RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 A4D1N5 150 aa6.11□□□□□ -1.43
VPS4B-201ENST00000238497 LY6G6CO95867 125 aa6.11□□□□□ -1.43
VPS4B-201ENST00000238497 ETDBQ3ZM63 59 aa6.11□□□□□ -1.43
VPS4B-201ENST00000238497 TMEM101Q96IK0 257 aa6.11□□□□□ -1.43
VPS4B-201ENST00000238497 UBE2D4Q9Y2X8 147 aa6.11□□□□□ -1.43
VPS4B-201ENST00000238497 NANOS2P60321 138 aaKnown RBP6.1□□□□□ -1.43
VPS4B-201ENST00000238497 COX6A2Q02221 97 aa6.1□□□□□ -1.43
VPS4B-201ENST00000238497 WFDC2Q14508 124 aa6.1□□□□□ -1.43
VPS4B-201ENST00000238497 C5orf38Q86SI9 138 aa6.1□□□□□ -1.43
VPS4B-201ENST00000238497 K7EP34 96 aa6.1□□□□□ -1.43
VPS4B-201ENST00000238497 GYPEP15421 78 aa6.1□□□□□ -1.43
VPS4B-201ENST00000238497 C11orf45Q8TAV5 145 aa6.1□□□□□ -1.43
VPS4B-201ENST00000238497 C16orf74Q96GX8 76 aa6.1□□□□□ -1.43
VPS4B-201ENST00000238497 RYR3Q15413 4870 aa6.1□□□□□ -1.43
VPS4B-201ENST00000238497 IGLV10-54A0A075B6I4 117 aa6.1□□□□□ -1.43
VPS4B-201ENST00000238497 A0A1B0GWB2 263 aa6.1□□□□□ -1.43
VPS4B-201ENST00000238497 F5H768 121 aa6.1□□□□□ -1.43
VPS4B-201ENST00000238497 TMEM243Q9BU79 118 aa6.1□□□□□ -1.43
VPS4B-201ENST00000238497 TMEM223A0PJW6 202 aa6.09□□□□□ -1.43
VPS4B-201ENST00000238497 FAM222AQ5U5X8 452 aa6.09□□□□□ -1.43
VPS4B-201ENST00000238497 NTM-AS1Q6ZSK4 140 aa6.09□□□□□ -1.43
VPS4B-201ENST00000238497 TM2D2Q9BX73 214 aa6.09□□□□□ -1.43
VPS4B-201ENST00000238497 TRAV26-1A0A087WT03 109 aa6.09□□□□□ -1.44
VPS4B-201ENST00000238497 TRAV4A0A0B4J268 109 aa6.09□□□□□ -1.44
VPS4B-201ENST00000238497 RPL32P62910 135 aaKnown RBP6.09□□□□□ -1.44
VPS4B-201ENST00000238497 Q9H8V8 135 aa6.09□□□□□ -1.44
VPS4B-201ENST00000238497 KLK5Q9Y337 293 aaPredicted RBP6.09□□□□□ -1.44
VPS4B-201ENST00000238497 STARD9Q9P2P6 4700 aa6.08□□□□□ -1.44
VPS4B-201ENST00000238497 LCE6AA0A183 80 aa6.08□□□□□ -1.44
VPS4B-201ENST00000238497 LEPROTO15243 131 aa6.08□□□□□ -1.44
VPS4B-201ENST00000238497 C10orf126Q8N4M7 172 aa6.08□□□□□ -1.44
VPS4B-201ENST00000238497 K7ERU9 68 aa6.08□□□□□ -1.44
VPS4B-201ENST00000238497 XCL1P47992 114 aa6.08□□□□□ -1.44
VPS4B-201ENST00000238497 CRYBA4P53673 196 aa6.08□□□□□ -1.44
VPS4B-201ENST00000238497 PTH2Q96A98 100 aa6.08□□□□□ -1.44
VPS4B-201ENST00000238497 IGHV4-28A0A0C4DH34 117 aa6.07□□□□□ -1.44
VPS4B-201ENST00000238497 PFN2P35080 140 aa6.07□□□□□ -1.44
VPS4B-201ENST00000238497 NFE4Q86UQ8 179 aa6.07□□□□□ -1.44
VPS4B-201ENST00000238497 SPANXA1Q9NS26 97 aa6.07□□□□□ -1.44
VPS4B-201ENST00000238497 A0A0J9YXY3 114 aa6.07□□□□□ -1.44
VPS4B-201ENST00000238497 NUPR2A6NF83 97 aa6.07□□□□□ -1.44
VPS4B-201ENST00000238497 UFSP1Q6NVU6 142 aa6.07□□□□□ -1.44
VPS4B-201ENST00000238497 PAX4O43316 350 aa6.07□□□□□ -1.44
VPS4B-201ENST00000238497 DAD1P61803 113 aa6.07□□□□□ -1.44
VPS4B-201ENST00000238497 ADAMTSL4-AS1Q5T5F5 129 aa6.07□□□□□ -1.44
VPS4B-201ENST00000238497 IGLV4-60A0A075B6I1 120 aa6.06□□□□□ -1.44
VPS4B-201ENST00000238497 TEX48A0A1B0GUV7 120 aa6.06□□□□□ -1.44
VPS4B-201ENST00000238497 CFC1BP0CG36 223 aa6.06□□□□□ -1.44
VPS4B-201ENST00000238497 CFC1P0CG37 223 aa6.06□□□□□ -1.44
VPS4B-201ENST00000238497 SMAGPQ0VAQ4 97 aa6.06□□□□□ -1.44
VPS4B-201ENST00000238497 DNAJC30Q96LL9 226 aa6.06□□□□□ -1.44
VPS4B-201ENST00000238497 IGHV1-58A0A0C4DH39 117 aa6.06□□□□□ -1.44
VPS4B-201ENST00000238497 VSIG2Q96IQ7 327 aa6.06□□□□□ -1.44
VPS4B-201ENST00000238497 ERG28Q9UKR5 140 aa6.06□□□□□ -1.44
VPS4B-201ENST00000238497 TSPAN13O95857 204 aa6.05□□□□□ -1.44
VPS4B-201ENST00000238497 DAZ2Q13117 558 aaKnown RBP6.05□□□□□ -1.44
VPS4B-201ENST00000238497 TAL2Q16559 108 aa6.05□□□□□ -1.44
VPS4B-201ENST00000238497 DAZ4Q86SG3 579 aaKnown RBP6.05□□□□□ -1.44
VPS4B-201ENST00000238497 DAZ3Q9NR90 486 aaKnown RBP6.05□□□□□ -1.44
VPS4B-201ENST00000238497 PRO1854Q9UHT4 67 aa6.05□□□□□ -1.44
VPS4B-201ENST00000238497 DNAH7Q8WXX0 4024 aa6.05□□□□□ -1.44
VPS4B-201ENST00000238497 A0A1B0GV72 72 aa6.05□□□□□ -1.44
VPS4B-201ENST00000238497 A8MTW9 85 aa6.05□□□□□ -1.44
VPS4B-201ENST00000238497 IGHV3-30P01768 117 aa6.05□□□□□ -1.44
VPS4B-201ENST00000238497 IGHV3-30-5P0DP03 117 aa6.05□□□□□ -1.44
VPS4B-201ENST00000238497 UBE2D3P61077 147 aa6.05□□□□□ -1.44
VPS4B-201ENST00000238497 UBE2D2P62837 147 aa6.05□□□□□ -1.44
VPS4B-201ENST00000238497 ATP6V0E2Q8NHE4 81 aa6.05□□□□□ -1.44
VPS4B-201ENST00000238497 LINC00158P58513 81 aa6.05□□□□□ -1.44
VPS4B-201ENST00000238497 CIRBPQ14011 172 aaKnown RBP6.05□□□□□ -1.44
VPS4B-201ENST00000238497 LINC00242Q5T6M2 205 aa6.05□□□□□ -1.44
VPS4B-201ENST00000238497 Q8N3U1 123 aa6.05□□□□□ -1.44
VPS4B-201ENST00000238497 GTSF1LQ9H1H1 148 aa6.05□□□□□ -1.44
VPS4B-201ENST00000238497 CSMD3Q7Z407 3707 aa6.05□□□□□ -1.44
VPS4B-201ENST00000238497 SACSQ9NZJ4 4579 aa6.05□□□□□ -1.44
VPS4B-201ENST00000238497 PLAC8L1A1L4L8 177 aa6.04□□□□□ -1.44
VPS4B-201ENST00000238497 EIF4EBP3O60516 100 aaPredicted RBP6.04□□□□□ -1.44
VPS4B-201ENST00000238497 UBE2D1P51668 147 aa6.04□□□□□ -1.44
VPS4B-201ENST00000238497 MRPS36P82909 103 aaKnown RBP6.04□□□□□ -1.44
VPS4B-201ENST00000238497 FHL2Q14192 279 aa6.04□□□□□ -1.44
VPS4B-201ENST00000238497 AMELXQ99217 191 aa6.04□□□□□ -1.44
VPS4B-201ENST00000238497 PYGO1Q9Y3Y4 419 aa6.04□□□□□ -1.44
VPS4B-201ENST00000238497 MIFP14174 115 aa6.04□□□□□ -1.44
VPS4B-201ENST00000238497 FAM104AQ969W3 186 aa6.04□□□□□ -1.44
VPS4B-201ENST00000238497 ANGP03950 147 aaKnown RBP6.04□□□□□ -1.44
VPS4B-201ENST00000238497 Q6ZTC4 211 aa6.04□□□□□ -1.44
VPS4B-201ENST00000238497 CSNK1G2-AS1Q8NCQ2 148 aa6.04□□□□□ -1.44
VPS4B-201ENST00000238497 TRBV10-1A0A0K0K1A3 114 aa6.03□□□□□ -1.44
VPS4B-201ENST00000238497 TINCRA0A1B0GVN0 87 aa6.03□□□□□ -1.44
VPS4B-201ENST00000238497 HERV-K104P63124 156 aa6.03□□□□□ -1.44
VPS4B-201ENST00000238497 C9JAW5 83 aa6.03□□□□□ -1.44
VPS4B-201ENST00000238497 HERVK_113P63121 156 aa6.03□□□□□ -1.44
VPS4B-201ENST00000238497 C6orf226Q5I0X4 101 aa6.03□□□□□ -1.44
VPS4B-201ENST00000238497 PIK3CD-AS1Q5SR53 167 aa6.03□□□□□ -1.44
VPS4B-201ENST00000238497 Q8NAQ8 132 aa6.03□□□□□ -1.44
VPS4B-201ENST00000238497 LINC00526Q96FQ7 95 aa6.03□□□□□ -1.44
VPS4B-201ENST00000238497 CDC42SE2Q9NRR3 84 aa6.03□□□□□ -1.44
VPS4B-201ENST00000238497 X6R8D5 127 aa6.03□□□□□ -1.44
VPS4B-201ENST00000238497 TRBV6-8A0A0A6YYG3 113 aa6.02□□□□□ -1.45
VPS4B-201ENST00000238497 OR13C6PQ8NH95 151 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms