RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 POLR2AP24928 1970 aaKnown RBP5.54□□□□□ -1.52
LIMCH1-201ENST00000313860 RPL37AP61513 92 aaKnown RBP5.54□□□□□ -1.52
LIMCH1-201ENST00000313860 TRPM6Q9BX84 2022 aa5.54□□□□□ -1.52
LIMCH1-201ENST00000313860 U3KQK5 164 aa5.54□□□□□ -1.52
LIMCH1-201ENST00000313860 ZFP36P26651 326 aaKnown RBP5.54□□□□□ -1.52
LIMCH1-201ENST00000313860 SPINK7P58062 85 aa5.54□□□□□ -1.52
LIMCH1-201ENST00000313860 MUC7Q8TAX7 377 aa5.54□□□□□ -1.52
LIMCH1-201ENST00000313860 SDK2Q58EX2 2172 aa5.54□□□□□ -1.52
LIMCH1-201ENST00000313860 PROK1P58294 105 aa5.53□□□□□ -1.52
LIMCH1-201ENST00000313860 RPS28P62857 69 aaKnown RBP5.53□□□□□ -1.52
LIMCH1-201ENST00000313860 Q1T7F1 81 aa5.53□□□□□ -1.52
LIMCH1-201ENST00000313860 PLXND1Q9Y4D7 1925 aa5.53□□□□□ -1.52
LIMCH1-201ENST00000313860 THSD7AQ9UPZ6 1657 aa5.53□□□□□ -1.52
LIMCH1-201ENST00000313860 FRMPD3Q5JV73 1810 aa5.52□□□□□ -1.53
LIMCH1-201ENST00000313860 IGLV5-52A0A0A0MRZ9 124 aa5.52□□□□□ -1.53
LIMCH1-201ENST00000313860 DSCAML1Q8TD84 2053 aa5.52□□□□□ -1.53
LIMCH1-201ENST00000313860 TP53AIP1Q9HCN2 124 aa5.52□□□□□ -1.53
LIMCH1-201ENST00000313860 EML5Q05BV3 1969 aa5.52□□□□□ -1.53
LIMCH1-201ENST00000313860 ALPK2Q86TB3 2170 aa5.52□□□□□ -1.53
LIMCH1-201ENST00000313860 Q96NJ1 140 aa5.52□□□□□ -1.53
LIMCH1-201ENST00000313860 IGLV3-32A0A0A0MS00 114 aa5.52□□□□□ -1.53
LIMCH1-201ENST00000313860 A8MTW9 85 aa5.51□□□□□ -1.53
LIMCH1-201ENST00000313860 LINC00588Q9Y4M8 146 aa5.51□□□□□ -1.53
LIMCH1-201ENST00000313860 CENPFP49454 3210 aa5.51□□□□□ -1.53
LIMCH1-201ENST00000313860 IGLV7-43P04211 117 aa5.51□□□□□ -1.53
LIMCH1-201ENST00000313860 ELOF1P60002 83 aaKnown RBP5.51□□□□□ -1.53
LIMCH1-201ENST00000313860 KMT2EQ8IZD2 1858 aa5.51□□□□□ -1.53
LIMCH1-201ENST00000313860 DYSFO75923 2080 aa5.5□□□□□ -1.53
LIMCH1-201ENST00000313860 Q8NBF4 154 aa5.5□□□□□ -1.53
LIMCH1-201ENST00000313860 C17orf58Q2M2W7 97 aa5.5□□□□□ -1.53
LIMCH1-201ENST00000313860 LRRK1Q38SD2 2015 aa5.5□□□□□ -1.53
LIMCH1-201ENST00000313860 TDRD6O60522 2096 aaKnown RBP5.5□□□□□ -1.53
LIMCH1-201ENST00000313860 LINC00313P59037 77 aa5.5□□□□□ -1.53
LIMCH1-201ENST00000313860 AKAP6Q13023 2319 aa5.5□□□□□ -1.53
LIMCH1-201ENST00000313860 YLPM1P49750 1951 aaKnown RBP5.5□□□□□ -1.53
LIMCH1-201ENST00000313860 F5P12259 2224 aa5.5□□□□□ -1.53
LIMCH1-201ENST00000313860 C9orf92A6NGG3 77 aa5.5□□□□□ -1.53
LIMCH1-201ENST00000313860 PRAC1Q96KF2 57 aa5.5□□□□□ -1.53
LIMCH1-201ENST00000313860 CACNA1IQ9P0X4 2223 aa5.49□□□□□ -1.53
LIMCH1-201ENST00000313860 IGLV3-21P80748 117 aaPredicted RBP5.49□□□□□ -1.53
LIMCH1-201ENST00000313860 H3BUA1 57 aa5.49□□□□□ -1.53
LIMCH1-201ENST00000313860 BBC3Q96PG8 261 aaPredicted RBP5.49□□□□□ -1.53
LIMCH1-201ENST00000313860 FSTL3O95633 263 aa5.49□□□□□ -1.53
LIMCH1-201ENST00000313860 PRR15Q8IV56 129 aa5.49□□□□□ -1.53
LIMCH1-201ENST00000313860 TICRRQ7Z2Z1 1910 aa5.49□□□□□ -1.53
LIMCH1-201ENST00000313860 GTF3C1Q12789 2109 aa5.48□□□□□ -1.53
LIMCH1-201ENST00000313860 SMIM1B2RUZ4 78 aa5.48□□□□□ -1.53
LIMCH1-201ENST00000313860 CUL9Q8IWT3 2517 aa5.48□□□□□ -1.53
LIMCH1-201ENST00000313860 KPRPQ5T749 579 aaPredicted RBP5.48□□□□□ -1.53
LIMCH1-201ENST00000313860 DOCK3Q8IZD9 2030 aa5.48□□□□□ -1.53
LIMCH1-201ENST00000313860 SPATA3Q8NHX4 192 aa5.48□□□□□ -1.53
LIMCH1-201ENST00000313860 EP400Q96L91 3159 aa5.48□□□□□ -1.53
LIMCH1-201ENST00000313860 COL4A5P29400 1685 aa5.47□□□□□ -1.53
LIMCH1-201ENST00000313860 CSAG1Q6PB30 78 aa5.47□□□□□ -1.53
LIMCH1-201ENST00000313860 SPTBN1Q01082 2364 aaKnown RBP5.47□□□□□ -1.53
LIMCH1-201ENST00000313860 VWA8A3KMH1 1905 aa5.47□□□□□ -1.53
LIMCH1-201ENST00000313860 ARHGAP32A7KAX9 2087 aa5.47□□□□□ -1.53
LIMCH1-201ENST00000313860 UNQ6190/PRO20217Q6UXQ8 127 aa5.47□□□□□ -1.53
LIMCH1-201ENST00000313860 DAZAP2Q15038 168 aaPredicted RBP5.47□□□□□ -1.53
LIMCH1-201ENST00000313860 COX8CQ7Z4L0 72 aa5.46□□□□□ -1.53
LIMCH1-201ENST00000313860 DNAH12Q6ZR08 3092 aa5.46□□□□□ -1.54
LIMCH1-201ENST00000313860 C22orf24Q9Y442 160 aa5.46□□□□□ -1.54
LIMCH1-201ENST00000313860 COL4A3Q01955 1670 aa5.46□□□□□ -1.54
LIMCH1-201ENST00000313860 MED12Q93074 2177 aa5.46□□□□□ -1.54
LIMCH1-201ENST00000313860 POLR2KP53803 58 aaKnown RBP5.46□□□□□ -1.54
LIMCH1-201ENST00000313860 CEP350Q5VT06 3117 aa5.45□□□□□ -1.54
LIMCH1-201ENST00000313860 NUP210LQ5VU65 1888 aa5.45□□□□□ -1.54
LIMCH1-201ENST00000313860 KIF26BQ2KJY2 2108 aa5.45□□□□□ -1.54
LIMCH1-201ENST00000313860 PRR9Q5T870 116 aa5.45□□□□□ -1.54
LIMCH1-201ENST00000313860 TSPEAR-AS2P59090 65 aa5.45□□□□□ -1.54
LIMCH1-201ENST00000313860 FAM167A-AS1Q96KT0 104 aa5.45□□□□□ -1.54
LIMCH1-201ENST00000313860 TRBV6-4A0A1B0GX49 114 aa5.44□□□□□ -1.54
LIMCH1-201ENST00000313860 H1FX-AS1Q4G0G2 97 aa5.44□□□□□ -1.54
LIMCH1-201ENST00000313860 PAPPA2Q9BXP8 1791 aa5.44□□□□□ -1.54
LIMCH1-201ENST00000313860 LY6G6DO95868 133 aa5.44□□□□□ -1.54
LIMCH1-201ENST00000313860 I3L2K1 104 aa5.43□□□□□ -1.54
LIMCH1-201ENST00000313860 THSD7BQ9C0I4 1608 aa5.43□□□□□ -1.54
LIMCH1-201ENST00000313860 TCF20Q9UGU0 1960 aaKnown RBP5.43□□□□□ -1.54
LIMCH1-201ENST00000313860 SMCR5Q8TEV8 140 aa5.43□□□□□ -1.54
LIMCH1-201ENST00000313860 FER1L5A0AVI2 2057 aa5.43□□□□□ -1.54
LIMCH1-201ENST00000313860 APC2O95996 2303 aa5.43□□□□□ -1.54
LIMCH1-201ENST00000313860 MUC4Q99102 2169 aa5.43□□□□□ -1.54
LIMCH1-201ENST00000313860 H3BPC8 53 aa5.43□□□□□ -1.54
LIMCH1-201ENST00000313860 AMELXQ99217 191 aa5.43□□□□□ -1.54
LIMCH1-201ENST00000313860 K7EQZ3 153 aa5.42□□□□□ -1.54
LIMCH1-201ENST00000313860 ABCA4P78363 2273 aa5.42□□□□□ -1.54
LIMCH1-201ENST00000313860 MRPL34Q9BQ48 92 aaKnown RBP5.41□□□□□ -1.54
LIMCH1-201ENST00000313860 PLXNA2O75051 1894 aa5.41□□□□□ -1.54
LIMCH1-201ENST00000313860 K7EIM0 57 aa5.41□□□□□ -1.54
LIMCH1-201ENST00000313860 CHTF8P0CG12 524 aa5.41□□□□□ -1.54
LIMCH1-201ENST00000313860 Q8IZM0 81 aa5.41□□□□□ -1.54
LIMCH1-201ENST00000313860 FREM3P0C091 2139 aa5.4□□□□□ -1.54
LIMCH1-201ENST00000313860 NHLRC4P0CG21 123 aaPredicted RBP5.4□□□□□ -1.54
LIMCH1-201ENST00000313860 Q6ZRU5 148 aa5.4□□□□□ -1.54
LIMCH1-201ENST00000313860 M0QY20 66 aa5.4□□□□□ -1.55
LIMCH1-201ENST00000313860 SHANK1Q9Y566 2161 aa5.4□□□□□ -1.55
LIMCH1-201ENST00000313860 LINC01548A6NM66 108 aa5.4□□□□□ -1.55
LIMCH1-201ENST00000313860 IGLV5-39A0A0G2JS06 123 aa5.4□□□□□ -1.55
LIMCH1-201ENST00000313860 COX6A2Q02221 97 aa5.4□□□□□ -1.55
LIMCH1-201ENST00000313860 ADAMTSL4-AS1Q5T5F5 129 aa5.4□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 91.2 ms