RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 TRBV30A0A0K0K1B3 111 aa9.25□□□□□ -0.93
SDC3-201ENST00000336798 C9orf116Q5BN46 136 aaPredicted RBP9.25□□□□□ -0.93
SDC3-201ENST00000336798 IGLV2-11P01706 119 aa9.25□□□□□ -0.93
SDC3-201ENST00000336798 RNASE3P12724 160 aaKnown RBP9.24□□□□□ -0.93
SDC3-201ENST00000336798 MRPS36P82909 103 aaKnown RBP9.24□□□□□ -0.93
SDC3-201ENST00000336798 ESRGQ1W209 222 aa9.24□□□□□ -0.93
SDC3-201ENST00000336798 PSMG3-AS1Q96PY0 264 aa9.24□□□□□ -0.93
SDC3-201ENST00000336798 C11orf71Q6IPW1 123 aa9.24□□□□□ -0.93
SDC3-201ENST00000336798 NUPR2A6NF83 97 aa9.24□□□□□ -0.93
SDC3-201ENST00000336798 GAS8-AS1O95177 125 aa9.24□□□□□ -0.93
SDC3-201ENST00000336798 ZNF295-AS1Q8N0V1 137 aa9.24□□□□□ -0.93
SDC3-201ENST00000336798 FREM1Q5H8C1 2179 aa9.24□□□□□ -0.93
SDC3-201ENST00000336798 VPREB1P12018 145 aa9.23□□□□□ -0.93
SDC3-201ENST00000336798 C10orf25Q5T742 122 aa9.23□□□□□ -0.93
SDC3-201ENST00000336798 ZNF73O43830 326 aaPredicted RBP9.23□□□□□ -0.93
SDC3-201ENST00000336798 SPINK1P00995 79 aa9.22□□□□□ -0.93
SDC3-201ENST00000336798 CYSRT1A8MQ03 144 aa9.22□□□□□ -0.93
SDC3-201ENST00000336798 C11orf21Q9P2W6 132 aa9.22□□□□□ -0.93
SDC3-201ENST00000336798 LINC00574Q9H8X3 128 aa9.22□□□□□ -0.93
SDC3-201ENST00000336798 PRR14LQ5THK1 2151 aa9.22□□□□□ -0.93
SDC3-201ENST00000336798 PSPHP1O15172 72 aa9.21□□□□□ -0.93
SDC3-201ENST00000336798 BDP1A6H8Y1 2624 aa9.21□□□□□ -0.93
SDC3-201ENST00000336798 IGHV6-1A0A0B4J1U7 121 aa9.21□□□□□ -0.93
SDC3-201ENST00000336798 SERTAD4-AS1Q5TG53 156 aa9.21□□□□□ -0.93
SDC3-201ENST00000336798 DSCAMO60469 2012 aa9.21□□□□□ -0.94
SDC3-201ENST00000336798 IGLV5-52A0A0A0MRZ9 124 aa9.21□□□□□ -0.94
SDC3-201ENST00000336798 CRIP2P52943 208 aaPredicted RBP9.21□□□□□ -0.94
SDC3-201ENST00000336798 PRR3P79522 188 aaKnown RBP9.21□□□□□ -0.94
SDC3-201ENST00000336798 C6orf223Q8N319 242 aa9.21□□□□□ -0.94
SDC3-201ENST00000336798 OTOGLQ3ZCN5 2332 aa9.2□□□□□ -0.94
SDC3-201ENST00000336798 UNQ6190/PRO20217Q6UXQ8 127 aa9.2□□□□□ -0.94
SDC3-201ENST00000336798 NRACQ8N912 160 aa9.19□□□□□ -0.94
SDC3-201ENST00000336798 CDSNQ15517 529 aa9.19□□□□□ -0.94
SDC3-201ENST00000336798 EIF4EBP1Q13541 118 aaPredicted RBP9.19□□□□□ -0.94
SDC3-201ENST00000336798 EBI3Q14213 229 aa9.19□□□□□ -0.94
SDC3-201ENST00000336798 DEFB116Q30KQ4 102 aa9.19□□□□□ -0.94
SDC3-201ENST00000336798 U3KQK5 164 aa9.19□□□□□ -0.94
SDC3-201ENST00000336798 SORL1Q92673 2214 aa9.19□□□□□ -0.94
SDC3-201ENST00000336798 PLA2G2AP14555 144 aa9.18□□□□□ -0.94
SDC3-201ENST00000336798 MRGPRG-AS1Q2M3A8 158 aa9.18□□□□□ -0.94
SDC3-201ENST00000336798 LINC01556Q5JQF7 62 aa9.18□□□□□ -0.94
SDC3-201ENST00000336798 NUP210LQ5VU65 1888 aa9.17□□□□□ -0.94
SDC3-201ENST00000336798 A0A087WVE0 104 aa9.17□□□□□ -0.94
SDC3-201ENST00000336798 CRIP3Q6Q6R5 217 aa9.17□□□□□ -0.94
SDC3-201ENST00000336798 KRTAP10-9P60411 292 aa9.17□□□□□ -0.94
SDC3-201ENST00000336798 Q6JHZ5 121 aa9.17□□□□□ -0.94
SDC3-201ENST00000336798 LINC00474Q9P2X8 69 aa9.17□□□□□ -0.94
SDC3-201ENST00000336798 PYGO1Q9Y3Y4 419 aa9.17□□□□□ -0.94
SDC3-201ENST00000336798 AVPP01185 164 aa9.16□□□□□ -0.94
SDC3-201ENST00000336798 PCOTHQ58A44 107 aa9.16□□□□□ -0.94
SDC3-201ENST00000336798 KIAA1549LQ6ZVL6 1849 aa9.16□□□□□ -0.94
SDC3-201ENST00000336798 C1orf137Q5JT78 98 aa9.16□□□□□ -0.94
SDC3-201ENST00000336798 TECTAO75443 2155 aa9.16□□□□□ -0.94
SDC3-201ENST00000336798 REG3GQ6UW15 175 aa9.15□□□□□ -0.94
SDC3-201ENST00000336798 ALPK3Q96L96 1907 aa9.15□□□□□ -0.94
SDC3-201ENST00000336798 LST1O00453 97 aa9.15□□□□□ -0.94
SDC3-201ENST00000336798 RPL28P46779 137 aaKnown RBP9.15□□□□□ -0.95
SDC3-201ENST00000336798 LINC00208Q96KT6 92 aa9.15□□□□□ -0.95
SDC3-201ENST00000336798 COX6A2Q02221 97 aa9.14□□□□□ -0.95
SDC3-201ENST00000336798 CDC42SE2Q9NRR3 84 aa9.14□□□□□ -0.95
SDC3-201ENST00000336798 PRYO14603 147 aa9.14□□□□□ -0.95
SDC3-201ENST00000336798 NOTCH2Q04721 2471 aa9.14□□□□□ -0.95
SDC3-201ENST00000336798 Q6ZTC4 211 aa9.14□□□□□ -0.95
SDC3-201ENST00000336798 TRBV10-3A0A0K0K1G6 114 aa9.14□□□□□ -0.95
SDC3-201ENST00000336798 CDIP1Q9H305 208 aa9.13□□□□□ -0.95
SDC3-201ENST00000336798 PRO3102Q9H379 93 aa9.13□□□□□ -0.95
SDC3-201ENST00000336798 TRBV7-6A0A0J9YX20 115 aa9.13□□□□□ -0.95
SDC3-201ENST00000336798 KLLNB2CW77 178 aa9.13□□□□□ -0.95
SDC3-201ENST00000336798 IGLV1-40P01703 118 aa9.12□□□□□ -0.95
SDC3-201ENST00000336798 COX17Q14061 63 aa9.12□□□□□ -0.95
SDC3-201ENST00000336798 Q8IZM0 81 aa9.12□□□□□ -0.95
SDC3-201ENST00000336798 TRAV7A0A075B6U4 112 aa9.12□□□□□ -0.95
SDC3-201ENST00000336798 Q8N6K4 173 aa9.12□□□□□ -0.95
SDC3-201ENST00000336798 TTC28Q96AY4 2481 aa9.11□□□□□ -0.95
SDC3-201ENST00000336798 IGLV4-60A0A075B6I1 120 aa9.11□□□□□ -0.95
SDC3-201ENST00000336798 BEAN1Q3B7T3 259 aa9.11□□□□□ -0.95
SDC3-201ENST00000336798 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.11□□□□□ -0.95
SDC3-201ENST00000336798 LINC01547P58512 204 aaPredicted RBP9.11□□□□□ -0.95
SDC3-201ENST00000336798 A0A087WYN8 130 aa9.11□□□□□ -0.95
SDC3-201ENST00000336798 LINC00310P59036 64 aa9.11□□□□□ -0.95
SDC3-201ENST00000336798 PTPN13Q12923 2485 aa9.1□□□□□ -0.95
SDC3-201ENST00000336798 PCDH15Q96QU1 1955 aa9.1□□□□□ -0.95
SDC3-201ENST00000336798 SBSPONQ8IVN8 264 aa9.1□□□□□ -0.95
SDC3-201ENST00000336798 CSPG4Q6UVK1 2322 aa9.1□□□□□ -0.95
SDC3-201ENST00000336798 NTM-AS1Q6ZSK4 140 aa9.09□□□□□ -0.95
SDC3-201ENST00000336798 POLR2KP53803 58 aaKnown RBP9.09□□□□□ -0.95
SDC3-201ENST00000336798 Q9BRP9 147 aa9.09□□□□□ -0.95
SDC3-201ENST00000336798 ODF3L2Q3SX64 289 aa9.09□□□□□ -0.95
SDC3-201ENST00000336798 SONP18583 2426 aaKnown RBP9.08□□□□□ -0.96
SDC3-201ENST00000336798 LINC00242Q5T6M2 205 aa9.08□□□□□ -0.96
SDC3-201ENST00000336798 PCNX3Q9H6A9 2034 aa9.08□□□□□ -0.96
SDC3-201ENST00000336798 PLXNB1O43157 2135 aa9.08□□□□□ -0.96
SDC3-201ENST00000336798 SPG11Q96JI7 2443 aa9.07□□□□□ -0.96
SDC3-201ENST00000336798 Q8N814 137 aa9.07□□□□□ -0.96
SDC3-201ENST00000336798 ARHGAP32A7KAX9 2087 aa9.07□□□□□ -0.96
SDC3-201ENST00000336798 FSTL3O95633 263 aa9.07□□□□□ -0.96
SDC3-201ENST00000336798 A8MTW9 85 aa9.06□□□□□ -0.96
SDC3-201ENST00000336798 FSHBP01225 129 aa9.06□□□□□ -0.96
SDC3-201ENST00000336798 ZNF580Q9UK33 172 aa9.06□□□□□ -0.96
SDC3-201ENST00000336798 C1orf134Q5TEV5 83 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms