RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 LITAFQ99732 161 aa11.88□□□□□ -0.51
CPSF4-201ENST00000292476 GEMIN7Q9H840 131 aaKnown RBP11.88□□□□□ -0.51
CPSF4-201ENST00000292476 Q9UF83 564 aa11.88□□□□□ -0.51
CPSF4-201ENST00000292476 IGHV3-64A0A075B6Q5 118 aa11.87□□□□□ -0.51
CPSF4-201ENST00000292476 ZFAND6Q6FIF0 208 aa11.87□□□□□ -0.51
CPSF4-201ENST00000292476 DAZ4Q86SG3 579 aaKnown RBP11.87□□□□□ -0.51
CPSF4-201ENST00000292476 MUSTN1Q8IVN3 82 aa11.87□□□□□ -0.51
CPSF4-201ENST00000292476 DAZ3Q9NR90 486 aaKnown RBP11.87□□□□□ -0.51
CPSF4-201ENST00000292476 NDUFA12Q9UI09 145 aa11.87□□□□□ -0.51
CPSF4-201ENST00000292476 TRGV4A0A0C4DH28 118 aa11.87□□□□□ -0.51
CPSF4-201ENST00000292476 TRBV6-4A0A1B0GX49 114 aa11.87□□□□□ -0.51
CPSF4-201ENST00000292476 K7EQD1 137 aa11.87□□□□□ -0.51
CPSF4-201ENST00000292476 RPL36AP83881 106 aaKnown RBP11.87□□□□□ -0.51
CPSF4-201ENST00000292476 SH2D6Q7Z4S9 175 aa11.87□□□□□ -0.51
CPSF4-201ENST00000292476 RPL36ALQ969Q0 106 aaKnown RBP11.87□□□□□ -0.51
CPSF4-201ENST00000292476 ERG28Q9UKR5 140 aa11.87□□□□□ -0.51
CPSF4-201ENST00000292476 DEFB121Q5J5C9 76 aa11.86□□□□□ -0.51
CPSF4-201ENST00000292476 IGHV4-28A0A0C4DH34 117 aa11.85□□□□□ -0.51
CPSF4-201ENST00000292476 TCL1BO95988 128 aa11.85□□□□□ -0.51
CPSF4-201ENST00000292476 SMCPP49901 116 aaPredicted RBP11.85□□□□□ -0.51
CPSF4-201ENST00000292476 SPATA25Q9BR10 227 aa11.85□□□□□ -0.51
CPSF4-201ENST00000292476 TRAV8-3A0A0A6YYJ7 113 aa11.84□□□□□ -0.51
CPSF4-201ENST00000292476 SPART-AS1P0CW21 52 aa11.84□□□□□ -0.51
CPSF4-201ENST00000292476 DEFB130BP0DP73 79 aa11.84□□□□□ -0.51
CPSF4-201ENST00000292476 DEFB130AP0DP74 79 aa11.84□□□□□ -0.51
CPSF4-201ENST00000292476 IFITM1P13164 125 aa11.84□□□□□ -0.51
CPSF4-201ENST00000292476 HERVK_113P63121 156 aa11.84□□□□□ -0.51
CPSF4-201ENST00000292476 MIAQ16674 131 aa11.84□□□□□ -0.51
CPSF4-201ENST00000292476 DGAT2L7PQ6IED9 249 aa11.84□□□□□ -0.51
CPSF4-201ENST00000292476 IGHV3-38A0A0C4DH36 116 aa11.84□□□□□ -0.51
CPSF4-201ENST00000292476 SCGB1A1P11684 91 aa11.84□□□□□ -0.51
CPSF4-201ENST00000292476 FAM222AQ5U5X8 452 aa11.84□□□□□ -0.51
CPSF4-201ENST00000292476 Q8NAQ8 132 aa11.84□□□□□ -0.51
CPSF4-201ENST00000292476 NDUFA1O15239 70 aa11.83□□□□□ -0.52
CPSF4-201ENST00000292476 EIF4EBP3O60516 100 aaPredicted RBP11.83□□□□□ -0.52
CPSF4-201ENST00000292476 SCGB1C2P0DMR2 95 aa11.83□□□□□ -0.52
CPSF4-201ENST00000292476 FOXI1Q12951 378 aa11.83□□□□□ -0.52
CPSF4-201ENST00000292476 RNASE13Q5GAN3 156 aaKnown RBP11.83□□□□□ -0.52
CPSF4-201ENST00000292476 GAGE12HA6NDE8 117 aa11.82□□□□□ -0.52
CPSF4-201ENST00000292476 SPINK8P0C7L1 97 aa11.82□□□□□ -0.52
CPSF4-201ENST00000292476 TEN1Q86WV5 123 aa11.82□□□□□ -0.52
CPSF4-201ENST00000292476 GTSF1LQ9H1H1 148 aa11.82□□□□□ -0.52
CPSF4-201ENST00000292476 TGP01266 2768 aa11.81□□□□□ -0.52
CPSF4-201ENST00000292476 IGLV5-39A0A0G2JS06 123 aa11.81□□□□□ -0.52
CPSF4-201ENST00000292476 TRBV30A0A0K0K1B3 111 aa11.81□□□□□ -0.52
CPSF4-201ENST00000292476 FHL2Q14192 279 aa11.81□□□□□ -0.52
CPSF4-201ENST00000292476 MTURNQ8N3F0 131 aa11.81□□□□□ -0.52
CPSF4-201ENST00000292476 PPDPFLQ8WWR9 84 aa11.81□□□□□ -0.52
CPSF4-201ENST00000292476 LINC01600Q96MT4 127 aa11.81□□□□□ -0.52
CPSF4-201ENST00000292476 H7C423 109 aa11.81□□□□□ -0.52
CPSF4-201ENST00000292476 DAD1P61803 113 aa11.81□□□□□ -0.52
CPSF4-201ENST00000292476 SIGMAR1Q99720 223 aa11.81□□□□□ -0.52
CPSF4-201ENST00000292476 CDKN2A-AS1Q9UH64 79 aa11.81□□□□□ -0.52
CPSF4-201ENST00000292476 SFTA2Q6UW10 78 aa11.79□□□□□ -0.52
CPSF4-201ENST00000292476 COPS9Q8WXC6 57 aa11.78□□□□□ -0.52
CPSF4-201ENST00000292476 TMEM101Q96IK0 257 aa11.78□□□□□ -0.52
CPSF4-201ENST00000292476 PRO0255Q9UI72 69 aa11.78□□□□□ -0.52
CPSF4-201ENST00000292476 ATP5G1P05496 136 aa11.78□□□□□ -0.52
CPSF4-201ENST00000292476 CIRBPQ14011 172 aaKnown RBP11.78□□□□□ -0.52
CPSF4-201ENST00000292476 ATXN8Q156A1 80 aa11.78□□□□□ -0.52
CPSF4-201ENST00000292476 ADAMTSL4-AS1Q5T5F5 129 aa11.78□□□□□ -0.52
CPSF4-201ENST00000292476 LINC00242Q5T6M2 205 aa11.78□□□□□ -0.52
CPSF4-201ENST00000292476 PPDPFQ9H3Y8 114 aa11.78□□□□□ -0.52
CPSF4-201ENST00000292476 NTM-AS1Q6ZSK4 140 aa11.77□□□□□ -0.53
CPSF4-201ENST00000292476 C11orf68Q9H3H3 251 aaKnown RBP11.77□□□□□ -0.53
CPSF4-201ENST00000292476 GAGE12JA6NER3 117 aa11.76□□□□□ -0.53
CPSF4-201ENST00000292476 PRSS2P07478 247 aa11.76□□□□□ -0.53
CPSF4-201ENST00000292476 GAGE4Q13068 117 aa11.76□□□□□ -0.53
CPSF4-201ENST00000292476 GAGE5Q13069 117 aa11.76□□□□□ -0.53
CPSF4-201ENST00000292476 Q1RN00 199 aa11.76□□□□□ -0.53
CPSF4-201ENST00000292476 TMEM243Q9BU79 118 aa11.76□□□□□ -0.53
CPSF4-201ENST00000292476 DEFB4AO15263 64 aa11.75□□□□□ -0.53
CPSF4-201ENST00000292476 CDC42SE2Q9NRR3 84 aa11.75□□□□□ -0.53
CPSF4-201ENST00000292476 SLC25A20O43772 301 aa11.75□□□□□ -0.53
CPSF4-201ENST00000292476 LINC00694P0DN24 101 aa11.75□□□□□ -0.53
CPSF4-201ENST00000292476 SMIM1B2RUZ4 78 aa11.74□□□□□ -0.53
CPSF4-201ENST00000292476 COX6A2Q02221 97 aa11.74□□□□□ -0.53
CPSF4-201ENST00000292476 ICOSQ9Y6W8 199 aa11.74□□□□□ -0.53
CPSF4-201ENST00000292476 COX6CP09669 75 aa11.73□□□□□ -0.53
CPSF4-201ENST00000292476 HERV-K104P63124 156 aa11.73□□□□□ -0.53
CPSF4-201ENST00000292476 UBE2L6O14933 153 aa11.72□□□□□ -0.53
CPSF4-201ENST00000292476 PAX4O43316 350 aa11.72□□□□□ -0.53
CPSF4-201ENST00000292476 TRIAP1O43715 76 aa11.72□□□□□ -0.53
CPSF4-201ENST00000292476 LINC01620Q4KN68 170 aa11.72□□□□□ -0.53
CPSF4-201ENST00000292476 ANKRD29Q8N6D5 301 aa11.72□□□□□ -0.53
CPSF4-201ENST00000292476 B9D2Q9BPU9 175 aa11.72□□□□□ -0.53
CPSF4-201ENST00000292476 C9JAW5 83 aa11.71□□□□□ -0.53
CPSF4-201ENST00000292476 H7C2G1 150 aa11.71□□□□□ -0.53
CPSF4-201ENST00000292476 CARD19Q96LW7 228 aa11.71□□□□□ -0.53
CPSF4-201ENST00000292476 CELA1Q9UNI1 258 aa11.71□□□□□ -0.53
CPSF4-201ENST00000292476 F5H768 121 aa11.71□□□□□ -0.54
CPSF4-201ENST00000292476 Q9H8V8 135 aa11.71□□□□□ -0.54
CPSF4-201ENST00000292476 DNAH9Q9NYC9 4486 aa11.71□□□□□ -0.54
CPSF4-201ENST00000292476 GYPEP15421 78 aa11.7□□□□□ -0.54
CPSF4-201ENST00000292476 ZNF625Q96I27 306 aaPredicted RBP11.7□□□□□ -0.54
CPSF4-201ENST00000292476 RETNQ9HD89 108 aa11.7□□□□□ -0.54
CPSF4-201ENST00000292476 TRBV10-2A0A0K0K1G8 114 aa11.69□□□□□ -0.54
CPSF4-201ENST00000292476 TMEM262E9PQX1 116 aa11.69□□□□□ -0.54
CPSF4-201ENST00000292476 TRAV13-1A0A0B4J241 112 aa11.68□□□□□ -0.54
CPSF4-201ENST00000292476 LOC100131303A0A0U1RQF7 123 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 98.1 ms