RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 WISP2O76076 250 aa5.91□□□□□ -1.46
CIITA-201ENST00000324288 BEAN1Q3B7T3 259 aa5.91□□□□□ -1.46
CIITA-201ENST00000324288 DEFB131BA0A096LNP1 70 aa5.91□□□□□ -1.46
CIITA-201ENST00000324288 MED14OSP0DP75 135 aa5.91□□□□□ -1.46
CIITA-201ENST00000324288 MIFP14174 115 aa5.91□□□□□ -1.46
CIITA-201ENST00000324288 C6orf99Q4VX62 202 aa5.91□□□□□ -1.46
CIITA-201ENST00000324288 IGLV4-3A0A075B6K6 122 aa5.9□□□□□ -1.46
CIITA-201ENST00000324288 TRBV30A0A0K0K1B3 111 aa5.9□□□□□ -1.46
CIITA-201ENST00000324288 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.9□□□□□ -1.46
CIITA-201ENST00000324288 UBE2D3P61077 147 aa5.9□□□□□ -1.46
CIITA-201ENST00000324288 ODF3L1Q8IXM7 274 aa5.9□□□□□ -1.47
CIITA-201ENST00000324288 UBE2D1P51668 147 aa5.9□□□□□ -1.47
CIITA-201ENST00000324288 NDUFC1O43677 76 aa5.9□□□□□ -1.47
CIITA-201ENST00000324288 CFAP126Q5VTH2 177 aa5.9□□□□□ -1.47
CIITA-201ENST00000324288 FLNBO75369 2602 aaKnown RBP5.89□□□□□ -1.47
CIITA-201ENST00000324288 INAFM1C9JVW0 142 aa5.89□□□□□ -1.47
CIITA-201ENST00000324288 C10orf99Q6UWK7 81 aa5.89□□□□□ -1.47
CIITA-201ENST00000324288 K7EMT4 169 aa5.89□□□□□ -1.47
CIITA-201ENST00000324288 U3KQK5 164 aa5.89□□□□□ -1.47
CIITA-201ENST00000324288 COL4A3Q01955 1670 aa5.89□□□□□ -1.47
CIITA-201ENST00000324288 A0A087WVE0 104 aa5.88□□□□□ -1.47
CIITA-201ENST00000324288 SERP1Q9Y6X1 66 aa5.88□□□□□ -1.47
CIITA-201ENST00000324288 WFDC10AQ9H1F0 79 aa5.88□□□□□ -1.47
CIITA-201ENST00000324288 YPEL4Q96NS1 127 aa5.88□□□□□ -1.47
CIITA-201ENST00000324288 PCOTHQ58A44 107 aa5.88□□□□□ -1.47
CIITA-201ENST00000324288 TRAV7A0A075B6U4 112 aa5.87□□□□□ -1.47
CIITA-201ENST00000324288 Q6ZSV7 163 aa5.87□□□□□ -1.47
CIITA-201ENST00000324288 A6NDX4 124 aa5.87□□□□□ -1.47
CIITA-201ENST00000324288 CRYGAP11844 174 aa5.87□□□□□ -1.47
CIITA-201ENST00000324288 SPRY4Q9C004 299 aa5.87□□□□□ -1.47
CIITA-201ENST00000324288 Q6JHZ5 121 aa5.87□□□□□ -1.47
CIITA-201ENST00000324288 Q6ZQY7 126 aa5.87□□□□□ -1.47
CIITA-201ENST00000324288 Q8N9L7 120 aa5.87□□□□□ -1.47
CIITA-201ENST00000324288 MSMPQ1L6U9 139 aa5.87□□□□□ -1.47
CIITA-201ENST00000324288 ZNF843Q8N446 348 aa5.87□□□□□ -1.47
CIITA-201ENST00000324288 EBI3Q14213 229 aa5.87□□□□□ -1.47
CIITA-201ENST00000324288 SMIM11BQ8TCY0 68 aa5.87□□□□□ -1.47
CIITA-201ENST00000324288 LOC100131303A0A0U1RQF7 123 aa5.86□□□□□ -1.47
CIITA-201ENST00000324288 C19orf84I3L1E1 186 aa5.86□□□□□ -1.47
CIITA-201ENST00000324288 TSHBP01222 138 aa5.86□□□□□ -1.47
CIITA-201ENST00000324288 X6R8D5 127 aa5.86□□□□□ -1.47
CIITA-201ENST00000324288 STAB1Q9NY15 2570 aa5.86□□□□□ -1.47
CIITA-201ENST00000324288 HILS1P60008 231 aa5.86□□□□□ -1.47
CIITA-201ENST00000324288 KIR2DL5BQ8NHK3 375 aa5.86□□□□□ -1.47
CIITA-201ENST00000324288 LY6G6CO95867 125 aa5.86□□□□□ -1.47
CIITA-201ENST00000324288 C1orf229Q6ZS94 237 aaPredicted RBP5.86□□□□□ -1.47
CIITA-201ENST00000324288 BBC3Q96PG8 261 aaPredicted RBP5.86□□□□□ -1.47
CIITA-201ENST00000324288 A0A1W2PNU3 283 aaPredicted RBP5.85□□□□□ -1.47
CIITA-201ENST00000324288 M0QY20 66 aa5.85□□□□□ -1.47
CIITA-201ENST00000324288 ZNF295-AS1Q8N0V1 137 aa5.85□□□□□ -1.47
CIITA-201ENST00000324288 LST1O00453 97 aa5.85□□□□□ -1.47
CIITA-201ENST00000324288 PRR9Q5T870 116 aa5.85□□□□□ -1.47
CIITA-201ENST00000324288 C7orf33Q8WU49 177 aa5.85□□□□□ -1.47
CIITA-201ENST00000324288 Q9UF83 564 aa5.85□□□□□ -1.47
CIITA-201ENST00000324288 NRACQ8N912 160 aa5.85□□□□□ -1.47
CIITA-201ENST00000324288 ZNF73O43830 326 aaPredicted RBP5.85□□□□□ -1.47
CIITA-201ENST00000324288 SYCNQ0VAF6 134 aa5.84□□□□□ -1.47
CIITA-201ENST00000324288 IGLV1-47P01700 117 aa5.84□□□□□ -1.47
CIITA-201ENST00000324288 P0C879 139 aa5.84□□□□□ -1.47
CIITA-201ENST00000324288 IBA57-AS1B1ANH7 110 aa5.84□□□□□ -1.47
CIITA-201ENST00000324288 IGF2-ASQ6U949 168 aa5.84□□□□□ -1.47
CIITA-201ENST00000324288 DEFB114Q30KQ6 69 aa5.84□□□□□ -1.47
CIITA-201ENST00000324288 C18orf65Q6ZTR6 163 aa5.84□□□□□ -1.47
CIITA-201ENST00000324288 LY6LH3BQJ8 138 aa5.84□□□□□ -1.48
CIITA-201ENST00000324288 BRWD1-AS2P59051 145 aa5.83□□□□□ -1.48
CIITA-201ENST00000324288 CRIP2P52943 208 aaPredicted RBP5.83□□□□□ -1.48
CIITA-201ENST00000324288 TRBV7-7A0A0K0K1E9 115 aa5.83□□□□□ -1.48
CIITA-201ENST00000324288 PRR3P79522 188 aaKnown RBP5.83□□□□□ -1.48
CIITA-201ENST00000324288 C9orf116Q5BN46 136 aaPredicted RBP5.83□□□□□ -1.48
CIITA-201ENST00000324288 COL27A1Q8IZC6 1860 aaPredicted RBP5.83□□□□□ -1.48
CIITA-201ENST00000324288 CHD6Q8TD26 2715 aa5.82□□□□□ -1.48
CIITA-201ENST00000324288 UBE2D2P62837 147 aa5.82□□□□□ -1.48
CIITA-201ENST00000324288 DMBT1Q9UGM3 2413 aaPredicted RBP5.82□□□□□ -1.48
CIITA-201ENST00000324288 PLAC8L1A1L4L8 177 aa5.82□□□□□ -1.48
CIITA-201ENST00000324288 Q6ZVQ6 151 aa5.82□□□□□ -1.48
CIITA-201ENST00000324288 Q6ZPA2 131 aa5.82□□□□□ -1.48
CIITA-201ENST00000324288 Q8NA96 180 aa5.82□□□□□ -1.48
CIITA-201ENST00000324288 TRBV6-8A0A0A6YYG3 113 aa5.82□□□□□ -1.48
CIITA-201ENST00000324288 LINC00208Q96KT6 92 aa5.82□□□□□ -1.48
CIITA-201ENST00000324288 LYRM9A8MSI8 78 aa5.82□□□□□ -1.48
CIITA-201ENST00000324288 IL17DQ8TAD2 202 aa5.82□□□□□ -1.48
CIITA-201ENST00000324288 IGLV2-11P01706 119 aa5.82□□□□□ -1.48
CIITA-201ENST00000324288 C4orf26Q17RF5 130 aa5.81□□□□□ -1.48
CIITA-201ENST00000324288 IGFL2Q6UWQ7 119 aa5.81□□□□□ -1.48
CIITA-201ENST00000324288 SPINK1P00995 79 aa5.81□□□□□ -1.48
CIITA-201ENST00000324288 KPRPQ5T749 579 aaPredicted RBP5.81□□□□□ -1.48
CIITA-201ENST00000324288 DAZAP2Q15038 168 aaPredicted RBP5.81□□□□□ -1.48
CIITA-201ENST00000324288 SERTAD4-AS1Q5TG53 156 aa5.81□□□□□ -1.48
CIITA-201ENST00000324288 A0A087WYN8 130 aa5.81□□□□□ -1.48
CIITA-201ENST00000324288 ODF3BA8MYP8 253 aa5.81□□□□□ -1.48
CIITA-201ENST00000324288 LINC00310P59036 64 aa5.81□□□□□ -1.48
CIITA-201ENST00000324288 Q6YL49 198 aa5.81□□□□□ -1.48
CIITA-201ENST00000324288 CIRBP-AS1Q8TBR5 109 aa5.8□□□□□ -1.48
CIITA-201ENST00000324288 COL4A4P53420 1690 aaPredicted RBP5.8□□□□□ -1.48
CIITA-201ENST00000324288 NOTCH1P46531 2555 aa5.8□□□□□ -1.48
CIITA-201ENST00000324288 TSPEAR-AS2P59090 65 aa5.8□□□□□ -1.48
CIITA-201ENST00000324288 ESRGQ1W209 222 aa5.8□□□□□ -1.48
CIITA-201ENST00000324288 K7EQG2 157 aa5.8□□□□□ -1.48
CIITA-201ENST00000324288 LMO4P61968 165 aa5.8□□□□□ -1.48
CIITA-201ENST00000324288 DEFB116Q30KQ4 102 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms