RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 KLK12Q9UKR0 248 aa13.35□□□□□ -0.27
USP48-204ENST00000400301 COX6A2Q02221 97 aa13.34□□□□□ -0.27
USP48-204ENST00000400301 HILS1P60008 231 aa13.34□□□□□ -0.27
USP48-204ENST00000400301 Q9UF83 564 aa13.34□□□□□ -0.27
USP48-204ENST00000400301 TRAV26-1A0A087WT03 109 aa13.33□□□□□ -0.27
USP48-204ENST00000400301 C9orf153Q5TBE3 101 aa13.32□□□□□ -0.28
USP48-204ENST00000400301 MUC4Q99102 2169 aa13.32□□□□□ -0.28
USP48-204ENST00000400301 LST1O00453 97 aa13.32□□□□□ -0.28
USP48-204ENST00000400301 SPAG11BQ08648 103 aa13.32□□□□□ -0.28
USP48-204ENST00000400301 SMIM9A6NGZ8 99 aa13.32□□□□□ -0.28
USP48-204ENST00000400301 SMIM1B2RUZ4 78 aa13.32□□□□□ -0.28
USP48-204ENST00000400301 C11orf72Q8NBR9 251 aa13.32□□□□□ -0.28
USP48-204ENST00000400301 INAFM1C9JVW0 142 aa13.31□□□□□ -0.28
USP48-204ENST00000400301 IBA57-AS1B1ANH7 110 aa13.31□□□□□ -0.28
USP48-204ENST00000400301 IGLV1-51P01701 117 aa13.31□□□□□ -0.28
USP48-204ENST00000400301 XGP55808 180 aa13.31□□□□□ -0.28
USP48-204ENST00000400301 Q8N2B8 174 aa13.31□□□□□ -0.28
USP48-204ENST00000400301 UBL5Q9BZL1 73 aa13.3□□□□□ -0.28
USP48-204ENST00000400301 DPH3Q96FX2 82 aa13.3□□□□□ -0.28
USP48-204ENST00000400301 CXCL5P42830 114 aa13.3□□□□□ -0.28
USP48-204ENST00000400301 LYRM9A8MSI8 78 aa13.29□□□□□ -0.28
USP48-204ENST00000400301 LOC400499M0QZD8 3231 aa13.29□□□□□ -0.28
USP48-204ENST00000400301 ZNF575Q86XF7 245 aa13.29□□□□□ -0.28
USP48-204ENST00000400301 NCR3O14931 201 aa13.29□□□□□ -0.28
USP48-204ENST00000400301 REG3AQ06141 175 aa13.29□□□□□ -0.28
USP48-204ENST00000400301 DMXL2Q8TDJ6 3036 aa13.28□□□□□ -0.28
USP48-204ENST00000400301 SMR3AQ99954 134 aa13.28□□□□□ -0.28
USP48-204ENST00000400301 CHCHD10Q8WYQ3 142 aaPredicted RBP13.28□□□□□ -0.28
USP48-204ENST00000400301 IGKV2D-24A0A075B6R9 120 aa13.27□□□□□ -0.28
USP48-204ENST00000400301 TMEM126AQ9H061 195 aa13.27□□□□□ -0.28
USP48-204ENST00000400301 FAM236AA0A1B0GUQ0 79 aa13.27□□□□□ -0.28
USP48-204ENST00000400301 FAM236BA0A1B0GV22 79 aa13.27□□□□□ -0.28
USP48-204ENST00000400301 CAMK2N2Q96S95 79 aa13.27□□□□□ -0.28
USP48-204ENST00000400301 TRACP01848 142 aa13.27□□□□□ -0.29
USP48-204ENST00000400301 HAMPP81172 84 aa13.26□□□□□ -0.29
USP48-204ENST00000400301 LINC00959A0A1B0GUT2 108 aa13.26□□□□□ -0.29
USP48-204ENST00000400301 LY6G6DO95868 133 aa13.26□□□□□ -0.29
USP48-204ENST00000400301 RNF183Q96D59 192 aa13.26□□□□□ -0.29
USP48-204ENST00000400301 IGKV3D-7A0A0C4DH55 119 aa13.25□□□□□ -0.29
USP48-204ENST00000400301 C1orf43Q9BWL3 253 aa13.25□□□□□ -0.29
USP48-204ENST00000400301 C14orf132Q9NPU4 83 aa13.25□□□□□ -0.29
USP48-204ENST00000400301 CSDC2Q9Y534 153 aaKnown RBP13.25□□□□□ -0.29
USP48-204ENST00000400301 NKAPP1Q8N9T2 125 aa13.24□□□□□ -0.29
USP48-204ENST00000400301 PLA2G2AP14555 144 aa13.24□□□□□ -0.29
USP48-204ENST00000400301 DSCR8Q96T75 97 aa13.24□□□□□ -0.29
USP48-204ENST00000400301 IGLV4-60A0A075B6I1 120 aa13.24□□□□□ -0.29
USP48-204ENST00000400301 SS18L2Q9UHA2 77 aa13.23□□□□□ -0.29
USP48-204ENST00000400301 FSHBP01225 129 aa13.23□□□□□ -0.29
USP48-204ENST00000400301 LINC00643Q86TS7 51 aa13.22□□□□□ -0.29
USP48-204ENST00000400301 CLUHP3Q96NS8 147 aa13.22□□□□□ -0.29
USP48-204ENST00000400301 SLPIP03973 132 aa13.21□□□□□ -0.29
USP48-204ENST00000400301 NDUFV3P56181 108 aaKnown RBP13.21□□□□□ -0.29
USP48-204ENST00000400301 PRO0461Q9UI25 63 aa13.21□□□□□ -0.29
USP48-204ENST00000400301 IGHV4-28A0A0C4DH34 117 aa13.21□□□□□ -0.3
USP48-204ENST00000400301 ATMQ13315 3056 aa13.21□□□□□ -0.3
USP48-204ENST00000400301 SMCPP49901 116 aaPredicted RBP13.2□□□□□ -0.3
USP48-204ENST00000400301 FHL2Q14192 279 aa13.2□□□□□ -0.3
USP48-204ENST00000400301 CCL18P55774 89 aa13.2□□□□□ -0.3
USP48-204ENST00000400301 FLNAP21333 2647 aaKnown RBP13.2□□□□□ -0.3
USP48-204ENST00000400301 RPL18AQ02543 176 aaKnown RBP13.19□□□□□ -0.3
USP48-204ENST00000400301 DMXL1Q9Y485 3027 aa13.18□□□□□ -0.3
USP48-204ENST00000400301 C16orf95Q9H693 158 aa13.18□□□□□ -0.3
USP48-204ENST00000400301 NTM-AS1Q6ZSK4 140 aa13.18□□□□□ -0.3
USP48-204ENST00000400301 SMIM11BQ8TCY0 68 aa13.18□□□□□ -0.3
USP48-204ENST00000400301 JMJD7-PLA2G4BH0Y9G9 81 aa13.18□□□□□ -0.3
USP48-204ENST00000400301 KALRNO60229 2985 aa13.18□□□□□ -0.3
USP48-204ENST00000400301 MIFP14174 115 aa13.17□□□□□ -0.3
USP48-204ENST00000400301 UBE2DNLQ8IWF7 75 aa13.17□□□□□ -0.3
USP48-204ENST00000400301 CD164L2Q6UWJ8 174 aa13.17□□□□□ -0.3
USP48-204ENST00000400301 HECTD1Q9ULT8 2610 aa13.17□□□□□ -0.3
USP48-204ENST00000400301 LINC00526Q96FQ7 95 aa13.16□□□□□ -0.3
USP48-204ENST00000400301 A0A096LNT2 108 aa13.15□□□□□ -0.3
USP48-204ENST00000400301 PSCAO43653 123 aa13.15□□□□□ -0.3
USP48-204ENST00000400301 FHL3Q13643 280 aa13.15□□□□□ -0.3
USP48-204ENST00000400301 HIGD2BQ4VC39 106 aa13.15□□□□□ -0.3
USP48-204ENST00000400301 MRAPQ8TCY5 172 aa13.15□□□□□ -0.3
USP48-204ENST00000400301 TMEM256-PLSCR3K7ERE1 68 aa13.15□□□□□ -0.3
USP48-204ENST00000400301 A0A087WZ39 114 aa13.15□□□□□ -0.3
USP48-204ENST00000400301 KIR2DL5BQ8NHK3 375 aa13.15□□□□□ -0.31
USP48-204ENST00000400301 FAM110AQ9BQ89 295 aa13.15□□□□□ -0.31
USP48-204ENST00000400301 IGLV5-39A0A0G2JS06 123 aa13.14□□□□□ -0.31
USP48-204ENST00000400301 TACC2O95359 2948 aa13.13□□□□□ -0.31
USP48-204ENST00000400301 C6orf99Q4VX62 202 aa13.12□□□□□ -0.31
USP48-204ENST00000400301 LRBAP50851 2863 aa13.12□□□□□ -0.31
USP48-204ENST00000400301 DIRC1Q969H9 104 aa13.12□□□□□ -0.31
USP48-204ENST00000400301 CDIP1Q9H305 208 aa13.12□□□□□ -0.31
USP48-204ENST00000400301 XAGE1AQ9HD64 81 aa13.12□□□□□ -0.31
USP48-204ENST00000400301 ITPR3Q14573 2671 aa13.11□□□□□ -0.31
USP48-204ENST00000400301 Q8IZM0 81 aa13.11□□□□□ -0.31
USP48-204ENST00000400301 A0A1B0GX51 115 aa13.11□□□□□ -0.31
USP48-204ENST00000400301 RBM3P98179 157 aaKnown RBP13.1□□□□□ -0.31
USP48-204ENST00000400301 DEFB105AQ8NG35 78 aa13.09□□□□□ -0.31
USP48-204ENST00000400301 CFAP46Q8IYW2 2715 aa13.09□□□□□ -0.31
USP48-204ENST00000400301 ATOX1O00244 68 aa13.09□□□□□ -0.31
USP48-204ENST00000400301 IGLV5-45A0A087WSX0 123 aa13.09□□□□□ -0.31
USP48-204ENST00000400301 CFAP47Q6ZTR5 3102 aa13.09□□□□□ -0.31
USP48-204ENST00000400301 RPL28P46779 137 aaKnown RBP13.08□□□□□ -0.32
USP48-204ENST00000400301 RMI2Q96E14 147 aa13.08□□□□□ -0.32
USP48-204ENST00000400301 SDIM1Q6ZPB5 146 aa13.08□□□□□ -0.32
USP48-204ENST00000400301 hADV29S1A0JD25 119 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 95.1 ms