RNA–Protein interactions for RNA: ENST00000303406.4

HOXC4-201, Transcript of homeobox C4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC4, Length 1,524 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4-201ENST00000303406 F5H768 121 aa13.54□□□□□ -0.24
HOXC4-201ENST00000303406 KRTAP10-11P60412 298 aa13.54□□□□□ -0.24
HOXC4-201ENST00000303406 CELA1Q9UNI1 258 aa13.52□□□□□ -0.25
HOXC4-201ENST00000303406 IGLV4-60A0A075B6I1 120 aa13.51□□□□□ -0.25
HOXC4-201ENST00000303406 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.51□□□□□ -0.25
HOXC4-201ENST00000303406 DEFB4AO15263 64 aa13.51□□□□□ -0.25
HOXC4-201ENST00000303406 SH2D6Q7Z4S9 175 aa13.51□□□□□ -0.25
HOXC4-201ENST00000303406 A0A0B4J2C4 111 aa13.5□□□□□ -0.25
HOXC4-201ENST00000303406 CFC1BP0CG36 223 aa13.5□□□□□ -0.25
HOXC4-201ENST00000303406 CFC1P0CG37 223 aa13.5□□□□□ -0.25
HOXC4-201ENST00000303406 MIAQ16674 131 aa13.5□□□□□ -0.25
HOXC4-201ENST00000303406 PRIMA1Q86XR5 153 aa13.5□□□□□ -0.25
HOXC4-201ENST00000303406 MUSTN1Q8IVN3 82 aa13.5□□□□□ -0.25
HOXC4-201ENST00000303406 IFITM1P13164 125 aa13.49□□□□□ -0.25
HOXC4-201ENST00000303406 PGPEP1Q9NXJ5 209 aa13.49□□□□□ -0.25
HOXC4-201ENST00000303406 A4D1N5 150 aa13.49□□□□□ -0.25
HOXC4-201ENST00000303406 APOMO95445 188 aa13.48□□□□□ -0.25
HOXC4-201ENST00000303406 HERV-K104P63124 156 aa13.48□□□□□ -0.25
HOXC4-201ENST00000303406 CIRBPQ14011 172 aaKnown RBP13.48□□□□□ -0.25
HOXC4-201ENST00000303406 TSPAN13O95857 204 aa13.47□□□□□ -0.25
HOXC4-201ENST00000303406 RBX1P62877 108 aa13.47□□□□□ -0.25
HOXC4-201ENST00000303406 MRPL23Q16540 153 aaKnown RBP13.47□□□□□ -0.25
HOXC4-201ENST00000303406 LYRM7Q5U5X0 104 aa13.47□□□□□ -0.25
HOXC4-201ENST00000303406 PRO1854Q9UHT4 67 aa13.47□□□□□ -0.25
HOXC4-201ENST00000303406 IGHV3OR16-9A0A0B4J2B5 98 aa13.46□□□□□ -0.25
HOXC4-201ENST00000303406 ZNF625Q96I27 306 aaPredicted RBP13.46□□□□□ -0.25
HOXC4-201ENST00000303406 Q9H8V8 135 aa13.46□□□□□ -0.25
HOXC4-201ENST00000303406 LINC00959A0A1B0GUT2 108 aa13.45□□□□□ -0.26
HOXC4-201ENST00000303406 ADAMTSL4-AS1Q5T5F5 129 aa13.45□□□□□ -0.26
HOXC4-201ENST00000303406 LINC01561Q8N1V8 128 aa13.45□□□□□ -0.26
HOXC4-201ENST00000303406 PPDPFQ9H3Y8 114 aa13.45□□□□□ -0.26
HOXC4-201ENST00000303406 A0A087WZ39 114 aa13.44□□□□□ -0.26
HOXC4-201ENST00000303406 COPS9Q8WXC6 57 aa13.44□□□□□ -0.26
HOXC4-201ENST00000303406 C11orf68Q9H3H3 251 aaKnown RBP13.44□□□□□ -0.26
HOXC4-201ENST00000303406 ICOSQ9Y6W8 199 aa13.44□□□□□ -0.26
HOXC4-201ENST00000303406 TMEM262E9PQX1 116 aa13.44□□□□□ -0.26
HOXC4-201ENST00000303406 FLNBO75369 2602 aaKnown RBP13.42□□□□□ -0.26
HOXC4-201ENST00000303406 H3BNG1 76 aa13.42□□□□□ -0.26
HOXC4-201ENST00000303406 SS18Q15532 418 aa13.42□□□□□ -0.26
HOXC4-201ENST00000303406 COX7B2Q8TF08 81 aa13.42□□□□□ -0.26
HOXC4-201ENST00000303406 LELP1Q5T871 98 aa13.41□□□□□ -0.26
HOXC4-201ENST00000303406 SFTA2Q6UW10 78 aa13.41□□□□□ -0.26
HOXC4-201ENST00000303406 A0A096LPF7 62 aa13.4□□□□□ -0.26
HOXC4-201ENST00000303406 CYSRT1A8MQ03 144 aa13.4□□□□□ -0.26
HOXC4-201ENST00000303406 EIF4EBP3O60516 100 aaPredicted RBP13.4□□□□□ -0.26
HOXC4-201ENST00000303406 IGHV3-33P01772 117 aa13.4□□□□□ -0.26
HOXC4-201ENST00000303406 PRSS2P07478 247 aa13.4□□□□□ -0.26
HOXC4-201ENST00000303406 TRRAPQ9Y4A5 3859 aa13.4□□□□□ -0.26
HOXC4-201ENST00000303406 IGKV3OR2-268A0A0C4DH90 116 aa13.39□□□□□ -0.27
HOXC4-201ENST00000303406 ERG28Q9UKR5 140 aa13.39□□□□□ -0.27
HOXC4-201ENST00000303406 F8W1H4 67 aa13.38□□□□□ -0.27
HOXC4-201ENST00000303406 TRBV20-1A0A075B6N2 111 aa13.37□□□□□ -0.27
HOXC4-201ENST00000303406 G3V4G9 280 aa13.37□□□□□ -0.27
HOXC4-201ENST00000303406 HTN3P15516 51 aa13.37□□□□□ -0.27
HOXC4-201ENST00000303406 MEIG1Q5JSS6 88 aa13.36□□□□□ -0.27
HOXC4-201ENST00000303406 LINC00308Q8TCZ7 52 aa13.36□□□□□ -0.27
HOXC4-201ENST00000303406 RETNQ9HD89 108 aa13.36□□□□□ -0.27
HOXC4-201ENST00000303406 CMYA5Q8N3K9 4069 aa13.35□□□□□ -0.27
HOXC4-201ENST00000303406 LOC107984156A0A0G2JMH3 177 aa13.34□□□□□ -0.27
HOXC4-201ENST00000303406 ARL17AQ8IVW1 177 aa13.34□□□□□ -0.27
HOXC4-201ENST00000303406 DNAH3Q8TD57 4116 aa13.33□□□□□ -0.28
HOXC4-201ENST00000303406 H3BMG7 143 aa13.33□□□□□ -0.28
HOXC4-201ENST00000303406 OCIAD2Q56VL3 154 aa13.33□□□□□ -0.28
HOXC4-201ENST00000303406 CD164L2Q6UWJ8 174 aa13.33□□□□□ -0.28
HOXC4-201ENST00000303406 C5orf38Q86SI9 138 aa13.33□□□□□ -0.28
HOXC4-201ENST00000303406 TRBV30A0A0K0K1B3 111 aa13.32□□□□□ -0.28
HOXC4-201ENST00000303406 Q8IZM0 81 aa13.32□□□□□ -0.28
HOXC4-201ENST00000303406 LINC00269Q8N2A0 174 aa13.32□□□□□ -0.28
HOXC4-201ENST00000303406 PRO0461Q9UI25 63 aa13.32□□□□□ -0.28
HOXC4-201ENST00000303406 XCL1P47992 114 aa13.31□□□□□ -0.28
HOXC4-201ENST00000303406 REG3AQ06141 175 aa13.31□□□□□ -0.28
HOXC4-201ENST00000303406 TOMM7Q9P0U1 55 aa13.31□□□□□ -0.28
HOXC4-201ENST00000303406 IBA57-AS1B1ANH7 110 aa13.3□□□□□ -0.28
HOXC4-201ENST00000303406 ANGP03950 147 aaKnown RBP13.3□□□□□ -0.28
HOXC4-201ENST00000303406 LYPD5Q6UWN5 251 aa13.3□□□□□ -0.28
HOXC4-201ENST00000303406 DAND5Q8N907 189 aa13.3□□□□□ -0.28
HOXC4-201ENST00000303406 K7ERU9 68 aa13.29□□□□□ -0.28
HOXC4-201ENST00000303406 NPC2P61916 151 aa13.29□□□□□ -0.28
HOXC4-201ENST00000303406 SCGB1C2P0DMR2 95 aa13.29□□□□□ -0.28
HOXC4-201ENST00000303406 PSMB2P49721 201 aa13.29□□□□□ -0.28
HOXC4-201ENST00000303406 NBEAL2Q6ZNJ1 2754 aa13.28□□□□□ -0.28
HOXC4-201ENST00000303406 FBN1P35555 2871 aaKnown RBP13.28□□□□□ -0.28
HOXC4-201ENST00000303406 COX7A2LO14548 114 aa13.28□□□□□ -0.28
HOXC4-201ENST00000303406 TCL1BO95988 128 aa13.28□□□□□ -0.28
HOXC4-201ENST00000303406 Q1RN00 199 aa13.28□□□□□ -0.28
HOXC4-201ENST00000303406 KPRPQ5T749 579 aaPredicted RBP13.28□□□□□ -0.28
HOXC4-201ENST00000303406 SOSTDC1Q6X4U4 206 aa13.28□□□□□ -0.28
HOXC4-201ENST00000303406 Q6ZTC4 211 aa13.28□□□□□ -0.28
HOXC4-201ENST00000303406 CHCHD10Q8WYQ3 142 aaPredicted RBP13.28□□□□□ -0.28
HOXC4-201ENST00000303406 PRR34Q9NV39 138 aa13.28□□□□□ -0.28
HOXC4-201ENST00000303406 CLPSL2Q6UWE3 100 aa13.27□□□□□ -0.29
HOXC4-201ENST00000303406 CXCL5P42830 114 aa13.26□□□□□ -0.29
HOXC4-201ENST00000303406 A0A0J9YWU9 116 aa13.25□□□□□ -0.29
HOXC4-201ENST00000303406 C6orf226Q5I0X4 101 aa13.25□□□□□ -0.29
HOXC4-201ENST00000303406 SPATA25Q9BR10 227 aa13.25□□□□□ -0.29
HOXC4-201ENST00000303406 BAHCC1Q9P281 2608 aa13.25□□□□□ -0.29
HOXC4-201ENST00000303406 A0A0U1RRA0 63 aa13.24□□□□□ -0.29
HOXC4-201ENST00000303406 H7C2G1 150 aa13.23□□□□□ -0.29
HOXC4-201ENST00000303406 RPL13AP40429 203 aaKnown RBP13.23□□□□□ -0.29
HOXC4-201ENST00000303406 FOXI1Q12951 378 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms