RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 RPL37AP8A6NKH3 93 aa13.19□□□□□ -0.3
SMAD4-201ENST00000342988 C8orf87E5RJ46 101 aa13.19□□□□□ -0.3
SMAD4-201ENST00000342988 RITA1Q96K30 269 aa13.18□□□□□ -0.3
SMAD4-201ENST00000342988 IGLV3-1P01715 115 aa13.18□□□□□ -0.3
SMAD4-201ENST00000342988 C1orf137Q5JT78 98 aa13.18□□□□□ -0.3
SMAD4-201ENST00000342988 DNAJC9-AS1A6NH13 148 aa13.17□□□□□ -0.3
SMAD4-201ENST00000342988 LELP1Q5T871 98 aa13.17□□□□□ -0.3
SMAD4-201ENST00000342988 ZNF22P17026 224 aaPredicted RBP13.16□□□□□ -0.3
SMAD4-201ENST00000342988 BEAN1Q3B7T3 259 aa13.16□□□□□ -0.3
SMAD4-201ENST00000342988 ZNF462Q96JM2 2506 aa13.16□□□□□ -0.3
SMAD4-201ENST00000342988 Q6ZSR3 168 aa13.16□□□□□ -0.3
SMAD4-201ENST00000342988 PRLHP81277 87 aa13.16□□□□□ -0.3
SMAD4-201ENST00000342988 DAZAP2Q15038 168 aaPredicted RBP13.16□□□□□ -0.3
SMAD4-201ENST00000342988 NTM-AS1Q6ZSK4 140 aa13.16□□□□□ -0.3
SMAD4-201ENST00000342988 POM121L12Q8N7R1 296 aa13.16□□□□□ -0.3
SMAD4-201ENST00000342988 COL27A1Q8IZC6 1860 aaPredicted RBP13.16□□□□□ -0.3
SMAD4-201ENST00000342988 NUPR2A6NF83 97 aa13.15□□□□□ -0.3
SMAD4-201ENST00000342988 P0C879 139 aa13.15□□□□□ -0.3
SMAD4-201ENST00000342988 PRO0628Q9UI54 55 aa13.15□□□□□ -0.3
SMAD4-201ENST00000342988 LINC00526Q96FQ7 95 aa13.14□□□□□ -0.31
SMAD4-201ENST00000342988 ACYP2P14621 99 aa13.14□□□□□ -0.31
SMAD4-201ENST00000342988 ZFP36P26651 326 aaKnown RBP13.13□□□□□ -0.31
SMAD4-201ENST00000342988 FAM215AQ9Y5M1 114 aa13.13□□□□□ -0.31
SMAD4-201ENST00000342988 Q8IZM0 81 aa13.13□□□□□ -0.31
SMAD4-201ENST00000342988 PATE2Q6UY27 113 aa13.12□□□□□ -0.31
SMAD4-201ENST00000342988 TLN1Q9Y490 2541 aaKnown RBP13.12□□□□□ -0.31
SMAD4-201ENST00000342988 M0QY20 66 aa13.12□□□□□ -0.31
SMAD4-201ENST00000342988 KPRPQ5T749 579 aaPredicted RBP13.12□□□□□ -0.31
SMAD4-201ENST00000342988 Q8N814 137 aa13.11□□□□□ -0.31
SMAD4-201ENST00000342988 UNQ9165/PRO28630Q6UXU0 137 aa13.11□□□□□ -0.31
SMAD4-201ENST00000342988 LINC00337Q8N6G1 96 aa13.11□□□□□ -0.31
SMAD4-201ENST00000342988 HCG22E2RYF7 251 aa13.1□□□□□ -0.31
SMAD4-201ENST00000342988 TP53AIP1Q9HCN2 124 aa13.1□□□□□ -0.31
SMAD4-201ENST00000342988 ZNF702PQ9H963 129 aa13.1□□□□□ -0.31
SMAD4-201ENST00000342988 ZNF503-AS2A6NEH8 195 aa13.09□□□□□ -0.31
SMAD4-201ENST00000342988 U3KQK5 164 aa13.09□□□□□ -0.31
SMAD4-201ENST00000342988 F8WDY8 70 aa13.09□□□□□ -0.31
SMAD4-201ENST00000342988 TP53TG3Q9ULZ0 132 aa13.09□□□□□ -0.31
SMAD4-201ENST00000342988 C11orf53Q8IXP5 236 aa13.09□□□□□ -0.31
SMAD4-201ENST00000342988 PRORYQ9H606 182 aa13.08□□□□□ -0.31
SMAD4-201ENST00000342988 LY6G6CO95867 125 aa13.08□□□□□ -0.32
SMAD4-201ENST00000342988 SHISA2Q6UWI4 295 aa13.08□□□□□ -0.32
SMAD4-201ENST00000342988 PCOTHQ58A44 107 aa13.07□□□□□ -0.32
SMAD4-201ENST00000342988 Q8N3U1 123 aa13.06□□□□□ -0.32
SMAD4-201ENST00000342988 THSD7BQ9C0I4 1608 aa13.06□□□□□ -0.32
SMAD4-201ENST00000342988 SBSPONQ8IVN8 264 aa13.06□□□□□ -0.32
SMAD4-201ENST00000342988 EIF4EBP1Q13541 118 aaPredicted RBP13.06□□□□□ -0.32
SMAD4-201ENST00000342988 DEFB114Q30KQ6 69 aa13.06□□□□□ -0.32
SMAD4-201ENST00000342988 ODF3BA8MYP8 253 aa13.05□□□□□ -0.32
SMAD4-201ENST00000342988 PROK2Q9HC23 129 aa13.05□□□□□ -0.32
SMAD4-201ENST00000342988 IGLV2-18A0A075B6J9 118 aa13.05□□□□□ -0.32
SMAD4-201ENST00000342988 ANKRD17O75179 2603 aaKnown RBP13.04□□□□□ -0.32
SMAD4-201ENST00000342988 IGLV5-52A0A0A0MRZ9 124 aa13.04□□□□□ -0.32
SMAD4-201ENST00000342988 RETNLBQ9BQ08 111 aa13.04□□□□□ -0.32
SMAD4-201ENST00000342988 RBX1P62877 108 aa13.03□□□□□ -0.32
SMAD4-201ENST00000342988 RNASE3P12724 160 aaKnown RBP13.03□□□□□ -0.32
SMAD4-201ENST00000342988 Q6ZTC4 211 aa13.03□□□□□ -0.32
SMAD4-201ENST00000342988 Q9BRP9 147 aa13.02□□□□□ -0.32
SMAD4-201ENST00000342988 LINC00575Q6W349 94 aa13.02□□□□□ -0.32
SMAD4-201ENST00000342988 K7EQG2 157 aa13.02□□□□□ -0.33
SMAD4-201ENST00000342988 M0R2N4 97 aa13.02□□□□□ -0.33
SMAD4-201ENST00000342988 Q8N6K4 173 aa13.02□□□□□ -0.33
SMAD4-201ENST00000342988 C1orf64Q8NEQ6 169 aa13.01□□□□□ -0.33
SMAD4-201ENST00000342988 ZFHX2Q9C0A1 2572 aaPredicted RBP13.01□□□□□ -0.33
SMAD4-201ENST00000342988 RSPO1Q2MKA7 263 aaPredicted RBP13.01□□□□□ -0.33
SMAD4-201ENST00000342988 CR1P17927 2039 aa13.01□□□□□ -0.33
SMAD4-201ENST00000342988 MSMPQ1L6U9 139 aa13□□□□□ -0.33
SMAD4-201ENST00000342988 XGP55808 180 aa13□□□□□ -0.33
SMAD4-201ENST00000342988 LINC00959A0A1B0GUT2 108 aa13□□□□□ -0.33
SMAD4-201ENST00000342988 TNFRSF13BO14836 293 aaPredicted RBP13□□□□□ -0.33
SMAD4-201ENST00000342988 IGF2-ASQ6U949 168 aa13□□□□□ -0.33
SMAD4-201ENST00000342988 MRGPRG-AS1Q2M3A8 158 aa13□□□□□ -0.33
SMAD4-201ENST00000342988 IGKV2D-30A0A075B6S6 120 aa12.99□□□□□ -0.33
SMAD4-201ENST00000342988 IGKV2-30P06310 120 aa12.99□□□□□ -0.33
SMAD4-201ENST00000342988 KRTAP27-1Q3LI81 207 aa12.99□□□□□ -0.33
SMAD4-201ENST00000342988 DEFB1P60022 68 aa12.99□□□□□ -0.33
SMAD4-201ENST00000342988 C2orf48Q96LS8 159 aa12.98□□□□□ -0.33
SMAD4-201ENST00000342988 MAPKAPK5-AS1Q8N8E1 139 aa12.97□□□□□ -0.33
SMAD4-201ENST00000342988 EGFEM1PQ0D2K5 195 aa12.97□□□□□ -0.33
SMAD4-201ENST00000342988 IGLV1-47P01700 117 aa12.97□□□□□ -0.33
SMAD4-201ENST00000342988 ATP11AUNQ6ZP68 121 aa12.97□□□□□ -0.33
SMAD4-201ENST00000342988 CLUHP3Q96NS8 147 aa12.97□□□□□ -0.33
SMAD4-201ENST00000342988 TSHBP01222 138 aa12.96□□□□□ -0.33
SMAD4-201ENST00000342988 NRGNQ92686 78 aa12.96□□□□□ -0.33
SMAD4-201ENST00000342988 GRNP28799 593 aaKnown RBP12.96□□□□□ -0.34
SMAD4-201ENST00000342988 ZNF80P51504 273 aaPredicted RBP12.96□□□□□ -0.34
SMAD4-201ENST00000342988 PKD1L2Q7Z442 2459 aa12.96□□□□□ -0.34
SMAD4-201ENST00000342988 C6orf48Q9UBA6 75 aa12.96□□□□□ -0.34
SMAD4-201ENST00000342988 BBC3Q96PG8 261 aaPredicted RBP12.95□□□□□ -0.34
SMAD4-201ENST00000342988 Q6YL49 198 aa12.95□□□□□ -0.34
SMAD4-201ENST00000342988 CYSRT1A8MQ03 144 aa12.95□□□□□ -0.34
SMAD4-201ENST00000342988 COL4A5P29400 1685 aa12.95□□□□□ -0.34
SMAD4-201ENST00000342988 USP9XQ93008 2570 aaPredicted RBP12.94□□□□□ -0.34
SMAD4-201ENST00000342988 ABCA12Q86UK0 2595 aa12.93□□□□□ -0.34
SMAD4-201ENST00000342988 CHCHD7Q9BUK0 85 aa12.93□□□□□ -0.34
SMAD4-201ENST00000342988 Q8N7P7 452 aa12.92□□□□□ -0.34
SMAD4-201ENST00000342988 LINC01556Q5JQF7 62 aa12.92□□□□□ -0.34
SMAD4-201ENST00000342988 SPRNQ5BIV9 151 aa12.92□□□□□ -0.34
SMAD4-201ENST00000342988 E7EUB6 86 aa12.91□□□□□ -0.34
SMAD4-201ENST00000342988 MBD6Q96DN6 1003 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 111.4 ms