RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 NOTCH3Q9UM47 2321 aa9.04□□□□□ -0.96
SHMT1-205ENST00000395684 NIPBLQ6KC79 2804 aaeCLIP9.03□□□□□ -0.96
SHMT1-205ENST00000395684 NF1P21359 2839 aa9.03□□□□□ -0.96
SHMT1-205ENST00000395684 B5MCH6 92 aa9.03□□□□□ -0.96
SHMT1-205ENST00000395684 A0A1W2PRX2 142 aa9.02□□□□□ -0.97
SHMT1-205ENST00000395684 NOP10Q9NPE3 64 aaKnown RBP9.02□□□□□ -0.97
SHMT1-205ENST00000395684 SS18L2Q9UHA2 77 aa9.02□□□□□ -0.97
SHMT1-205ENST00000395684 CCDC168Q8NDH2 2452 aa9.02□□□□□ -0.97
SHMT1-205ENST00000395684 CCDC179H3BU77 68 aa9.01□□□□□ -0.97
SHMT1-205ENST00000395684 MRPL23Q16540 153 aaKnown RBP9.01□□□□□ -0.97
SHMT1-205ENST00000395684 TRAV25A0A0B4J276 109 aa9.01□□□□□ -0.97
SHMT1-205ENST00000395684 SONP18583 2426 aaKnown RBP9.01□□□□□ -0.97
SHMT1-205ENST00000395684 FLNBO75369 2602 aaKnown RBP9.01□□□□□ -0.97
SHMT1-205ENST00000395684 COPS9Q8WXC6 57 aa9□□□□□ -0.97
SHMT1-205ENST00000395684 APCP25054 2843 aa9□□□□□ -0.97
SHMT1-205ENST00000395684 GIG44P09565 113 aaPredicted RBP9□□□□□ -0.97
SHMT1-205ENST00000395684 DEFB113Q30KQ7 82 aa9□□□□□ -0.97
SHMT1-205ENST00000395684 FAM218AQ96MZ4 157 aa9□□□□□ -0.97
SHMT1-205ENST00000395684 LOC100131303A0A0U1RQF7 123 aa8.99□□□□□ -0.97
SHMT1-205ENST00000395684 GAGE7O76087 117 aa8.99□□□□□ -0.97
SHMT1-205ENST00000395684 GAGE12FP0CL80 117 aa8.99□□□□□ -0.97
SHMT1-205ENST00000395684 GAGE12GP0CL81 117 aa8.99□□□□□ -0.97
SHMT1-205ENST00000395684 GAGE12IP0CL82 117 aa8.99□□□□□ -0.97
SHMT1-205ENST00000395684 HERV-K104P63124 156 aa8.99□□□□□ -0.97
SHMT1-205ENST00000395684 JMJD1CQ15652 2540 aa8.99□□□□□ -0.97
SHMT1-205ENST00000395684 SETXQ7Z333 2677 aaKnown RBP8.99□□□□□ -0.97
SHMT1-205ENST00000395684 PLAC8L1A1L4L8 177 aa8.98□□□□□ -0.97
SHMT1-205ENST00000395684 CCL24O00175 119 aa8.98□□□□□ -0.97
SHMT1-205ENST00000395684 TMEM243Q9BU79 118 aa8.98□□□□□ -0.97
SHMT1-205ENST00000395684 C22orf24Q9Y442 160 aa8.98□□□□□ -0.97
SHMT1-205ENST00000395684 UBE2L6O14933 153 aa8.98□□□□□ -0.97
SHMT1-205ENST00000395684 TRACP01848 142 aa8.97□□□□□ -0.97
SHMT1-205ENST00000395684 PLA2G2AP14555 144 aa8.97□□□□□ -0.97
SHMT1-205ENST00000395684 WFDC10AQ9H1F0 79 aa8.97□□□□□ -0.97
SHMT1-205ENST00000395684 SETD2Q9BYW2 2564 aaPredicted RBP8.97□□□□□ -0.97
SHMT1-205ENST00000395684 BAALC-AS2P0C853 105 aa8.97□□□□□ -0.97
SHMT1-205ENST00000395684 TRBV7-7A0A0K0K1E9 115 aa8.96□□□□□ -0.97
SHMT1-205ENST00000395684 HIST2H2BCQ6DN03 193 aa8.96□□□□□ -0.97
SHMT1-205ENST00000395684 KRTAP1-3Q8IUG1 177 aa8.96□□□□□ -0.97
SHMT1-205ENST00000395684 TRGV2A0A075B6R0 118 aa8.96□□□□□ -0.98
SHMT1-205ENST00000395684 DNAJC9-AS1A6NH13 148 aa8.96□□□□□ -0.98
SHMT1-205ENST00000395684 MIR7-3HGQ8N6C7 128 aa8.96□□□□□ -0.98
SHMT1-205ENST00000395684 LINC00337Q8N6G1 96 aa8.96□□□□□ -0.98
SHMT1-205ENST00000395684 SMCR5Q8TEV8 140 aa8.96□□□□□ -0.98
SHMT1-205ENST00000395684 IGKV2-28A0A075B6P5 120 aa8.95□□□□□ -0.98
SHMT1-205ENST00000395684 IGKV3OR2-268A0A0C4DH90 116 aa8.95□□□□□ -0.98
SHMT1-205ENST00000395684 IGKV2D-28P01615 120 aa8.95□□□□□ -0.98
SHMT1-205ENST00000395684 COX7B2Q8TF08 81 aa8.95□□□□□ -0.98
SHMT1-205ENST00000395684 PPDPFQ9H3Y8 114 aa8.95□□□□□ -0.98
SHMT1-205ENST00000395684 ACYP1P07311 99 aa8.95□□□□□ -0.98
SHMT1-205ENST00000395684 TMEM86BQ8N661 226 aa8.95□□□□□ -0.98
SHMT1-205ENST00000395684 CHCHD5Q9BSY4 110 aa8.95□□□□□ -0.98
SHMT1-205ENST00000395684 TOMM7Q9P0U1 55 aa8.95□□□□□ -0.98
SHMT1-205ENST00000395684 IGLV4-60A0A075B6I1 120 aa8.94□□□□□ -0.98
SHMT1-205ENST00000395684 Q9HAA7 133 aa8.94□□□□□ -0.98
SHMT1-205ENST00000395684 ESM1Q9NQ30 184 aa8.94□□□□□ -0.98
SHMT1-205ENST00000395684 RPL35AP18077 110 aaKnown RBP8.94□□□□□ -0.98
SHMT1-205ENST00000395684 RPL28P46779 137 aaKnown RBP8.94□□□□□ -0.98
SHMT1-205ENST00000395684 LRRC75A-AS1Q8N1F1 130 aa8.94□□□□□ -0.98
SHMT1-205ENST00000395684 ITPR3Q14573 2671 aa8.93□□□□□ -0.98
SHMT1-205ENST00000395684 TRBV6-4A0A1B0GX49 114 aa8.93□□□□□ -0.98
SHMT1-205ENST00000395684 C16orf74Q96GX8 76 aa8.93□□□□□ -0.98
SHMT1-205ENST00000395684 UNC79Q9P2D8 2635 aa8.93□□□□□ -0.98
SHMT1-205ENST00000395684 TRAV13-2A0A0B4J235 113 aa8.93□□□□□ -0.98
SHMT1-205ENST00000395684 SND1-IT1Q9HBX3 110 aa8.93□□□□□ -0.98
SHMT1-205ENST00000395684 PF4P02776 101 aa8.92□□□□□ -0.98
SHMT1-205ENST00000395684 IGHV3OR16-9A0A0B4J2B5 98 aa8.92□□□□□ -0.98
SHMT1-205ENST00000395684 CRPP02741 224 aa8.92□□□□□ -0.98
SHMT1-205ENST00000395684 CSNK1G2-AS1Q8NCQ2 148 aa8.92□□□□□ -0.98
SHMT1-205ENST00000395684 C19orf73Q9NVV2 129 aa8.92□□□□□ -0.98
SHMT1-205ENST00000395684 TRGV4A0A0C4DH28 118 aa8.91□□□□□ -0.98
SHMT1-205ENST00000395684 LINC00158P58513 81 aa8.91□□□□□ -0.98
SHMT1-205ENST00000395684 FAM222AQ5U5X8 452 aa8.91□□□□□ -0.98
SHMT1-205ENST00000395684 SDIM1Q6ZPB5 146 aa8.91□□□□□ -0.98
SHMT1-205ENST00000395684 OVOL2Q9BRP0 275 aa8.91□□□□□ -0.98
SHMT1-205ENST00000395684 TRBV6-8A0A0A6YYG3 113 aa8.9□□□□□ -0.98
SHMT1-205ENST00000395684 FHL2Q14192 279 aa8.9□□□□□ -0.98
SHMT1-205ENST00000395684 CCL18P55774 89 aa8.9□□□□□ -0.98
SHMT1-205ENST00000395684 SMIM11BQ8TCY0 68 aa8.9□□□□□ -0.98
SHMT1-205ENST00000395684 A0A087WYN8 130 aa8.89□□□□□ -0.99
SHMT1-205ENST00000395684 MALP21145 153 aa8.89□□□□□ -0.99
SHMT1-205ENST00000395684 LINC00643Q86TS7 51 aa8.89□□□□□ -0.99
SHMT1-205ENST00000395684 WFDC11Q8NEX6 87 aa8.89□□□□□ -0.99
SHMT1-205ENST00000395684 IMUPQ9GZP8 106 aa8.89□□□□□ -0.99
SHMT1-205ENST00000395684 FAM236AA0A1B0GUQ0 79 aa8.89□□□□□ -0.99
SHMT1-205ENST00000395684 FAM236BA0A1B0GV22 79 aa8.89□□□□□ -0.99
SHMT1-205ENST00000395684 C5orf38Q86SI9 138 aa8.89□□□□□ -0.99
SHMT1-205ENST00000395684 A0A087WZ39 114 aa8.88□□□□□ -0.99
SHMT1-205ENST00000395684 C9orf129Q5T035 196 aaKnown RBP8.88□□□□□ -0.99
SHMT1-205ENST00000395684 ACANP16112 2415 aa8.88□□□□□ -0.99
SHMT1-205ENST00000395684 IGLV1-51P01701 117 aa8.87□□□□□ -0.99
SHMT1-205ENST00000395684 PFN2P35080 140 aa8.87□□□□□ -0.99
SHMT1-205ENST00000395684 CMC4P56277 68 aaPredicted RBP8.87□□□□□ -0.99
SHMT1-205ENST00000395684 LINC01006Q8NI28 216 aa8.87□□□□□ -0.99
SHMT1-205ENST00000395684 FLNAP21333 2647 aaKnown RBP8.87□□□□□ -0.99
SHMT1-205ENST00000395684 GAGE2AQ6NT46 116 aa8.87□□□□□ -0.99
SHMT1-205ENST00000395684 IBA57-AS1B1ANH7 110 aa8.87□□□□□ -0.99
SHMT1-205ENST00000395684 INAFM2P0DMQ5 153 aa8.87□□□□□ -0.99
SHMT1-205ENST00000395684 ATP5G1P05496 136 aa8.86□□□□□ -0.99
SHMT1-205ENST00000395684 FAM110AQ9BQ89 295 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms