RNA–Protein interactions for RNA: ENST00000284767.9

PDLIM3-201, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 2,589 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-201ENST00000284767 PF4P02776 101 aa13.12□□□□□ -0.31
PDLIM3-201ENST00000284767 NPC2P61916 151 aa13.12□□□□□ -0.31
PDLIM3-201ENST00000284767 CLEC2BQ92478 149 aa13.12□□□□□ -0.31
PDLIM3-201ENST00000284767 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.12□□□□□ -0.31
PDLIM3-201ENST00000284767 IGKV2-29A2NJV5 120 aaPredicted RBP13.12□□□□□ -0.31
PDLIM3-201ENST00000284767 RPL35AP18077 110 aaKnown RBP13.12□□□□□ -0.31
PDLIM3-201ENST00000284767 TIRAPP58753 221 aa13.12□□□□□ -0.31
PDLIM3-201ENST00000284767 IGLV5-45A0A087WSX0 123 aa13.11□□□□□ -0.31
PDLIM3-201ENST00000284767 Q6ZSN1 163 aa13.11□□□□□ -0.31
PDLIM3-201ENST00000284767 LINC00467Q9BRT7 94 aa13.11□□□□□ -0.31
PDLIM3-201ENST00000284767 C19orf73Q9NVV2 129 aa13.11□□□□□ -0.31
PDLIM3-201ENST00000284767 GAGE12JA6NER3 117 aa13.11□□□□□ -0.31
PDLIM3-201ENST00000284767 GAGE7O76087 117 aa13.11□□□□□ -0.31
PDLIM3-201ENST00000284767 GAGE12FP0CL80 117 aa13.11□□□□□ -0.31
PDLIM3-201ENST00000284767 GAGE12GP0CL81 117 aa13.11□□□□□ -0.31
PDLIM3-201ENST00000284767 GAGE12IP0CL82 117 aa13.11□□□□□ -0.31
PDLIM3-201ENST00000284767 GAGE4Q13068 117 aa13.11□□□□□ -0.31
PDLIM3-201ENST00000284767 B5MCH6 92 aa13.1□□□□□ -0.31
PDLIM3-201ENST00000284767 SS18L2Q9UHA2 77 aa13.1□□□□□ -0.31
PDLIM3-201ENST00000284767 TEP1Q99973 2627 aaKnown RBP13.1□□□□□ -0.31
PDLIM3-201ENST00000284767 GIG44P09565 113 aaPredicted RBP13.1□□□□□ -0.31
PDLIM3-201ENST00000284767 IGHV3-53P01767 116 aa13.09□□□□□ -0.31
PDLIM3-201ENST00000284767 CIRBPQ14011 172 aaKnown RBP13.09□□□□□ -0.31
PDLIM3-201ENST00000284767 BEAN1Q3B7T3 259 aa13.09□□□□□ -0.31
PDLIM3-201ENST00000284767 LINC00482Q8N8I6 264 aa13.09□□□□□ -0.31
PDLIM3-201ENST00000284767 CDKN2A-AS1Q9UH64 79 aa13.09□□□□□ -0.31
PDLIM3-201ENST00000284767 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.08□□□□□ -0.32
PDLIM3-201ENST00000284767 TMEM101Q96IK0 257 aa13.08□□□□□ -0.32
PDLIM3-201ENST00000284767 DAND5Q8N907 189 aa13.05□□□□□ -0.32
PDLIM3-201ENST00000284767 COPS9Q8WXC6 57 aa13.05□□□□□ -0.32
PDLIM3-201ENST00000284767 IGHV3-38A0A0C4DH36 116 aa13.05□□□□□ -0.32
PDLIM3-201ENST00000284767 IGLV5-39A0A0G2JS06 123 aa13.05□□□□□ -0.32
PDLIM3-201ENST00000284767 LINC00308Q8TCZ7 52 aa13.05□□□□□ -0.32
PDLIM3-201ENST00000284767 CCDC179H3BU77 68 aa13.04□□□□□ -0.32
PDLIM3-201ENST00000284767 HERVK_113P63121 156 aa13.04□□□□□ -0.32
PDLIM3-201ENST00000284767 DGAT2L7PQ6IED9 249 aa13.04□□□□□ -0.32
PDLIM3-201ENST00000284767 NBEAL2Q6ZNJ1 2754 aa13.04□□□□□ -0.32
PDLIM3-201ENST00000284767 RS1O15537 224 aa13.04□□□□□ -0.32
PDLIM3-201ENST00000284767 TRGV1A0A0A0MS02 117 aa13.02□□□□□ -0.32
PDLIM3-201ENST00000284767 TRBV7-7A0A0K0K1E9 115 aa13.02□□□□□ -0.32
PDLIM3-201ENST00000284767 ACYP1P07311 99 aa13.02□□□□□ -0.32
PDLIM3-201ENST00000284767 FAM19A3Q7Z5A8 133 aa13.02□□□□□ -0.32
PDLIM3-201ENST00000284767 COX7A2LO14548 114 aa13.02□□□□□ -0.33
PDLIM3-201ENST00000284767 Q9H8V8 135 aa13.02□□□□□ -0.33
PDLIM3-201ENST00000284767 Q6ZTI0 123 aa13.01□□□□□ -0.33
PDLIM3-201ENST00000284767 COX6A2Q02221 97 aa13.01□□□□□ -0.33
PDLIM3-201ENST00000284767 LINC00242Q5T6M2 205 aa13□□□□□ -0.33
PDLIM3-201ENST00000284767 CMC4P56277 68 aaPredicted RBP12.99□□□□□ -0.33
PDLIM3-201ENST00000284767 SHISA2Q6UWI4 295 aa12.99□□□□□ -0.33
PDLIM3-201ENST00000284767 IL17DQ8TAD2 202 aa12.99□□□□□ -0.33
PDLIM3-201ENST00000284767 FAM110AQ9BQ89 295 aa12.99□□□□□ -0.33
PDLIM3-201ENST00000284767 NOP10Q9NPE3 64 aaKnown RBP12.99□□□□□ -0.33
PDLIM3-201ENST00000284767 CSNK1G2-AS1Q8NCQ2 148 aa12.98□□□□□ -0.33
PDLIM3-201ENST00000284767 CSDC2Q9Y534 153 aaKnown RBP12.98□□□□□ -0.33
PDLIM3-201ENST00000284767 PPDPFQ9H3Y8 114 aa12.97□□□□□ -0.33
PDLIM3-201ENST00000284767 SMIM1B2RUZ4 78 aa12.97□□□□□ -0.33
PDLIM3-201ENST00000284767 IMUPQ9GZP8 106 aa12.97□□□□□ -0.33
PDLIM3-201ENST00000284767 PLAC8L1A1L4L8 177 aa12.96□□□□□ -0.33
PDLIM3-201ENST00000284767 TRACP01848 142 aa12.96□□□□□ -0.33
PDLIM3-201ENST00000284767 SOSTDC1Q6X4U4 206 aa12.95□□□□□ -0.34
PDLIM3-201ENST00000284767 ZNF625Q96I27 306 aaPredicted RBP12.95□□□□□ -0.34
PDLIM3-201ENST00000284767 HERV-K104P63124 156 aa12.94□□□□□ -0.34
PDLIM3-201ENST00000284767 PRIMA1Q86XR5 153 aa12.94□□□□□ -0.34
PDLIM3-201ENST00000284767 MEIG1Q5JSS6 88 aa12.93□□□□□ -0.34
PDLIM3-201ENST00000284767 LINC00694P0DN24 101 aa12.93□□□□□ -0.34
PDLIM3-201ENST00000284767 FBN1P35555 2871 aaKnown RBP12.93□□□□□ -0.34
PDLIM3-201ENST00000284767 TRBV10-1A0A0K0K1A3 114 aa12.92□□□□□ -0.34
PDLIM3-201ENST00000284767 A0A0U1RRA0 63 aa12.92□□□□□ -0.34
PDLIM3-201ENST00000284767 RPL36AP83881 106 aaKnown RBP12.92□□□□□ -0.34
PDLIM3-201ENST00000284767 DAZ2Q13117 558 aaKnown RBP12.92□□□□□ -0.34
PDLIM3-201ENST00000284767 DAZ4Q86SG3 579 aaKnown RBP12.92□□□□□ -0.34
PDLIM3-201ENST00000284767 RPL36ALQ969Q0 106 aaKnown RBP12.92□□□□□ -0.34
PDLIM3-201ENST00000284767 DAZ3Q9NR90 486 aaKnown RBP12.92□□□□□ -0.34
PDLIM3-201ENST00000284767 F5H768 121 aa12.91□□□□□ -0.34
PDLIM3-201ENST00000284767 C9orf66Q5T8R8 295 aa12.91□□□□□ -0.34
PDLIM3-201ENST00000284767 CHCHD5Q9BSY4 110 aa12.91□□□□□ -0.34
PDLIM3-201ENST00000284767 TRAV13-1A0A0B4J241 112 aa12.9□□□□□ -0.34
PDLIM3-201ENST00000284767 CYSRT1A8MQ03 144 aa12.9□□□□□ -0.34
PDLIM3-201ENST00000284767 LINC00643Q86TS7 51 aa12.9□□□□□ -0.34
PDLIM3-201ENST00000284767 C16orf74Q96GX8 76 aa12.9□□□□□ -0.34
PDLIM3-201ENST00000284767 BAHCC1Q9P281 2608 aa12.9□□□□□ -0.34
PDLIM3-201ENST00000284767 FAM222AQ5U5X8 452 aa12.9□□□□□ -0.34
PDLIM3-201ENST00000284767 K7EQD1 137 aa12.89□□□□□ -0.35
PDLIM3-201ENST00000284767 CDC42SE2Q9NRR3 84 aa12.89□□□□□ -0.35
PDLIM3-201ENST00000284767 STAB1Q9NY15 2570 aa12.89□□□□□ -0.35
PDLIM3-201ENST00000284767 BAALC-AS2P0C853 105 aa12.89□□□□□ -0.35
PDLIM3-201ENST00000284767 TRGV2A0A075B6R0 118 aa12.88□□□□□ -0.35
PDLIM3-201ENST00000284767 SDIM1Q6ZPB5 146 aa12.88□□□□□ -0.35
PDLIM3-201ENST00000284767 NTM-AS1Q6ZSK4 140 aa12.88□□□□□ -0.35
PDLIM3-201ENST00000284767 SMCR5Q8TEV8 140 aa12.86□□□□□ -0.35
PDLIM3-201ENST00000284767 TRAV13-2A0A0B4J235 113 aa12.86□□□□□ -0.35
PDLIM3-201ENST00000284767 LOC100131303A0A0U1RQF7 123 aa12.86□□□□□ -0.35
PDLIM3-201ENST00000284767 FAM236AA0A1B0GUQ0 79 aa12.86□□□□□ -0.35
PDLIM3-201ENST00000284767 FAM236BA0A1B0GV22 79 aa12.86□□□□□ -0.35
PDLIM3-201ENST00000284767 INAFM2P0DMQ5 153 aa12.86□□□□□ -0.35
PDLIM3-201ENST00000284767 RPL28P46779 137 aaKnown RBP12.85□□□□□ -0.35
PDLIM3-201ENST00000284767 FAM218AQ96MZ4 157 aa12.85□□□□□ -0.35
PDLIM3-201ENST00000284767 C22orf24Q9Y442 160 aa12.85□□□□□ -0.35
PDLIM3-201ENST00000284767 TMEM126AQ9H061 195 aa12.84□□□□□ -0.35
PDLIM3-201ENST00000284767 PKD1L1Q8TDX9 2849 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms