□ -0.29
COL18A1-204ENST00000400337 IGKV2-28A0A075B6P5 120 aa13.22□□□□□ -0.29
COL18A1-204ENST00000400337 IGIPA6NJ69 53 aa13.22□□□□□ -0.29
COL18A1-204ENST00000400337 IGKV2D-28P01615 120 aa13.22□□□□□ -0.29
COL18A1-204ENST00000400337 IGHV4-30-4P0DP06 118 aa13.22□□□□□ -0.29
COL18A1-204ENST00000400337 CDC42SE2Q9NRR3 84 aa13.21□□□□□ -0.29
COL18A1-204ENST00000400337 NDUFA7O95182 113 aa13.21□□□□□ -0.29
COL18A1-204ENST00000400337 MRGPRG-AS1Q2M3A8 158 aa13.21□□□□□ -0.29
COL18A1-204ENST00000400337 SCXQ7RTU7 201 aa13.21□□□□□ -0.3
COL18A1-204ENST00000400337 USP9YO00507 2555 aaPredicted RBP13.21□□□□□ -0.3
COL18A1-204ENST00000400337 COL5A1P20908 1838 aaPredicted RBP13.2□□□□□ -0.3
COL18A1-204ENST00000400337 LRCOL1A6NCL2 159 aa13.2□□□□□ -0.3
COL18A1-204ENST00000400337 POM121L12Q8N7R1 296 aa13.19□□□□□ -0.3
COL18A1-204ENST00000400337 ENHOQ6UWT2 76 aa13.19□□□□□ -0.3
COL18A1-204ENST00000400337 NANOS2P60321 138 aaKnown RBP13.18□□□□□ -0.3
COL18A1-204ENST00000400337 C20orf197Q8N268 126 aa13.18□□□□□ -0.3
COL18A1-204ENST00000400337 CPAMD8Q8IZJ3 1885 aa13.18□□□□□ -0.3
COL18A1-204ENST00000400337 IGLV1-51P01701 117 aa13.17□□□□□ -0.3
COL18A1-204ENST00000400337 RAI1Q7Z5J4 1906 aaPredicted RBP13.17□□□□□ -0.3
COL18A1-204ENST00000400337 A0A0J9YWU9 116 aa13.17□□□□□ -0.3
COL18A1-204ENST00000400337 FN1P02751 2386 aaKnown RBP13.16□□□□□ -0.3
COL18A1-204ENST00000400337 Q6ZQY7 126 aa13.16□□□□□ -0.3
COL18A1-204ENST00000400337 LINC00242Q5T6M2 205 aa13.16□□□□□ -0.3
COL18A1-204ENST00000400337 C1orf158Q8N1D5 194 aa13.16□□□□□ -0.3
COL18A1-204ENST00000400337 IGLV4-69A0A075B6H9 119 aa13.15□□□□□ -0.3
COL18A1-204ENST00000400337 M0R2N4 97 aa13.15□□□□□ -0.3
COL18A1-204ENST00000400337 ATP5EP2Q5VTU8 51 aa13.15□□□□□ -0.3
COL18A1-204ENST00000400337 SMIM11BQ8TCY0 68 aa13.15□□□□□ -0.3
COL18A1-204ENST00000400337 CCKP06307 115 aa13.15□□□□□ -0.3
COL18A1-204ENST00000400337 UQCRQO14949 82 aa13.14□□□□□ -0.31
COL18A1-204ENST00000400337 CHD8Q9HCK8 2581 aa13.14□□□□□ -0.31
COL18A1-204ENST00000400337 LST1O00453 97 aa13.14□□□□□ -0.31
COL18A1-204ENST00000400337 IGKV4-1P06312 121 aa13.14□□□□□ -0.31
COL18A1-204ENST00000400337 M0R378 163 aa13.14□□□□□ -0.31
COL18A1-204ENST00000400337 BRI3O95415 125 aa13.14□□□□□ -0.31
COL18A1-204ENST00000400337 NDUFC2O95298 119 aa13.13□□□□□ -0.31
COL18A1-204ENST00000400337 EML5Q05BV3 1969 aa13.13□□□□□ -0.31
COL18A1-204ENST00000400337 Q8IZM0 81 aa13.13□□□□□ -0.31
COL18A1-204ENST00000400337 COX8CQ7Z4L0 72 aa13.12□□□□□ -0.31
COL18A1-204ENST00000400337 SPTBN4Q9H254 2564 aa13.12□□□□□ -0.31
COL18A1-204ENST00000400337 CYSRT1A8MQ03 144 aa13.11□□□□□ -0.31
COL18A1-204ENST00000400337 C3orf84H3BNL1 204 aa13.11□□□□□ -0.31
COL18A1-204ENST00000400337 RETNQ9HD89 108 aa13.11□□□□□ -0.31
COL18A1-204ENST00000400337 CHCHD7Q9BUK0 85 aa13.1□□□□□ -0.31
COL18A1-204ENST00000400337 PPDPFQ9H3Y8 114 aa13.1□□□□□ -0.31
COL18A1-204ENST00000400337 RPL37AP8A6NKH3 93 aa13.1□□□□□ -0.31
COL18A1-204ENST00000400337 COX17Q14061 63 aa13.1□□□□□ -0.31
COL18A1-204ENST00000400337 ZNF580Q9UK33 172 aa13.1□□□□□ -0.31
COL18A1-204ENST00000400337 LINC00694P0DN24 101 aa13.09□□□□□ -0.31
COL18A1-204ENST00000400337 SMIM1B2RUZ4 78 aa13.08□□□□□ -0.32
COL18A1-204ENST00000400337 UNQ6190/PRO20217Q6UXQ8 127 aa13.07□□□□□ -0.32
COL18A1-204ENST00000400337 C3orf22Q8N5N4 141 aa13.07□□□□□ -0.32
COL18A1-204ENST00000400337 IGLV4-60A0A075B6I1 120 aa13.07□□□□□ -0.32
COL18A1-204ENST00000400337 ZNF73O43830 326 aaPredicted RBP13.07□□□□□ -0.32
COL18A1-204ENST00000400337 COX6A2Q02221 97 aa13.07□□□□□ -0.32
COL18A1-204ENST00000400337 LOC107984640A0A0U1RRK4 108 aa13.06□□□□□ -0.32
COL18A1-204ENST00000400337 C16orf95Q9H693 158 aa13.06□□□□□ -0.32
COL18A1-204ENST00000400337 DHRS4-AS1Q9P1J3 65 aa13.06□□□□□ -0.32
COL18A1-204ENST00000400337 FHL2Q14192 279 aa13.06□□□□□ -0.32
COL18A1-204ENST00000400337 EXPH5Q8NEV8 1989 aa13.05□□□□□ -0.32
COL18A1-204ENST00000400337 TSPEAR-AS2P59090 65 aa13.05□□□□□ -0.32
COL18A1-204ENST00000400337 A0A096LNJ9 63 aa13.04□□□□□ -0.32
COL18A1-204ENST00000400337 WFDC10BQ8IUB3 73 aa13.04□□□□□ -0.32
COL18A1-204ENST00000400337 LRRK2Q5S007 2527 aa13.04□□□□□ -0.32
COL18A1-204ENST00000400337 FAM236DA0A1B0GTK5 79 aa13.04□□□□□ -0.32
COL18A1-204ENST00000400337 FAM236CP0DP71 79 aa13.04□□□□□ -0.32
COL18A1-204ENST00000400337 C9orf116Q5BN46 136 aaPredicted RBP13.04□□□□□ -0.32
COL18A1-204ENST00000400337 C7orf33Q8WU49 177 aa13.04□□□□□ -0.32
COL18A1-204ENST00000400337 Q6ZSN1 163 aa13.03□□□□□ -0.32
COL18A1-204ENST00000400337 LY6G6CO95867 125 aa13.02□□□□□ -0.33
COL18A1-204ENST00000400337 BRK1Q8WUW1 75 aa13.02□□□□□ -0.33
COL18A1-204ENST00000400337 USP17L23D6RBM5 183 aa13.01□□□□□ -0.33
COL18A1-204ENST00000400337 Q6ZTC4 211 aa13.01□□□□□ -0.33
COL18A1-204ENST00000400337 MUC7Q8TAX7 377 aa13.01□□□□□ -0.33
COL18A1-204ENST00000400337 BEAN1Q3B7T3 259 aa13□□□□□ -0.33
COL18A1-204ENST00000400337 AMELXQ99217 191 aa13□□□□□ -0.33
COL18A1-204ENST00000400337 PKD1L2Q7Z442 2459 aa12.99□□□□□ -0.33
COL18A1-204ENST00000400337 XGP55808 180 aa12.99□□□□□ -0.33
COL18A1-204ENST00000400337 MPLKIPQ8TAP9 179 aa12.99□□□□□ -0.33
COL18A1-204ENST00000400337 ZNF462Q96JM2 2506 aa12.99□□□□□ -0.33
COL18A1-204ENST00000400337 IMUPQ9GZP8 106 aa12.99□□□□□ -0.33
COL18A1-204ENST00000400337 SEC61GP60059 68 aa12.99□□□□□ -0.33
COL18A1-204ENST00000400337 ADAMTS20P59510 1910 aa12.98□□□□□ -0.33
COL18A1-204ENST00000400337 ADAMTSL4-AS1Q5T5F5 129 aa12.98□□□□□ -0.33
COL18A1-204ENST00000400337 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.98□□□□□ -0.33
COL18A1-204ENST00000400337 CSDC2Q9Y534 153 aaKnown RBP12.98□□□□□ -0.33
COL18A1-204ENST00000400337 EGFEM1PQ0D2K5 195 aa12.97□□□□□ -0.33
COL18A1-204ENST00000400337 SPINK6Q6UWN8 80 aa12.97□□□□□ -0.33
COL18A1-204ENST00000400337 SERP2Q8N6R1 65 aa12.97□□□□□ -0.33
COL18A1-204ENST00000400337 PRR3P79522 188 aaKnown RBP12.97□□□□□ -0.33
COL18A1-204ENST00000400337 HRCT1Q6UXD1 115 aa12.97□□□□□ -0.33
COL18A1-204ENST00000400337 MTORP42345 2549 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 264.1 ms