RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 SPANXDQ9BXN6 97 aa9.33□□□□□ -0.92
SQSTM1-201ENST00000360718 CDIP1Q9H305 208 aa9.33□□□□□ -0.92
SQSTM1-201ENST00000360718 SPANXCQ9NY87 97 aa9.33□□□□□ -0.92
SQSTM1-201ENST00000360718 NDUFA12Q9UI09 145 aa9.33□□□□□ -0.92
SQSTM1-201ENST00000360718 SLC25A20O43772 301 aa9.32□□□□□ -0.92
SQSTM1-201ENST00000360718 PRSS2P07478 247 aa9.32□□□□□ -0.92
SQSTM1-201ENST00000360718 ATXN8Q156A1 80 aa9.32□□□□□ -0.92
SQSTM1-201ENST00000360718 CEMP1Q6PRD7 247 aaPredicted RBP9.32□□□□□ -0.92
SQSTM1-201ENST00000360718 VSIG2Q96IQ7 327 aa9.32□□□□□ -0.92
SQSTM1-201ENST00000360718 GEMIN7Q9H840 131 aaKnown RBP9.32□□□□□ -0.92
SQSTM1-201ENST00000360718 TENM3Q9P273 2699 aa9.31□□□□□ -0.92
SQSTM1-201ENST00000360718 LYRM9A8MSI8 78 aa9.31□□□□□ -0.92
SQSTM1-201ENST00000360718 TMEM262E9PQX1 116 aa9.31□□□□□ -0.92
SQSTM1-201ENST00000360718 H7C2G1 150 aa9.31□□□□□ -0.92
SQSTM1-201ENST00000360718 CARD19Q96LW7 228 aa9.31□□□□□ -0.92
SQSTM1-201ENST00000360718 IGHV4-28A0A0C4DH34 117 aa9.31□□□□□ -0.92
SQSTM1-201ENST00000360718 TRBV30A0A0K0K1B3 111 aa9.31□□□□□ -0.92
SQSTM1-201ENST00000360718 SPINK8P0C7L1 97 aa9.31□□□□□ -0.92
SQSTM1-201ENST00000360718 DEFB130BP0DP73 79 aa9.31□□□□□ -0.92
SQSTM1-201ENST00000360718 DEFB130AP0DP74 79 aa9.31□□□□□ -0.92
SQSTM1-201ENST00000360718 Q6ZSN1 163 aa9.31□□□□□ -0.92
SQSTM1-201ENST00000360718 TRAV8-3A0A0A6YYJ7 113 aa9.3□□□□□ -0.92
SQSTM1-201ENST00000360718 C9JAW5 83 aa9.3□□□□□ -0.92
SQSTM1-201ENST00000360718 DGAT2L7PQ6IED9 249 aa9.3□□□□□ -0.92
SQSTM1-201ENST00000360718 ANKRD29Q8N6D5 301 aa9.3□□□□□ -0.92
SQSTM1-201ENST00000360718 LITAFQ99732 161 aa9.3□□□□□ -0.92
SQSTM1-201ENST00000360718 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.3□□□□□ -0.92
SQSTM1-201ENST00000360718 TRGV4A0A0C4DH28 118 aa9.3□□□□□ -0.92
SQSTM1-201ENST00000360718 IGKV2-29A2NJV5 120 aaPredicted RBP9.3□□□□□ -0.92
SQSTM1-201ENST00000360718 DEFB4AO15263 64 aa9.3□□□□□ -0.92
SQSTM1-201ENST00000360718 EIF4EBP3O60516 100 aaPredicted RBP9.3□□□□□ -0.92
SQSTM1-201ENST00000360718 TIRAPP58753 221 aa9.3□□□□□ -0.92
SQSTM1-201ENST00000360718 KPRPQ5T749 579 aaPredicted RBP9.3□□□□□ -0.92
SQSTM1-201ENST00000360718 Q6ZUT4 128 aa9.3□□□□□ -0.92
SQSTM1-201ENST00000360718 TIMM17BO60830 172 aa9.29□□□□□ -0.92
SQSTM1-201ENST00000360718 MIAQ16674 131 aa9.29□□□□□ -0.92
SQSTM1-201ENST00000360718 RNASE13Q5GAN3 156 aaKnown RBP9.29□□□□□ -0.92
SQSTM1-201ENST00000360718 FAM222AQ5U5X8 452 aa9.29□□□□□ -0.92
SQSTM1-201ENST00000360718 Q8NAQ8 132 aa9.29□□□□□ -0.92
SQSTM1-201ENST00000360718 RETNQ9HD89 108 aa9.29□□□□□ -0.92
SQSTM1-201ENST00000360718 K7EIL1 84 aa9.29□□□□□ -0.92
SQSTM1-201ENST00000360718 K7EQD1 137 aa9.29□□□□□ -0.92
SQSTM1-201ENST00000360718 COX6CP09669 75 aa9.29□□□□□ -0.92
SQSTM1-201ENST00000360718 IFITM1P13164 125 aa9.29□□□□□ -0.92
SQSTM1-201ENST00000360718 ZFAND6Q6FIF0 208 aa9.29□□□□□ -0.92
SQSTM1-201ENST00000360718 LINC00612Q8N6U2 182 aa9.29□□□□□ -0.92
SQSTM1-201ENST00000360718 TRBV10-1A0A0K0K1A3 114 aa9.28□□□□□ -0.92
SQSTM1-201ENST00000360718 Q9UF83 564 aa9.28□□□□□ -0.92
SQSTM1-201ENST00000360718 LINC01620Q4KN68 170 aa9.28□□□□□ -0.92
SQSTM1-201ENST00000360718 IGHV3-38A0A0C4DH36 116 aa9.27□□□□□ -0.93
SQSTM1-201ENST00000360718 SPART-AS1P0CW21 52 aa9.27□□□□□ -0.93
SQSTM1-201ENST00000360718 RPL36AP83881 106 aaKnown RBP9.27□□□□□ -0.93
SQSTM1-201ENST00000360718 CIRBPQ14011 172 aaKnown RBP9.27□□□□□ -0.93
SQSTM1-201ENST00000360718 DEFB121Q5J5C9 76 aa9.27□□□□□ -0.93
SQSTM1-201ENST00000360718 RPL36ALQ969Q0 106 aaKnown RBP9.27□□□□□ -0.93
SQSTM1-201ENST00000360718 LINC01600Q96MT4 127 aa9.27□□□□□ -0.93
SQSTM1-201ENST00000360718 DAD1P61803 113 aa9.26□□□□□ -0.93
SQSTM1-201ENST00000360718 ADAMTSL4-AS1Q5T5F5 129 aa9.26□□□□□ -0.93
SQSTM1-201ENST00000360718 IGLV5-45A0A087WSX0 123 aa9.26□□□□□ -0.93
SQSTM1-201ENST00000360718 TRAV26-1A0A087WT03 109 aa9.26□□□□□ -0.93
SQSTM1-201ENST00000360718 TRBV6-4A0A1B0GX49 114 aa9.26□□□□□ -0.93
SQSTM1-201ENST00000360718 XGP55808 180 aa9.26□□□□□ -0.93
SQSTM1-201ENST00000360718 TRBV10-2A0A0K0K1G8 114 aa9.25□□□□□ -0.93
SQSTM1-201ENST00000360718 MT-ATP8P03928 68 aa9.25□□□□□ -0.93
SQSTM1-201ENST00000360718 HERVK_113P63121 156 aa9.25□□□□□ -0.93
SQSTM1-201ENST00000360718 ICOSQ9Y6W8 199 aa9.25□□□□□ -0.93
SQSTM1-201ENST00000360718 NDUFA1O15239 70 aa9.25□□□□□ -0.93
SQSTM1-201ENST00000360718 TRIAP1O43715 76 aa9.25□□□□□ -0.93
SQSTM1-201ENST00000360718 FHL2Q14192 279 aa9.25□□□□□ -0.93
SQSTM1-201ENST00000360718 CDKN2A-AS1Q9UH64 79 aa9.25□□□□□ -0.93
SQSTM1-201ENST00000360718 COPS9Q8WXC6 57 aa9.24□□□□□ -0.93
SQSTM1-201ENST00000360718 TMEM101Q96IK0 257 aa9.24□□□□□ -0.93
SQSTM1-201ENST00000360718 CELA1Q9UNI1 258 aa9.24□□□□□ -0.93
SQSTM1-201ENST00000360718 DAZ4Q86SG3 579 aaKnown RBP9.23□□□□□ -0.93
SQSTM1-201ENST00000360718 DAZ3Q9NR90 486 aaKnown RBP9.23□□□□□ -0.93
SQSTM1-201ENST00000360718 CSDC2Q9Y534 153 aaKnown RBP9.23□□□□□ -0.93
SQSTM1-201ENST00000360718 GAGE12JA6NER3 117 aa9.22□□□□□ -0.93
SQSTM1-201ENST00000360718 ATP5G1P05496 136 aa9.22□□□□□ -0.93
SQSTM1-201ENST00000360718 RPL13AP40429 203 aaKnown RBP9.22□□□□□ -0.93
SQSTM1-201ENST00000360718 GAGE4Q13068 117 aa9.22□□□□□ -0.93
SQSTM1-201ENST00000360718 GAGE5Q13069 117 aa9.22□□□□□ -0.93
SQSTM1-201ENST00000360718 FAM19A3Q7Z5A8 133 aa9.22□□□□□ -0.93
SQSTM1-201ENST00000360718 NTN5Q8WTR8 489 aaPredicted RBP9.22□□□□□ -0.93
SQSTM1-201ENST00000360718 PRO0255Q9UI72 69 aa9.22□□□□□ -0.93
SQSTM1-201ENST00000360718 KRTAP21-3Q3LHN1 58 aa9.21□□□□□ -0.93
SQSTM1-201ENST00000360718 C11orf68Q9H3H3 251 aaKnown RBP9.21□□□□□ -0.93
SQSTM1-201ENST00000360718 H3BT86 120 aa9.21□□□□□ -0.94
SQSTM1-201ENST00000360718 NPC2P61916 151 aa9.21□□□□□ -0.94
SQSTM1-201ENST00000360718 MRAPQ8TCY5 172 aa9.21□□□□□ -0.94
SQSTM1-201ENST00000360718 IGLV5-39A0A0G2JS06 123 aa9.2□□□□□ -0.94
SQSTM1-201ENST00000360718 LINC00242Q5T6M2 205 aa9.2□□□□□ -0.94
SQSTM1-201ENST00000360718 C2orf82Q6UX34 121 aa9.2□□□□□ -0.94
SQSTM1-201ENST00000360718 HUWE1Q7Z6Z7 4374 aaKnown RBP9.2□□□□□ -0.94
SQSTM1-201ENST00000360718 COL7A1Q02388 2944 aa9.2□□□□□ -0.94
SQSTM1-201ENST00000360718 COX6A2Q02221 97 aa9.19□□□□□ -0.94
SQSTM1-201ENST00000360718 UBE2WQ96B02 151 aa9.19□□□□□ -0.94
SQSTM1-201ENST00000360718 Q9H8V8 135 aa9.19□□□□□ -0.94
SQSTM1-201ENST00000360718 LOC100131303A0A0U1RQF7 123 aa9.19□□□□□ -0.94
SQSTM1-201ENST00000360718 PAX4O43316 350 aa9.19□□□□□ -0.94
SQSTM1-201ENST00000360718 TM2D3Q9BRN9 247 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms