RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 A0A0J9YY99 117 aa7.1□□□□□ -1.27
VPS53-202ENST00000389040 TINCRA0A1B0GVN0 87 aa7.1□□□□□ -1.27
VPS53-202ENST00000389040 TRBV6-4A0A1B0GX49 114 aa7.1□□□□□ -1.27
VPS53-202ENST00000389040 A0A1W2PPM0 123 aa7.1□□□□□ -1.27
VPS53-202ENST00000389040 GAGE12JA6NER3 117 aa7.1□□□□□ -1.27
VPS53-202ENST00000389040 GAGE4Q13068 117 aa7.1□□□□□ -1.27
VPS53-202ENST00000389040 GAGE5Q13069 117 aa7.1□□□□□ -1.27
VPS53-202ENST00000389040 GAGE13Q4V321 117 aa7.1□□□□□ -1.27
VPS53-202ENST00000389040 IGLL5B9A064 214 aa7.09□□□□□ -1.27
VPS53-202ENST00000389040 DGAT2L7PQ6IED9 249 aa7.09□□□□□ -1.27
VPS53-202ENST00000389040 OR5A1Q8NGJ0 315 aa7.09□□□□□ -1.27
VPS53-202ENST00000389040 IGHV3-64A0A075B6Q5 118 aa7.09□□□□□ -1.27
VPS53-202ENST00000389040 TRGV4A0A0C4DH28 118 aa7.09□□□□□ -1.27
VPS53-202ENST00000389040 GAGE10A6NGK3 116 aa7.09□□□□□ -1.27
VPS53-202ENST00000389040 HTN3P15516 51 aa7.09□□□□□ -1.27
VPS53-202ENST00000389040 SRSF9Q13242 221 aaKnown RBP eCLIP7.09□□□□□ -1.27
VPS53-202ENST00000389040 NTM-AS1Q6ZSK4 140 aa7.09□□□□□ -1.27
VPS53-202ENST00000389040 GTF2H5Q6ZYL4 71 aa7.09□□□□□ -1.27
VPS53-202ENST00000389040 SPANXB1Q9NS25 103 aaPredicted RBP7.09□□□□□ -1.27
VPS53-202ENST00000389040 A0A1B0GWB2 263 aa7.08□□□□□ -1.28
VPS53-202ENST00000389040 K7EP34 96 aa7.08□□□□□ -1.28
VPS53-202ENST00000389040 FABP2P12104 132 aa7.08□□□□□ -1.28
VPS53-202ENST00000389040 UBE2D1P51668 147 aa7.08□□□□□ -1.28
VPS53-202ENST00000389040 FHL2Q14192 279 aa7.08□□□□□ -1.28
VPS53-202ENST00000389040 SH2D6Q7Z4S9 175 aa7.08□□□□□ -1.28
VPS53-202ENST00000389040 GTSF1LQ9H1H1 148 aa7.08□□□□□ -1.28
VPS53-202ENST00000389040 APLNQ9ULZ1 77 aa7.08□□□□□ -1.28
VPS53-202ENST00000389040 LINC00694P0DN24 101 aa7.07□□□□□ -1.28
VPS53-202ENST00000389040 IGHV3-30-3P0DP02 117 aa7.07□□□□□ -1.28
VPS53-202ENST00000389040 CSDC2Q9Y534 153 aaKnown RBP7.07□□□□□ -1.28
VPS53-202ENST00000389040 TRAV26-1A0A087WT03 109 aa7.07□□□□□ -1.28
VPS53-202ENST00000389040 IGHV1-58A0A0C4DH39 117 aa7.07□□□□□ -1.28
VPS53-202ENST00000389040 LOC100131303A0A0U1RQF7 123 aa7.07□□□□□ -1.28
VPS53-202ENST00000389040 SMAGPQ0VAQ4 97 aa7.07□□□□□ -1.28
VPS53-202ENST00000389040 GEMIN7Q9H840 131 aaKnown RBP7.07□□□□□ -1.28
VPS53-202ENST00000389040 SPCS1Q9Y6A9 102 aa7.07□□□□□ -1.28
VPS53-202ENST00000389040 PAX4O43316 350 aa7.06□□□□□ -1.28
VPS53-202ENST00000389040 IGHV3-30P01768 117 aa7.06□□□□□ -1.28
VPS53-202ENST00000389040 IGHV3-30-5P0DP03 117 aa7.06□□□□□ -1.28
VPS53-202ENST00000389040 IGLV5-45A0A087WSX0 123 aa7.05□□□□□ -1.28
VPS53-202ENST00000389040 TRAV8-3A0A0A6YYJ7 113 aa7.05□□□□□ -1.28
VPS53-202ENST00000389040 UBE2L6O14933 153 aa7.05□□□□□ -1.28
VPS53-202ENST00000389040 TIRAPP58753 221 aa7.05□□□□□ -1.28
VPS53-202ENST00000389040 MRPL23Q16540 153 aaKnown RBP7.05□□□□□ -1.28
VPS53-202ENST00000389040 VSIG2Q96IQ7 327 aa7.05□□□□□ -1.28
VPS53-202ENST00000389040 TMEM243Q9BU79 118 aa7.05□□□□□ -1.28
VPS53-202ENST00000389040 SPINK8P0C7L1 97 aa7.05□□□□□ -1.28
VPS53-202ENST00000389040 FAM19A3Q7Z5A8 133 aa7.05□□□□□ -1.28
VPS53-202ENST00000389040 C10orf126Q8N4M7 172 aa7.05□□□□□ -1.28
VPS53-202ENST00000389040 ICOSQ9Y6W8 199 aa7.05□□□□□ -1.28
VPS53-202ENST00000389040 CSMD3Q7Z407 3707 aa7.04□□□□□ -1.28
VPS53-202ENST00000389040 H7C423 109 aa7.04□□□□□ -1.28
VPS53-202ENST00000389040 HERVK_113P63121 156 aa7.04□□□□□ -1.28
VPS53-202ENST00000389040 CDC42SE2Q9NRR3 84 aa7.04□□□□□ -1.28
VPS53-202ENST00000389040 CDKN2A-AS1Q9UH64 79 aa7.04□□□□□ -1.28
VPS53-202ENST00000389040 A0A0J9YXY3 114 aa7.03□□□□□ -1.28
VPS53-202ENST00000389040 TMEM238C9JI98 176 aa7.03□□□□□ -1.28
VPS53-202ENST00000389040 CCL18P55774 89 aa7.03□□□□□ -1.28
VPS53-202ENST00000389040 LINC00242Q5T6M2 205 aa7.03□□□□□ -1.28
VPS53-202ENST00000389040 TMEM101Q96IK0 257 aa7.03□□□□□ -1.28
VPS53-202ENST00000389040 COX6A2Q02221 97 aa7.03□□□□□ -1.28
VPS53-202ENST00000389040 NDUFA12Q9UI09 145 aa7.03□□□□□ -1.28
VPS53-202ENST00000389040 TRBV6-8A0A0A6YYG3 113 aa7.02□□□□□ -1.29
VPS53-202ENST00000389040 A0A096LPF7 62 aa7.01□□□□□ -1.29
VPS53-202ENST00000389040 TRAV13-1A0A0B4J241 112 aa7.01□□□□□ -1.29
VPS53-202ENST00000389040 LCE6AA0A183 80 aa7.01□□□□□ -1.29
VPS53-202ENST00000389040 LINC00476Q8WZB0 136 aa7.01□□□□□ -1.29
VPS53-202ENST00000389040 DYNC2H1Q8NCM8 4307 aaKnown RBP7.01□□□□□ -1.29
VPS53-202ENST00000389040 IGLV5-39A0A0G2JS06 123 aa7.01□□□□□ -1.29
VPS53-202ENST00000389040 APOMO95445 188 aa7.01□□□□□ -1.29
VPS53-202ENST00000389040 GYPEP15421 78 aa7.01□□□□□ -1.29
VPS53-202ENST00000389040 LITAFQ99732 161 aa7.01□□□□□ -1.29
VPS53-202ENST00000389040 CFC1BP0CG36 223 aa7□□□□□ -1.29
VPS53-202ENST00000389040 CFC1P0CG37 223 aa7□□□□□ -1.29
VPS53-202ENST00000389040 RPL24P83731 157 aaKnown RBP7□□□□□ -1.29
VPS53-202ENST00000389040 GAGE6Q13070 117 aa7□□□□□ -1.29
VPS53-202ENST00000389040 NDUFA1O15239 70 aa6.99□□□□□ -1.29
VPS53-202ENST00000389040 TSPAN13O95857 204 aa6.99□□□□□ -1.29
VPS53-202ENST00000389040 MUSTN1Q8IVN3 82 aa6.99□□□□□ -1.29
VPS53-202ENST00000389040 CHCHD5Q9BSY4 110 aa6.99□□□□□ -1.29
VPS53-202ENST00000389040 UPK3BQ9BT76 320 aa6.99□□□□□ -1.29
VPS53-202ENST00000389040 TENM2Q9NT68 2774 aa6.99□□□□□ -1.29
VPS53-202ENST00000389040 A4D1N5 150 aa6.99□□□□□ -1.29
VPS53-202ENST00000389040 SMIM1B2RUZ4 78 aa6.99□□□□□ -1.29
VPS53-202ENST00000389040 ATP6V0E2Q8NHE4 81 aa6.99□□□□□ -1.29
VPS53-202ENST00000389040 SPANXDQ9BXN6 97 aa6.99□□□□□ -1.29
VPS53-202ENST00000389040 SPANXCQ9NY87 97 aa6.99□□□□□ -1.29
VPS53-202ENST00000389040 STARD9Q9P2P6 4700 aa6.98□□□□□ -1.29
VPS53-202ENST00000389040 UBE2DNLQ8IWF7 75 aa6.98□□□□□ -1.29
VPS53-202ENST00000389040 TIMM17BO60830 172 aa6.97□□□□□ -1.29
VPS53-202ENST00000389040 LY6G6CO95867 125 aa6.97□□□□□ -1.29
VPS53-202ENST00000389040 MIAQ16674 131 aa6.97□□□□□ -1.29
VPS53-202ENST00000389040 ESRGQ1W209 222 aa6.97□□□□□ -1.29
VPS53-202ENST00000389040 ADAMTSL4-AS1Q5T5F5 129 aa6.97□□□□□ -1.29
VPS53-202ENST00000389040 LYPD5Q6UWN5 251 aa6.97□□□□□ -1.29
VPS53-202ENST00000389040 PRO1854Q9UHT4 67 aa6.97□□□□□ -1.29
VPS53-202ENST00000389040 IGLV4-60A0A075B6I1 120 aa6.97□□□□□ -1.29
VPS53-202ENST00000389040 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.97□□□□□ -1.29
VPS53-202ENST00000389040 A0A0B4J2C4 111 aa6.97□□□□□ -1.29
VPS53-202ENST00000389040 OCIAD2Q56VL3 154 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms