RNA–Protein interactions for RNA: ENST00000369746.2

UBE3D-202, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 2,740 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-202ENST00000369746 RYR3Q15413 4870 aa3.62□□□□□ -1.83
UBE3D-202ENST00000369746 BOD1L1Q8NFC6 3051 aa3.62□□□□□ -1.83
UBE3D-202ENST00000369746 ATP6V0E1O15342 81 aa3.62□□□□□ -1.83
UBE3D-202ENST00000369746 RNASE4P34096 147 aaKnown RBP3.62□□□□□ -1.83
UBE3D-202ENST00000369746 CASC10Q5T4H9 136 aa3.62□□□□□ -1.83
UBE3D-202ENST00000369746 FAM223AQ8IWN6 122 aa3.62□□□□□ -1.83
UBE3D-202ENST00000369746 IGHV4-4A0A075B6R2 117 aa3.61□□□□□ -1.83
UBE3D-202ENST00000369746 IGKV1OR2-108A0A075B7D4 117 aa3.61□□□□□ -1.83
UBE3D-202ENST00000369746 TMEM30CPA0ZSE6 113 aa3.61□□□□□ -1.83
UBE3D-202ENST00000369746 IGIPA6NJ69 53 aa3.61□□□□□ -1.83
UBE3D-202ENST00000369746 ZFP36P26651 326 aaKnown RBP3.61□□□□□ -1.83
UBE3D-202ENST00000369746 CNEP1R1Q8N9A8 125 aa3.61□□□□□ -1.83
UBE3D-202ENST00000369746 RP1L1Q8IWN7 2480 aaPredicted RBP3.61□□□□□ -1.83
UBE3D-202ENST00000369746 STAB1Q9NY15 2570 aa3.61□□□□□ -1.83
UBE3D-202ENST00000369746 BLCAPP62952 87 aa3.61□□□□□ -1.83
UBE3D-202ENST00000369746 ESRGQ1W209 222 aa3.61□□□□□ -1.83
UBE3D-202ENST00000369746 LINC00242Q5T6M2 205 aa3.61□□□□□ -1.83
UBE3D-202ENST00000369746 PATE2Q6UY27 113 aa3.61□□□□□ -1.83
UBE3D-202ENST00000369746 ZNF580Q9UK33 172 aa3.61□□□□□ -1.83
UBE3D-202ENST00000369746 NIPBLQ6KC79 2804 aaeCLIP3.61□□□□□ -1.83
UBE3D-202ENST00000369746 SH2D1AO60880 128 aa3.6□□□□□ -1.83
UBE3D-202ENST00000369746 PRM2P04554 102 aa3.6□□□□□ -1.83
UBE3D-202ENST00000369746 FAM53AQ6NSI3 398 aaPredicted RBP3.6□□□□□ -1.83
UBE3D-202ENST00000369746 C18orf65Q6ZTR6 163 aa3.6□□□□□ -1.83
UBE3D-202ENST00000369746 C20orf197Q8N268 126 aa3.6□□□□□ -1.83
UBE3D-202ENST00000369746 NRACQ8N912 160 aa3.6□□□□□ -1.83
UBE3D-202ENST00000369746 KLF14Q8TD94 323 aaPredicted RBP3.6□□□□□ -1.83
UBE3D-202ENST00000369746 DIRC1Q969H9 104 aa3.6□□□□□ -1.83
UBE3D-202ENST00000369746 ZFHX3Q15911 3703 aa3.6□□□□□ -1.83
UBE3D-202ENST00000369746 DNAL4O96015 105 aa3.6□□□□□ -1.83
UBE3D-202ENST00000369746 S100A4P26447 101 aaKnown RBP3.6□□□□□ -1.83
UBE3D-202ENST00000369746 PDE6HQ13956 83 aa3.6□□□□□ -1.83
UBE3D-202ENST00000369746 MUSTN1Q8IVN3 82 aa3.6□□□□□ -1.83
UBE3D-202ENST00000369746 SMIM2Q9BVW6 85 aa3.6□□□□□ -1.83
UBE3D-202ENST00000369746 ZNF702PQ9H963 129 aa3.6□□□□□ -1.83
UBE3D-202ENST00000369746 ATRQ13535 2644 aa3.6□□□□□ -1.83
UBE3D-202ENST00000369746 IGKV3-15P01624 115 aa3.59□□□□□ -1.83
UBE3D-202ENST00000369746 CELSR1Q9NYQ6 3014 aa3.59□□□□□ -1.83
UBE3D-202ENST00000369746 HERC2O95714 4834 aa3.59□□□□□ -1.83
UBE3D-202ENST00000369746 DSCAML1Q8TD84 2053 aa3.59□□□□□ -1.83
UBE3D-202ENST00000369746 IGLV4-69A0A075B6H9 119 aa3.59□□□□□ -1.83
UBE3D-202ENST00000369746 I3L3M4 83 aa3.59□□□□□ -1.83
UBE3D-202ENST00000369746 PRSS2P07478 247 aa3.59□□□□□ -1.83
UBE3D-202ENST00000369746 CLEC2BQ92478 149 aa3.59□□□□□ -1.83
UBE3D-202ENST00000369746 TET2Q6N021 2002 aaPredicted RBP3.59□□□□□ -1.84
UBE3D-202ENST00000369746 ALPK2Q86TB3 2170 aa3.58□□□□□ -1.84
UBE3D-202ENST00000369746 CRIP1P50238 77 aa3.58□□□□□ -1.84
UBE3D-202ENST00000369746 FXYD7P58549 80 aa3.58□□□□□ -1.84
UBE3D-202ENST00000369746 NANOS2P60321 138 aaKnown RBP3.58□□□□□ -1.84
UBE3D-202ENST00000369746 SPINK9Q5DT21 86 aa3.58□□□□□ -1.84
UBE3D-202ENST00000369746 MAPK1IP1LQ8NDC0 245 aa3.58□□□□□ -1.84
UBE3D-202ENST00000369746 ZNF407Q9C0G0 2248 aa3.58□□□□□ -1.84
UBE3D-202ENST00000369746 M0R3E3 92 aa3.58□□□□□ -1.84
UBE3D-202ENST00000369746 TFF1P04155 84 aa3.58□□□□□ -1.84
UBE3D-202ENST00000369746 ADM2Q7Z4H4 148 aa3.58□□□□□ -1.84
UBE3D-202ENST00000369746 ZNF469Q96JG9 3925 aaPredicted RBP3.58□□□□□ -1.84
UBE3D-202ENST00000369746 CRYBG3Q68DQ2 2970 aa3.58□□□□□ -1.84
UBE3D-202ENST00000369746 IGLV3-9A0A075B6K5 115 aa3.57□□□□□ -1.84
UBE3D-202ENST00000369746 IGHV1-69P01742 117 aa3.57□□□□□ -1.84
UBE3D-202ENST00000369746 BAALC-AS2P0C853 105 aa3.57□□□□□ -1.84
UBE3D-202ENST00000369746 MIFP14174 115 aa3.57□□□□□ -1.84
UBE3D-202ENST00000369746 IGHV1-2P23083 117 aa3.57□□□□□ -1.84
UBE3D-202ENST00000369746 MIAQ16674 131 aa3.57□□□□□ -1.84
UBE3D-202ENST00000369746 ALMS1Q8TCU4 4167 aa3.57□□□□□ -1.84
UBE3D-202ENST00000369746 IGKV1D-17A0A075B6S4 117 aa3.57□□□□□ -1.84
UBE3D-202ENST00000369746 IGKV1D-37A0A075B6S9 117 aa3.57□□□□□ -1.84
UBE3D-202ENST00000369746 ERHP84090 104 aaKnown RBP3.57□□□□□ -1.84
UBE3D-202ENST00000369746 DEFB108BQ8NET1 73 aa3.57□□□□□ -1.84
UBE3D-202ENST00000369746 LINC01006Q8NI28 216 aa3.57□□□□□ -1.84
UBE3D-202ENST00000369746 A6NN06 94 aa3.57□□□□□ -1.84
UBE3D-202ENST00000369746 E7EUB6 86 aa3.57□□□□□ -1.84
UBE3D-202ENST00000369746 F8WEM9 126 aa3.57□□□□□ -1.84
UBE3D-202ENST00000369746 K7EIL1 84 aa3.57□□□□□ -1.84
UBE3D-202ENST00000369746 CD28P10747 220 aa3.57□□□□□ -1.84
UBE3D-202ENST00000369746 UBE2AP49459 152 aa3.57□□□□□ -1.84
UBE3D-202ENST00000369746 SCXQ7RTU7 201 aa3.57□□□□□ -1.84
UBE3D-202ENST00000369746 KLHL30-AS1Q8NEE0 82 aa3.57□□□□□ -1.84
UBE3D-202ENST00000369746 PRAC1Q96KF2 57 aa3.57□□□□□ -1.84
UBE3D-202ENST00000369746 LITAFQ99732 161 aa3.57□□□□□ -1.84
UBE3D-202ENST00000369746 C22orf24Q9Y442 160 aa3.57□□□□□ -1.84
UBE3D-202ENST00000369746 TSHBP01222 138 aa3.56□□□□□ -1.84
UBE3D-202ENST00000369746 NNATQ16517 81 aa3.56□□□□□ -1.84
UBE3D-202ENST00000369746 ADAMTSL4-AS1Q5T5F5 129 aa3.56□□□□□ -1.84
UBE3D-202ENST00000369746 C2orf66Q6UXQ4 117 aa3.56□□□□□ -1.84
UBE3D-202ENST00000369746 ATP11AUNQ6ZP68 121 aa3.56□□□□□ -1.84
UBE3D-202ENST00000369746 FGF23Q9GZV9 251 aaPredicted RBP3.56□□□□□ -1.84
UBE3D-202ENST00000369746 IGHV3OR16-12A0A075B7B8 117 aa3.56□□□□□ -1.84
UBE3D-202ENST00000369746 TSPEAR-AS2P59090 65 aa3.56□□□□□ -1.84
UBE3D-202ENST00000369746 C14orf178Q8N769 122 aaPredicted RBP3.56□□□□□ -1.84
UBE3D-202ENST00000369746 IGHV4-28A0A0C4DH34 117 aa3.55□□□□□ -1.84
UBE3D-202ENST00000369746 FAM229BQ4G0N7 80 aa3.55□□□□□ -1.84
UBE3D-202ENST00000369746 IGHV1OR15-1A0A075B7D0 117 aa3.55□□□□□ -1.84
UBE3D-202ENST00000369746 A0A087X002 238 aa3.55□□□□□ -1.84
UBE3D-202ENST00000369746 SOCS3O14543 225 aa3.55□□□□□ -1.84
UBE3D-202ENST00000369746 RPL28P46779 137 aaKnown RBP3.55□□□□□ -1.84
UBE3D-202ENST00000369746 CXCL6P80162 114 aa3.55□□□□□ -1.84
UBE3D-202ENST00000369746 NDUFA4L2Q9NRX3 87 aa3.55□□□□□ -1.84
UBE3D-202ENST00000369746 LINC00846Q9NV44 126 aa3.55□□□□□ -1.84
UBE3D-202ENST00000369746 CMYA5Q8N3K9 4069 aa3.55□□□□□ -1.84
UBE3D-202ENST00000369746 MED12Q93074 2177 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms