RNA–Protein interactions for RNA: ENST00000315544.6

CNOT4-201, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 3,783 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-201ENST00000315544 LINC01587Q99440 93 aa5.35□□□□□ -1.55
CNOT4-201ENST00000315544 FAM222AQ5U5X8 452 aa5.35□□□□□ -1.55
CNOT4-201ENST00000315544 LINC00337Q8N6G1 96 aa5.35□□□□□ -1.55
CNOT4-201ENST00000315544 CYSTM1Q9H1C7 97 aa5.35□□□□□ -1.55
CNOT4-201ENST00000315544 MRPL23Q16540 153 aaKnown RBP5.34□□□□□ -1.55
CNOT4-201ENST00000315544 LINC00308Q8TCZ7 52 aa5.34□□□□□ -1.55
CNOT4-201ENST00000315544 PHLDA3Q9Y5J5 127 aa5.34□□□□□ -1.55
CNOT4-201ENST00000315544 TRAV4A0A0B4J268 109 aa5.34□□□□□ -1.55
CNOT4-201ENST00000315544 OR11H12B2RN74 326 aa5.34□□□□□ -1.55
CNOT4-201ENST00000315544 PRSS1P07477 247 aa5.34□□□□□ -1.55
CNOT4-201ENST00000315544 RPL28P46779 137 aaKnown RBP5.34□□□□□ -1.55
CNOT4-201ENST00000315544 RPL11P62913 178 aaKnown RBP5.34□□□□□ -1.55
CNOT4-201ENST00000315544 MTURNQ8N3F0 131 aa5.34□□□□□ -1.55
CNOT4-201ENST00000315544 OR11H1Q8NG94 326 aa5.34□□□□□ -1.55
CNOT4-201ENST00000315544 OR11H2Q8NH07 326 aa5.34□□□□□ -1.55
CNOT4-201ENST00000315544 NAV2Q8IVL1 2488 aa5.34□□□□□ -1.55
CNOT4-201ENST00000315544 CSPG4Q6UVK1 2322 aa5.34□□□□□ -1.55
CNOT4-201ENST00000315544 TENM3Q9P273 2699 aa5.33□□□□□ -1.56
CNOT4-201ENST00000315544 EMP1P54849 157 aa5.33□□□□□ -1.56
CNOT4-201ENST00000315544 PPDPFLQ8WWR9 84 aa5.33□□□□□ -1.56
CNOT4-201ENST00000315544 SYNJ2BPP57105 145 aa5.33□□□□□ -1.56
CNOT4-201ENST00000315544 KRTAP10-11P60412 298 aa5.33□□□□□ -1.56
CNOT4-201ENST00000315544 TRBV10-1A0A0K0K1A3 114 aa5.33□□□□□ -1.56
CNOT4-201ENST00000315544 A8MWV9 139 aa5.33□□□□□ -1.56
CNOT4-201ENST00000315544 LINC01620Q4KN68 170 aa5.33□□□□□ -1.56
CNOT4-201ENST00000315544 TNXBP22105 4242 aa5.33□□□□□ -1.56
CNOT4-201ENST00000315544 TEX49A0A1B0GTD5 131 aa5.32□□□□□ -1.56
CNOT4-201ENST00000315544 KNCNA6PVL3 124 aa5.32□□□□□ -1.56
CNOT4-201ENST00000315544 ZNF688P0C7X2 276 aa5.32□□□□□ -1.56
CNOT4-201ENST00000315544 HIST2H2BDQ6DRA6 164 aa5.32□□□□□ -1.56
CNOT4-201ENST00000315544 ICOSQ9Y6W8 199 aa5.32□□□□□ -1.56
CNOT4-201ENST00000315544 F8P00451 2351 aa5.32□□□□□ -1.56
CNOT4-201ENST00000315544 SPXQ9BT56 116 aa5.31□□□□□ -1.56
CNOT4-201ENST00000315544 HSPG2P98160 4391 aa5.31□□□□□ -1.56
CNOT4-201ENST00000315544 LY6EQ16553 131 aa5.31□□□□□ -1.56
CNOT4-201ENST00000315544 DEFB136Q30KP8 78 aa5.31□□□□□ -1.56
CNOT4-201ENST00000315544 SMIM15Q7Z3B0 74 aa5.31□□□□□ -1.56
CNOT4-201ENST00000315544 H3BT86 120 aa5.31□□□□□ -1.56
CNOT4-201ENST00000315544 HIST1H4GQ99525 98 aa5.31□□□□□ -1.56
CNOT4-201ENST00000315544 TLN2Q9Y4G6 2542 aa5.31□□□□□ -1.56
CNOT4-201ENST00000315544 TRGV11A0A075B6L2 103 aa5.3□□□□□ -1.56
CNOT4-201ENST00000315544 A0A087WZ39 114 aa5.3□□□□□ -1.56
CNOT4-201ENST00000315544 A0A1B0GUV1 79 aa5.3□□□□□ -1.56
CNOT4-201ENST00000315544 SCGB2A1O75556 95 aa5.3□□□□□ -1.56
CNOT4-201ENST00000315544 KIR2DL5BQ8NHK3 375 aa5.3□□□□□ -1.56
CNOT4-201ENST00000315544 MRPL16Q9NX20 251 aaKnown RBP5.3□□□□□ -1.56
CNOT4-201ENST00000315544 TRBV6-4A0A1B0GX49 114 aa5.3□□□□□ -1.56
CNOT4-201ENST00000315544 COTL1Q14019 142 aa5.3□□□□□ -1.56
CNOT4-201ENST00000315544 DAZ3Q9NR90 486 aaKnown RBP5.3□□□□□ -1.56
CNOT4-201ENST00000315544 PRR34Q9NV39 138 aa5.3□□□□□ -1.56
CNOT4-201ENST00000315544 IGLV4-60A0A075B6I1 120 aa5.3□□□□□ -1.56
CNOT4-201ENST00000315544 FAM159AQ6UWV7 190 aa5.3□□□□□ -1.56
CNOT4-201ENST00000315544 KRTAP7-1Q8IUC3 87 aa5.3□□□□□ -1.56
CNOT4-201ENST00000315544 SLC25A20O43772 301 aa5.29□□□□□ -1.56
CNOT4-201ENST00000315544 A0A1B0GX51 115 aa5.28□□□□□ -1.56
CNOT4-201ENST00000315544 A0A1W2PRX2 142 aa5.28□□□□□ -1.56
CNOT4-201ENST00000315544 PF4V1P10720 104 aa5.28□□□□□ -1.56
CNOT4-201ENST00000315544 TRAV26-1A0A087WT03 109 aa5.28□□□□□ -1.56
CNOT4-201ENST00000315544 APOMO95445 188 aa5.28□□□□□ -1.56
CNOT4-201ENST00000315544 APOBP04114 4563 aaKnown RBP5.27□□□□□ -1.57
CNOT4-201ENST00000315544 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.27□□□□□ -1.57
CNOT4-201ENST00000315544 IGKV2-29A2NJV5 120 aaPredicted RBP5.27□□□□□ -1.57
CNOT4-201ENST00000315544 CIDEAO60543 219 aa5.27□□□□□ -1.57
CNOT4-201ENST00000315544 IGKV3-20P01619 116 aa5.27□□□□□ -1.57
CNOT4-201ENST00000315544 BIRC6Q9NR09 4857 aa5.27□□□□□ -1.57
CNOT4-201ENST00000315544 COX7A2LO14548 114 aa5.27□□□□□ -1.57
CNOT4-201ENST00000315544 TRACP01848 142 aa5.27□□□□□ -1.57
CNOT4-201ENST00000315544 Q6ZTI0 123 aa5.27□□□□□ -1.57
CNOT4-201ENST00000315544 ID1P41134 155 aa5.27□□□□□ -1.57
CNOT4-201ENST00000315544 DAZ4Q86SG3 579 aaKnown RBP5.27□□□□□ -1.57
CNOT4-201ENST00000315544 DEFB104AQ8WTQ1 72 aa5.27□□□□□ -1.57
CNOT4-201ENST00000315544 TM2D3Q9BRN9 247 aa5.27□□□□□ -1.57
CNOT4-201ENST00000315544 HERC2O95714 4834 aa5.26□□□□□ -1.57
CNOT4-201ENST00000315544 EPPK1P58107 5090 aaKnown RBP5.26□□□□□ -1.57
CNOT4-201ENST00000315544 SRSF9Q13242 221 aaKnown RBP eCLIP5.26□□□□□ -1.57
CNOT4-201ENST00000315544 WNK2Q9Y3S1 2297 aa5.26□□□□□ -1.57
CNOT4-201ENST00000315544 KRTAP4-16G5E9R7 235 aaPredicted RBP5.26□□□□□ -1.57
CNOT4-201ENST00000315544 K7EQD1 137 aa5.26□□□□□ -1.57
CNOT4-201ENST00000315544 MTORP42345 2549 aa5.25□□□□□ -1.57
CNOT4-201ENST00000315544 OXTP01178 125 aa5.25□□□□□ -1.57
CNOT4-201ENST00000315544 SPINK8P0C7L1 97 aa5.25□□□□□ -1.57
CNOT4-201ENST00000315544 CLEC2BQ92478 149 aa5.25□□□□□ -1.57
CNOT4-201ENST00000315544 SONP18583 2426 aaKnown RBP5.24□□□□□ -1.57
CNOT4-201ENST00000315544 K7EIL1 84 aa5.24□□□□□ -1.57
CNOT4-201ENST00000315544 DEFB131AP59861 70 aa5.24□□□□□ -1.57
CNOT4-201ENST00000315544 SNRPD3P62318 126 aaKnown RBP5.24□□□□□ -1.57
CNOT4-201ENST00000315544 Q8NAQ8 132 aa5.24□□□□□ -1.57
CNOT4-201ENST00000315544 A0A087WYN8 130 aa5.24□□□□□ -1.57
CNOT4-201ENST00000315544 TMEM262E9PQX1 116 aa5.24□□□□□ -1.57
CNOT4-201ENST00000315544 MGPP08493 103 aa5.24□□□□□ -1.57
CNOT4-201ENST00000315544 NDUFV3P56181 108 aaKnown RBP5.24□□□□□ -1.57
CNOT4-201ENST00000315544 DUX5Q96PT3 197 aa5.24□□□□□ -1.57
CNOT4-201ENST00000315544 IMUPQ9GZP8 106 aa5.24□□□□□ -1.57
CNOT4-201ENST00000315544 Q9H8V8 135 aa5.24□□□□□ -1.57
CNOT4-201ENST00000315544 NDUFA12Q9UI09 145 aa5.24□□□□□ -1.57
CNOT4-201ENST00000315544 GVQW2A0A096LPI5 108 aaPredicted RBP5.24□□□□□ -1.57
CNOT4-201ENST00000315544 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.24□□□□□ -1.57
CNOT4-201ENST00000315544 RNASE13Q5GAN3 156 aaKnown RBP5.24□□□□□ -1.57
CNOT4-201ENST00000315544 LINC01547P58512 204 aaPredicted RBP5.23□□□□□ -1.57
CNOT4-201ENST00000315544 RPL24P83731 157 aaKnown RBP5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms