RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 LY6DQ14210 128 aa8.66□□□□□ -1.02
PTPN1-201ENST00000371621 PSMG3-AS1Q96PY0 264 aa8.66□□□□□ -1.02
PTPN1-201ENST00000371621 COL4A2P08572 1712 aa8.66□□□□□ -1.02
PTPN1-201ENST00000371621 NANOS2P60321 138 aaKnown RBP8.66□□□□□ -1.02
PTPN1-201ENST00000371621 APRG1Q8IVJ8 170 aa8.66□□□□□ -1.02
PTPN1-201ENST00000371621 PSPHP1O15172 72 aa8.65□□□□□ -1.02
PTPN1-201ENST00000371621 KALRNO60229 2985 aa8.65□□□□□ -1.02
PTPN1-201ENST00000371621 F8W735 103 aaPredicted RBP8.65□□□□□ -1.03
PTPN1-201ENST00000371621 EIF4EBP3O60516 100 aaPredicted RBP8.65□□□□□ -1.03
PTPN1-201ENST00000371621 MRPS36P82909 103 aaKnown RBP8.65□□□□□ -1.03
PTPN1-201ENST00000371621 MRGPRG-AS1Q2M3A8 158 aa8.65□□□□□ -1.03
PTPN1-201ENST00000371621 SS18Q15532 418 aa8.64□□□□□ -1.03
PTPN1-201ENST00000371621 FAM218AQ96MZ4 157 aa8.64□□□□□ -1.03
PTPN1-201ENST00000371621 ANKRD17O75179 2603 aaKnown RBP8.64□□□□□ -1.03
PTPN1-201ENST00000371621 A0A0J9YX75 114 aa8.64□□□□□ -1.03
PTPN1-201ENST00000371621 PF4P02776 101 aa8.64□□□□□ -1.03
PTPN1-201ENST00000371621 PMAIP1Q13794 54 aa8.64□□□□□ -1.03
PTPN1-201ENST00000371621 ANKRD11Q6UB99 2663 aaPredicted RBP8.64□□□□□ -1.03
PTPN1-201ENST00000371621 MTORP42345 2549 aa8.63□□□□□ -1.03
PTPN1-201ENST00000371621 A0A087WZ39 114 aa8.63□□□□□ -1.03
PTPN1-201ENST00000371621 TRBV7-6A0A0J9YX20 115 aa8.63□□□□□ -1.03
PTPN1-201ENST00000371621 NREPQ16612 68 aa8.63□□□□□ -1.03
PTPN1-201ENST00000371621 DCANP1Q8TF63 244 aa8.63□□□□□ -1.03
PTPN1-201ENST00000371621 POLQO75417 2590 aa8.63□□□□□ -1.03
PTPN1-201ENST00000371621 LINC01546A6NGU7 62 aa8.63□□□□□ -1.03
PTPN1-201ENST00000371621 GNLYP22749 145 aa8.63□□□□□ -1.03
PTPN1-201ENST00000371621 RPL28P46779 137 aaKnown RBP8.63□□□□□ -1.03
PTPN1-201ENST00000371621 DEFB136Q30KP8 78 aa8.63□□□□□ -1.03
PTPN1-201ENST00000371621 LINC00474Q9P2X8 69 aa8.63□□□□□ -1.03
PTPN1-201ENST00000371621 COX8CQ7Z4L0 72 aa8.62□□□□□ -1.03
PTPN1-201ENST00000371621 NOP10Q9NPE3 64 aaKnown RBP8.62□□□□□ -1.03
PTPN1-201ENST00000371621 TRBV6-5A0A0K0K1A5 114 aa8.62□□□□□ -1.03
PTPN1-201ENST00000371621 MIFP14174 115 aa8.62□□□□□ -1.03
PTPN1-201ENST00000371621 COX6A2Q02221 97 aa8.62□□□□□ -1.03
PTPN1-201ENST00000371621 PRR3P79522 188 aaKnown RBP8.61□□□□□ -1.03
PTPN1-201ENST00000371621 C6orf99Q4VX62 202 aa8.61□□□□□ -1.03
PTPN1-201ENST00000371621 SIRPDQ9H106 197 aa8.61□□□□□ -1.03
PTPN1-201ENST00000371621 IL17DQ8TAD2 202 aa8.61□□□□□ -1.03
PTPN1-201ENST00000371621 C9orf85Q96MD7 179 aa8.61□□□□□ -1.03
PTPN1-201ENST00000371621 SPTBN4Q9H254 2564 aa8.6□□□□□ -1.03
PTPN1-201ENST00000371621 PCSK5Q92824 1860 aa8.6□□□□□ -1.03
PTPN1-201ENST00000371621 TRAV7A0A075B6U4 112 aa8.6□□□□□ -1.03
PTPN1-201ENST00000371621 Q6ZTI0 123 aa8.6□□□□□ -1.03
PTPN1-201ENST00000371621 Q8N3U1 123 aa8.6□□□□□ -1.03
PTPN1-201ENST00000371621 C2orf48Q96LS8 159 aa8.6□□□□□ -1.03
PTPN1-201ENST00000371621 ZFP36P26651 326 aaKnown RBP8.6□□□□□ -1.03
PTPN1-201ENST00000371621 IGF2-ASQ6U949 168 aa8.6□□□□□ -1.03
PTPN1-201ENST00000371621 TRBV10-1A0A0K0K1A3 114 aa8.59□□□□□ -1.03
PTPN1-201ENST00000371621 ATP5EP2Q5VTU8 51 aa8.59□□□□□ -1.03
PTPN1-201ENST00000371621 UBE2D4Q9Y2X8 147 aa8.59□□□□□ -1.03
PTPN1-201ENST00000371621 ADGRG4Q8IZF6 3080 aa8.59□□□□□ -1.03
PTPN1-201ENST00000371621 CYSTM1Q9H1C7 97 aa8.59□□□□□ -1.03
PTPN1-201ENST00000371621 CELA1Q9UNI1 258 aa8.59□□□□□ -1.03
PTPN1-201ENST00000371621 CCKP06307 115 aa8.58□□□□□ -1.04
PTPN1-201ENST00000371621 TACC2O95359 2948 aa8.58□□□□□ -1.04
PTPN1-201ENST00000371621 CCL18P55774 89 aa8.58□□□□□ -1.04
PTPN1-201ENST00000371621 FAM222AQ5U5X8 452 aa8.58□□□□□ -1.04
PTPN1-201ENST00000371621 AMELXQ99217 191 aa8.58□□□□□ -1.04
PTPN1-201ENST00000371621 LINC00242Q5T6M2 205 aa8.57□□□□□ -1.04
PTPN1-201ENST00000371621 LINC01561Q8N1V8 128 aa8.57□□□□□ -1.04
PTPN1-201ENST00000371621 LINC00337Q8N6G1 96 aa8.57□□□□□ -1.04
PTPN1-201ENST00000371621 Q9UF83 564 aa8.57□□□□□ -1.04
PTPN1-201ENST00000371621 ANGP03950 147 aaKnown RBP8.57□□□□□ -1.04
PTPN1-201ENST00000371621 C5orf56Q8N8D9 126 aa8.57□□□□□ -1.04
PTPN1-201ENST00000371621 LY6LH3BQJ8 138 aa8.56□□□□□ -1.04
PTPN1-201ENST00000371621 ACANP16112 2415 aa8.56□□□□□ -1.04
PTPN1-201ENST00000371621 MAPK1IP1LQ8NDC0 245 aa8.56□□□□□ -1.04
PTPN1-201ENST00000371621 ESM1Q9NQ30 184 aa8.56□□□□□ -1.04
PTPN1-201ENST00000371621 C3orf84H3BNL1 204 aa8.55□□□□□ -1.04
PTPN1-201ENST00000371621 Q6ZQY7 126 aa8.55□□□□□ -1.04
PTPN1-201ENST00000371621 CCL19Q99731 98 aa8.55□□□□□ -1.04
PTPN1-201ENST00000371621 SMIM1B2RUZ4 78 aa8.54□□□□□ -1.04
PTPN1-201ENST00000371621 A8MTW9 85 aa8.54□□□□□ -1.04
PTPN1-201ENST00000371621 Q8N9L7 120 aa8.54□□□□□ -1.04
PTPN1-201ENST00000371621 SMG1Q96Q15 3661 aaKnown RBP8.54□□□□□ -1.04
PTPN1-201ENST00000371621 BPY2O14599 106 aa8.54□□□□□ -1.04
PTPN1-201ENST00000371621 NDUFC1O43677 76 aa8.54□□□□□ -1.04
PTPN1-201ENST00000371621 CHD8Q9HCK8 2581 aa8.54□□□□□ -1.04
PTPN1-201ENST00000371621 AKAP13Q12802 2813 aa8.54□□□□□ -1.04
PTPN1-201ENST00000371621 KLLNB2CW77 178 aa8.53□□□□□ -1.04
PTPN1-201ENST00000371621 C19orf84I3L1E1 186 aa8.53□□□□□ -1.04
PTPN1-201ENST00000371621 LINC00315P59091 139 aa8.53□□□□□ -1.04
PTPN1-201ENST00000371621 KIF25-AS1Q9Y6Z4 181 aa8.53□□□□□ -1.04
PTPN1-201ENST00000371621 HIGD2BQ4VC39 106 aa8.53□□□□□ -1.04
PTPN1-201ENST00000371621 FAM19A3Q7Z5A8 133 aa8.53□□□□□ -1.04
PTPN1-201ENST00000371621 COL12A1Q99715 3063 aa8.53□□□□□ -1.04
PTPN1-201ENST00000371621 K7EQD1 137 aa8.52□□□□□ -1.04
PTPN1-201ENST00000371621 WIPF1O43516 503 aa8.52□□□□□ -1.04
PTPN1-201ENST00000371621 RAI1Q7Z5J4 1906 aaPredicted RBP8.52□□□□□ -1.05
PTPN1-201ENST00000371621 CHKB-CPT1BH3BT56 60 aa8.52□□□□□ -1.05
PTPN1-201ENST00000371621 SLURP1P55000 103 aa8.52□□□□□ -1.05
PTPN1-201ENST00000371621 LINC00269Q8N2A0 174 aa8.52□□□□□ -1.05
PTPN1-201ENST00000371621 RELNP78509 3460 aa8.52□□□□□ -1.05
PTPN1-201ENST00000371621 IGHV4-38-2P0DP08 117 aa8.51□□□□□ -1.05
PTPN1-201ENST00000371621 NTM-AS1Q6ZSK4 140 aa8.51□□□□□ -1.05
PTPN1-201ENST00000371621 TMEM254Q8TBM7 123 aa8.51□□□□□ -1.05
PTPN1-201ENST00000371621 LITAFQ99732 161 aa8.51□□□□□ -1.05
PTPN1-201ENST00000371621 FAM30AQ9NZY2 134 aa8.51□□□□□ -1.05
PTPN1-201ENST00000371621 ODF3BA8MYP8 253 aa8.51□□□□□ -1.05
PTPN1-201ENST00000371621 F8WDY8 70 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms