RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 ZNF462Q96JM2 2506 aa14.33□□□□□ -0.12
CCDC88B-202ENST00000356786 A0A087WVE0 104 aa14.33□□□□□ -0.12
CCDC88B-202ENST00000356786 AGRNO00468 2067 aa14.33□□□□□ -0.12
CCDC88B-202ENST00000356786 SMIM9A6NGZ8 99 aa14.32□□□□□ -0.12
CCDC88B-202ENST00000356786 IGKV4-1P06312 121 aa14.32□□□□□ -0.12
CCDC88B-202ENST00000356786 A0A096LNI7 61 aa14.31□□□□□ -0.12
CCDC88B-202ENST00000356786 FN1P02751 2386 aaKnown RBP14.31□□□□□ -0.12
CCDC88B-202ENST00000356786 IGKV2-24A0A0C4DH68 120 aa14.3□□□□□ -0.12
CCDC88B-202ENST00000356786 PSMG3-AS1Q96PY0 264 aa14.3□□□□□ -0.12
CCDC88B-202ENST00000356786 PRR4Q16378 134 aa14.3□□□□□ -0.12
CCDC88B-202ENST00000356786 LINC00242Q5T6M2 205 aa14.29□□□□□ -0.12
CCDC88B-202ENST00000356786 SMIM26A0A096LP01 95 aa14.29□□□□□ -0.12
CCDC88B-202ENST00000356786 USP9YO00507 2555 aaPredicted RBP14.29□□□□□ -0.12
CCDC88B-202ENST00000356786 PKD1L2Q7Z442 2459 aa14.28□□□□□ -0.12
CCDC88B-202ENST00000356786 PRORYQ9H606 182 aa14.28□□□□□ -0.12
CCDC88B-202ENST00000356786 DNAJC9-AS1A6NH13 148 aa14.27□□□□□ -0.12
CCDC88B-202ENST00000356786 CDIP1Q9H305 208 aa14.27□□□□□ -0.12
CCDC88B-202ENST00000356786 ADAMTSL4-AS1Q5T5F5 129 aa14.27□□□□□ -0.12
CCDC88B-202ENST00000356786 ZNF580Q9UK33 172 aa14.27□□□□□ -0.12
CCDC88B-202ENST00000356786 LOC100131303A0A0U1RQF7 123 aa14.27□□□□□ -0.13
CCDC88B-202ENST00000356786 WFDC10BQ8IUB3 73 aa14.27□□□□□ -0.13
CCDC88B-202ENST00000356786 IGLV2-18A0A075B6J9 118 aa14.26□□□□□ -0.13
CCDC88B-202ENST00000356786 LINC00959A0A1B0GUT2 108 aa14.26□□□□□ -0.13
CCDC88B-202ENST00000356786 KLK5Q9Y337 293 aaPredicted RBP14.26□□□□□ -0.13
CCDC88B-202ENST00000356786 ABCA12Q86UK0 2595 aa14.26□□□□□ -0.13
CCDC88B-202ENST00000356786 LYRM9A8MSI8 78 aa14.26□□□□□ -0.13
CCDC88B-202ENST00000356786 CD164L2Q6UWJ8 174 aa14.26□□□□□ -0.13
CCDC88B-202ENST00000356786 Q6YL49 198 aa14.26□□□□□ -0.13
CCDC88B-202ENST00000356786 COX8CQ7Z4L0 72 aa14.26□□□□□ -0.13
CCDC88B-202ENST00000356786 CDC42SE2Q9NRR3 84 aa14.26□□□□□ -0.13
CCDC88B-202ENST00000356786 JMJD1CQ15652 2540 aa14.26□□□□□ -0.13
CCDC88B-202ENST00000356786 PRRC2AP48634 2157 aaKnown RBP14.25□□□□□ -0.13
CCDC88B-202ENST00000356786 C19orf84I3L1E1 186 aa14.25□□□□□ -0.13
CCDC88B-202ENST00000356786 ANKRD11Q6UB99 2663 aaPredicted RBP14.25□□□□□ -0.13
CCDC88B-202ENST00000356786 FAM19A5Q7Z5A7 132 aaPredicted RBP14.25□□□□□ -0.13
CCDC88B-202ENST00000356786 NTM-AS1Q6ZSK4 140 aa14.24□□□□□ -0.13
CCDC88B-202ENST00000356786 C1orf195Q5TG92 126 aa14.24□□□□□ -0.13
CCDC88B-202ENST00000356786 C11orf71Q6IPW1 123 aa14.24□□□□□ -0.13
CCDC88B-202ENST00000356786 BBC3Q96PG8 261 aaPredicted RBP14.23□□□□□ -0.13
CCDC88B-202ENST00000356786 SMIM1B2RUZ4 78 aa14.23□□□□□ -0.13
CCDC88B-202ENST00000356786 MIFP14174 115 aa14.23□□□□□ -0.13
CCDC88B-202ENST00000356786 RPL28P46779 137 aaKnown RBP14.22□□□□□ -0.13
CCDC88B-202ENST00000356786 TRAV7A0A075B6U4 112 aa14.22□□□□□ -0.13
CCDC88B-202ENST00000356786 IGKV2-28A0A075B6P5 120 aa14.2□□□□□ -0.14
CCDC88B-202ENST00000356786 IGKV2D-28P01615 120 aa14.2□□□□□ -0.14
CCDC88B-202ENST00000356786 WFDC13Q8IUB5 93 aa14.2□□□□□ -0.14
CCDC88B-202ENST00000356786 FAM19A1Q7Z5A9 133 aa14.2□□□□□ -0.14
CCDC88B-202ENST00000356786 HTTP42858 3142 aa14.2□□□□□ -0.14
CCDC88B-202ENST00000356786 B9D2Q9BPU9 175 aa14.19□□□□□ -0.14
CCDC88B-202ENST00000356786 SERP1Q9Y6X1 66 aa14.19□□□□□ -0.14
CCDC88B-202ENST00000356786 SYCNQ0VAF6 134 aa14.19□□□□□ -0.14
CCDC88B-202ENST00000356786 IGLV1-40P01703 118 aa14.18□□□□□ -0.14
CCDC88B-202ENST00000356786 LOC107984640A0A0U1RRK4 108 aa14.18□□□□□ -0.14
CCDC88B-202ENST00000356786 SOSTDC1Q6X4U4 206 aa14.17□□□□□ -0.14
CCDC88B-202ENST00000356786 A0A087WYN8 130 aa14.17□□□□□ -0.14
CCDC88B-202ENST00000356786 A6NED7 52 aa14.17□□□□□ -0.14
CCDC88B-202ENST00000356786 ZNF73O43830 326 aaPredicted RBP14.17□□□□□ -0.14
CCDC88B-202ENST00000356786 COX6A2Q02221 97 aa14.16□□□□□ -0.14
CCDC88B-202ENST00000356786 Q8IZM0 81 aa14.16□□□□□ -0.14
CCDC88B-202ENST00000356786 LINC00482Q8N8I6 264 aa14.16□□□□□ -0.14
CCDC88B-202ENST00000356786 AMELXQ99217 191 aa14.16□□□□□ -0.14
CCDC88B-202ENST00000356786 CELA1Q9UNI1 258 aa14.16□□□□□ -0.14
CCDC88B-202ENST00000356786 SPTBN4Q9H254 2564 aa14.15□□□□□ -0.14
CCDC88B-202ENST00000356786 ZFYVE26Q68DK2 2539 aa14.15□□□□□ -0.14
CCDC88B-202ENST00000356786 EDN2P20800 178 aa14.15□□□□□ -0.14
CCDC88B-202ENST00000356786 A0A0J9YWU9 116 aa14.15□□□□□ -0.14
CCDC88B-202ENST00000356786 M0R378 163 aa14.15□□□□□ -0.14
CCDC88B-202ENST00000356786 CHCHD7Q9BUK0 85 aa14.15□□□□□ -0.14
CCDC88B-202ENST00000356786 WFDC10AQ9H1F0 79 aa14.15□□□□□ -0.14
CCDC88B-202ENST00000356786 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP14.15□□□□□ -0.14
CCDC88B-202ENST00000356786 SEC61GP60059 68 aa14.15□□□□□ -0.14
CCDC88B-202ENST00000356786 CHD7Q9P2D1 2997 aa14.14□□□□□ -0.15
CCDC88B-202ENST00000356786 Q8N814 137 aa14.14□□□□□ -0.15
CCDC88B-202ENST00000356786 COL5A1P20908 1838 aaPredicted RBP14.14□□□□□ -0.15
CCDC88B-202ENST00000356786 IGHV4-31P0DP07 118 aa14.14□□□□□ -0.15
CCDC88B-202ENST00000356786 COX17Q14061 63 aa14.14□□□□□ -0.15
CCDC88B-202ENST00000356786 C11orf45Q8TAV5 145 aa14.13□□□□□ -0.15
CCDC88B-202ENST00000356786 LRCOL1A6NCL2 159 aa14.13□□□□□ -0.15
CCDC88B-202ENST00000356786 C18orf65Q6ZTR6 163 aa14.13□□□□□ -0.15
CCDC88B-202ENST00000356786 PPDPFQ9H3Y8 114 aa14.12□□□□□ -0.15
CCDC88B-202ENST00000356786 MRGPRG-AS1Q2M3A8 158 aa14.12□□□□□ -0.15
CCDC88B-202ENST00000356786 FAM30AQ9NZY2 134 aa14.12□□□□□ -0.15
CCDC88B-202ENST00000356786 ZNF702PQ9H963 129 aa14.11□□□□□ -0.15
CCDC88B-202ENST00000356786 CHD8Q9HCK8 2581 aa14.11□□□□□ -0.15
CCDC88B-202ENST00000356786 SMCPP49901 116 aaPredicted RBP14.11□□□□□ -0.15
CCDC88B-202ENST00000356786 PRR3P79522 188 aaKnown RBP14.11□□□□□ -0.15
CCDC88B-202ENST00000356786 Q8N3U1 123 aa14.1□□□□□ -0.15
CCDC88B-202ENST00000356786 CYSRT1A8MQ03 144 aa14.1□□□□□ -0.15
CCDC88B-202ENST00000356786 COL4A2P08572 1712 aa14.09□□□□□ -0.15
CCDC88B-202ENST00000356786 LINC00846Q9NV44 126 aa14.09□□□□□ -0.15
CCDC88B-202ENST00000356786 DHRS4-AS1Q9P1J3 65 aa14.08□□□□□ -0.15
CCDC88B-202ENST00000356786 DEFB131BA0A096LNP1 70 aa14.08□□□□□ -0.16
CCDC88B-202ENST00000356786 CDSNQ15517 529 aa14.08□□□□□ -0.16
CCDC88B-202ENST00000356786 UNQ6190/PRO20217Q6UXQ8 127 aa14.08□□□□□ -0.16
CCDC88B-202ENST00000356786 CSDC2Q9Y534 153 aaKnown RBP14.08□□□□□ -0.16
CCDC88B-202ENST00000356786 TRBV7-7A0A0K0K1E9 115 aa14.08□□□□□ -0.16
CCDC88B-202ENST00000356786 A0A087WZ39 114 aa14.08□□□□□ -0.16
CCDC88B-202ENST00000356786 SHISA2Q6UWI4 295 aa14.08□□□□□ -0.16
CCDC88B-202ENST00000356786 C4orf48Q5BLP8 95 aa14.07□□□□□ -0.16
CCDC88B-202ENST00000356786 C9orf116Q5BN46 136 aaPredicted RBP14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 103.6 ms