RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 BRI3O95415 125 aa13.65□□□□□ -0.22
SMARCC1-201ENST00000254480 MYO9AB2RTY4 2548 aa13.65□□□□□ -0.22
SMARCC1-201ENST00000254480 CD164L2Q6UWJ8 174 aa13.65□□□□□ -0.22
SMARCC1-201ENST00000254480 USP17L23D6RBM5 183 aa13.65□□□□□ -0.22
SMARCC1-201ENST00000254480 SPTSSBQ8NFR3 76 aa13.65□□□□□ -0.22
SMARCC1-201ENST00000254480 KLLNB2CW77 178 aa13.65□□□□□ -0.22
SMARCC1-201ENST00000254480 WFDC13Q8IUB5 93 aa13.64□□□□□ -0.23
SMARCC1-201ENST00000254480 CRIP2P52943 208 aaPredicted RBP13.64□□□□□ -0.23
SMARCC1-201ENST00000254480 CENPFP49454 3210 aa13.64□□□□□ -0.23
SMARCC1-201ENST00000254480 MRPS12O15235 138 aaKnown RBP13.64□□□□□ -0.23
SMARCC1-201ENST00000254480 C7orf33Q8WU49 177 aa13.64□□□□□ -0.23
SMARCC1-201ENST00000254480 JMJD1CQ15652 2540 aa13.63□□□□□ -0.23
SMARCC1-201ENST00000254480 NDUFV3P56181 108 aaKnown RBP13.63□□□□□ -0.23
SMARCC1-201ENST00000254480 LELP1Q5T871 98 aa13.62□□□□□ -0.23
SMARCC1-201ENST00000254480 PRR4Q16378 134 aa13.62□□□□□ -0.23
SMARCC1-201ENST00000254480 SMIM11BQ8TCY0 68 aa13.61□□□□□ -0.23
SMARCC1-201ENST00000254480 C9orf116Q5BN46 136 aaPredicted RBP13.61□□□□□ -0.23
SMARCC1-201ENST00000254480 IGLV4-69A0A075B6H9 119 aa13.61□□□□□ -0.23
SMARCC1-201ENST00000254480 POM121L12Q8N7R1 296 aa13.61□□□□□ -0.23
SMARCC1-201ENST00000254480 UBE2D1P51668 147 aa13.6□□□□□ -0.23
SMARCC1-201ENST00000254480 YPEL4Q96NS1 127 aa13.6□□□□□ -0.23
SMARCC1-201ENST00000254480 A0A1W2PPR1 153 aa13.6□□□□□ -0.23
SMARCC1-201ENST00000254480 C3orf22Q8N5N4 141 aa13.59□□□□□ -0.23
SMARCC1-201ENST00000254480 PYGO1Q9Y3Y4 419 aa13.59□□□□□ -0.23
SMARCC1-201ENST00000254480 EXPH5Q8NEV8 1989 aa13.59□□□□□ -0.23
SMARCC1-201ENST00000254480 RAI1Q7Z5J4 1906 aaPredicted RBP13.59□□□□□ -0.23
SMARCC1-201ENST00000254480 ODF3L2Q3SX64 289 aa13.59□□□□□ -0.23
SMARCC1-201ENST00000254480 TRBV30A0A0K0K1B3 111 aa13.59□□□□□ -0.23
SMARCC1-201ENST00000254480 SNURFQ9Y675 71 aa13.58□□□□□ -0.23
SMARCC1-201ENST00000254480 KIR2DL5BQ8NHK3 375 aa13.58□□□□□ -0.24
SMARCC1-201ENST00000254480 POLR2KP53803 58 aaKnown RBP13.58□□□□□ -0.24
SMARCC1-201ENST00000254480 NDUFC2O95298 119 aa13.57□□□□□ -0.24
SMARCC1-201ENST00000254480 C2orf91Q6ZV80 131 aa13.57□□□□□ -0.24
SMARCC1-201ENST00000254480 MUC22E2RYF6 1773 aaPredicted RBP13.57□□□□□ -0.24
SMARCC1-201ENST00000254480 CYSRT1A8MQ03 144 aa13.57□□□□□ -0.24
SMARCC1-201ENST00000254480 MRGPRG-AS1Q2M3A8 158 aa13.56□□□□□ -0.24
SMARCC1-201ENST00000254480 PLAC8L1A1L4L8 177 aa13.55□□□□□ -0.24
SMARCC1-201ENST00000254480 M0R378 163 aa13.55□□□□□ -0.24
SMARCC1-201ENST00000254480 PRR3P79522 188 aaKnown RBP13.55□□□□□ -0.24
SMARCC1-201ENST00000254480 UNQ6190/PRO20217Q6UXQ8 127 aa13.55□□□□□ -0.24
SMARCC1-201ENST00000254480 UBE2D3P61077 147 aa13.54□□□□□ -0.24
SMARCC1-201ENST00000254480 UBE2D2P62837 147 aa13.54□□□□□ -0.24
SMARCC1-201ENST00000254480 CDC42SE2Q9NRR3 84 aa13.54□□□□□ -0.24
SMARCC1-201ENST00000254480 TLN1Q9Y490 2541 aaKnown RBP13.54□□□□□ -0.24
SMARCC1-201ENST00000254480 ATG2AQ2TAZ0 1938 aa13.53□□□□□ -0.24
SMARCC1-201ENST00000254480 LOC107984640A0A0U1RRK4 108 aa13.52□□□□□ -0.24
SMARCC1-201ENST00000254480 COX6A2Q02221 97 aa13.52□□□□□ -0.25
SMARCC1-201ENST00000254480 PTPRSQ13332 1948 aa13.51□□□□□ -0.25
SMARCC1-201ENST00000254480 ZFYVE26Q68DK2 2539 aa13.51□□□□□ -0.25
SMARCC1-201ENST00000254480 ZNF73O43830 326 aaPredicted RBP13.51□□□□□ -0.25
SMARCC1-201ENST00000254480 LINC00694P0DN24 101 aa13.51□□□□□ -0.25
SMARCC1-201ENST00000254480 TLN2Q9Y4G6 2542 aa13.5□□□□□ -0.25
SMARCC1-201ENST00000254480 IGLV4-60A0A075B6I1 120 aa13.5□□□□□ -0.25
SMARCC1-201ENST00000254480 Q6ZTC4 211 aa13.5□□□□□ -0.25
SMARCC1-201ENST00000254480 FAM30AQ9NZY2 134 aa13.49□□□□□ -0.25
SMARCC1-201ENST00000254480 FAM236DA0A1B0GTK5 79 aa13.49□□□□□ -0.25
SMARCC1-201ENST00000254480 FAM236CP0DP71 79 aa13.49□□□□□ -0.25
SMARCC1-201ENST00000254480 LINC00242Q5T6M2 205 aa13.48□□□□□ -0.25
SMARCC1-201ENST00000254480 ZNF580Q9UK33 172 aa13.48□□□□□ -0.25
SMARCC1-201ENST00000254480 MRPS36P82909 103 aaKnown RBP13.48□□□□□ -0.25
SMARCC1-201ENST00000254480 EML5Q05BV3 1969 aa13.48□□□□□ -0.25
SMARCC1-201ENST00000254480 LRP4O75096 1905 aa13.47□□□□□ -0.25
SMARCC1-201ENST00000254480 C6orf223Q8N319 242 aa13.47□□□□□ -0.25
SMARCC1-201ENST00000254480 DHRS4-AS1Q9P1J3 65 aa13.47□□□□□ -0.25
SMARCC1-201ENST00000254480 A0A0U1RQV1 116 aa13.46□□□□□ -0.25
SMARCC1-201ENST00000254480 ABCA12Q86UK0 2595 aa13.46□□□□□ -0.25
SMARCC1-201ENST00000254480 LST1O00453 97 aa13.46□□□□□ -0.25
SMARCC1-201ENST00000254480 UQCRQO14949 82 aa13.46□□□□□ -0.25
SMARCC1-201ENST00000254480 IGIPA6NJ69 53 aa13.46□□□□□ -0.26
SMARCC1-201ENST00000254480 M0QXV9 152 aa13.45□□□□□ -0.26
SMARCC1-201ENST00000254480 TIMM17BO60830 172 aa13.45□□□□□ -0.26
SMARCC1-201ENST00000254480 CELA1Q9UNI1 258 aa13.45□□□□□ -0.26
SMARCC1-201ENST00000254480 Q8IZM0 81 aa13.44□□□□□ -0.26
SMARCC1-201ENST00000254480 Q6ZSN1 163 aa13.44□□□□□ -0.26
SMARCC1-201ENST00000254480 URB1-AS1Q96HZ7 61 aa13.44□□□□□ -0.26
SMARCC1-201ENST00000254480 SETD2Q9BYW2 2564 aaPredicted RBP13.43□□□□□ -0.26
SMARCC1-201ENST00000254480 IGLV1-51P01701 117 aa13.43□□□□□ -0.26
SMARCC1-201ENST00000254480 RETNLBQ9BQ08 111 aa13.43□□□□□ -0.26
SMARCC1-201ENST00000254480 CIRBP-AS1Q8TBR5 109 aa13.42□□□□□ -0.26
SMARCC1-201ENST00000254480 TET2Q6N021 2002 aaPredicted RBP13.42□□□□□ -0.26
SMARCC1-201ENST00000254480 FN1P02751 2386 aaKnown RBP13.42□□□□□ -0.26
SMARCC1-201ENST00000254480 CHCHD7Q9BUK0 85 aa13.42□□□□□ -0.26
SMARCC1-201ENST00000254480 TRBV10-3A0A0K0K1G6 114 aa13.41□□□□□ -0.26
SMARCC1-201ENST00000254480 LINC00310P59036 64 aa13.41□□□□□ -0.26
SMARCC1-201ENST00000254480 TSPEAR-AS2P59090 65 aa13.41□□□□□ -0.26
SMARCC1-201ENST00000254480 ATP5EP2Q5VTU8 51 aa13.4□□□□□ -0.26
SMARCC1-201ENST00000254480 SMIM1B2RUZ4 78 aa13.4□□□□□ -0.26
SMARCC1-201ENST00000254480 ZNF706Q9Y5V0 76 aaPredicted RBP13.4□□□□□ -0.26
SMARCC1-201ENST00000254480 FHL2Q14192 279 aa13.4□□□□□ -0.26
SMARCC1-201ENST00000254480 COX17Q14061 63 aa13.38□□□□□ -0.27
SMARCC1-201ENST00000254480 FAM19A3Q7Z5A8 133 aa13.38□□□□□ -0.27
SMARCC1-201ENST00000254480 CNFNQ9BYD5 112 aa13.38□□□□□ -0.27
SMARCC1-201ENST00000254480 A0A087WYN8 130 aa13.37□□□□□ -0.27
SMARCC1-201ENST00000254480 AGRNO00468 2067 aa13.37□□□□□ -0.27
SMARCC1-201ENST00000254480 ADAMTSL4-AS1Q5T5F5 129 aa13.36□□□□□ -0.27
SMARCC1-201ENST00000254480 C10orf142B7Z368 130 aa13.36□□□□□ -0.27
SMARCC1-201ENST00000254480 XGP55808 180 aa13.36□□□□□ -0.27
SMARCC1-201ENST00000254480 MUC4Q99102 2169 aa13.35□□□□□ -0.27
SMARCC1-201ENST00000254480 CCDC179H3BU77 68 aa13.35□□□□□ -0.27
SMARCC1-201ENST00000254480 C10orf25Q5T742 122 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 114.6 ms