RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 CCDC168Q8NDH2 2452 aa8.8□□□□□ -1
NUP88-201ENST00000225696 LOC100131303A0A0U1RQF7 123 aa8.8□□□□□ -1
NUP88-201ENST00000225696 IL17DQ8TAD2 202 aa8.8□□□□□ -1
NUP88-201ENST00000225696 C9orf129Q5T035 196 aaKnown RBP8.79□□□□□ -1
NUP88-201ENST00000225696 FAM19A3Q7Z5A8 133 aa8.79□□□□□ -1
NUP88-201ENST00000225696 PEMTQ9UBM1 199 aa8.79□□□□□ -1
NUP88-201ENST00000225696 CR1P17927 2039 aa8.79□□□□□ -1
NUP88-201ENST00000225696 K7EQD1 137 aa8.79□□□□□ -1
NUP88-201ENST00000225696 PLA2G2AP14555 144 aa8.79□□□□□ -1
NUP88-201ENST00000225696 LINC00337Q8N6G1 96 aa8.79□□□□□ -1
NUP88-201ENST00000225696 NBEAL2Q6ZNJ1 2754 aa8.78□□□□□ -1
NUP88-201ENST00000225696 C4orf3Q8WVX3 66 aa8.78□□□□□ -1
NUP88-201ENST00000225696 IGKV2-28A0A075B6P5 120 aa8.78□□□□□ -1
NUP88-201ENST00000225696 IGKV3OR2-268A0A0C4DH90 116 aa8.78□□□□□ -1
NUP88-201ENST00000225696 J3QLI3 93 aa8.78□□□□□ -1
NUP88-201ENST00000225696 IGKV2D-28P01615 120 aa8.78□□□□□ -1
NUP88-201ENST00000225696 IGHV4-31P0DP07 118 aa8.78□□□□□ -1
NUP88-201ENST00000225696 DSCR9P59020 149 aa8.78□□□□□ -1
NUP88-201ENST00000225696 RPL36AP83881 106 aaKnown RBP8.78□□□□□ -1
NUP88-201ENST00000225696 RPL36ALQ969Q0 106 aaKnown RBP8.78□□□□□ -1
NUP88-201ENST00000225696 CSDC2Q9Y534 153 aaKnown RBP8.78□□□□□ -1
NUP88-201ENST00000225696 APCP25054 2843 aa8.77□□□□□ -1.01
NUP88-201ENST00000225696 NOP10Q9NPE3 64 aaKnown RBP8.77□□□□□ -1.01
NUP88-201ENST00000225696 A0A1W2PRX2 142 aa8.76□□□□□ -1.01
NUP88-201ENST00000225696 TRACP01848 142 aa8.76□□□□□ -1.01
NUP88-201ENST00000225696 STHQ8IWL8 128 aa8.76□□□□□ -1.01
NUP88-201ENST00000225696 MIR7-3HGQ8N6C7 128 aa8.76□□□□□ -1.01
NUP88-201ENST00000225696 ITPR3Q14573 2671 aa8.76□□□□□ -1.01
NUP88-201ENST00000225696 FN1P02751 2386 aaKnown RBP8.76□□□□□ -1.01
NUP88-201ENST00000225696 KRTAP10-9P60411 292 aa8.76□□□□□ -1.01
NUP88-201ENST00000225696 SDIM1Q6ZPB5 146 aa8.76□□□□□ -1.01
NUP88-201ENST00000225696 A0A087WYN8 130 aa8.75□□□□□ -1.01
NUP88-201ENST00000225696 HIST2H2BCQ6DN03 193 aa8.75□□□□□ -1.01
NUP88-201ENST00000225696 WFDC10AQ9H1F0 79 aa8.75□□□□□ -1.01
NUP88-201ENST00000225696 TOMM7Q9P0U1 55 aa8.75□□□□□ -1.01
NUP88-201ENST00000225696 ACYP1P07311 99 aa8.75□□□□□ -1.01
NUP88-201ENST00000225696 GIG44P09565 113 aaPredicted RBP8.75□□□□□ -1.01
NUP88-201ENST00000225696 HERV-K104P63124 156 aa8.75□□□□□ -1.01
NUP88-201ENST00000225696 GAGE2AQ6NT46 116 aa8.75□□□□□ -1.01
NUP88-201ENST00000225696 LINC00643Q86TS7 51 aa8.74□□□□□ -1.01
NUP88-201ENST00000225696 GCN1Q92616 2671 aaKnown RBP8.74□□□□□ -1.01
NUP88-201ENST00000225696 USP24Q9UPU5 2620 aa8.74□□□□□ -1.01
NUP88-201ENST00000225696 IGLV4-60A0A075B6I1 120 aa8.73□□□□□ -1.01
NUP88-201ENST00000225696 TRBV10-1A0A0K0K1A3 114 aa8.73□□□□□ -1.01
NUP88-201ENST00000225696 J3QKU1 62 aa8.73□□□□□ -1.01
NUP88-201ENST00000225696 PLAC8L1A1L4L8 177 aa8.73□□□□□ -1.01
NUP88-201ENST00000225696 RPL28P46779 137 aaKnown RBP8.73□□□□□ -1.01
NUP88-201ENST00000225696 SMIM11BQ8TCY0 68 aa8.73□□□□□ -1.01
NUP88-201ENST00000225696 SND1-IT1Q9HBX3 110 aa8.73□□□□□ -1.01
NUP88-201ENST00000225696 MTORP42345 2549 aa8.72□□□□□ -1.01
NUP88-201ENST00000225696 UBE2L6O14933 153 aa8.72□□□□□ -1.01
NUP88-201ENST00000225696 ATP5G1P05496 136 aa8.72□□□□□ -1.01
NUP88-201ENST00000225696 MALP21145 153 aa8.72□□□□□ -1.01
NUP88-201ENST00000225696 COX7B2Q8TF08 81 aa8.72□□□□□ -1.01
NUP88-201ENST00000225696 TMEM243Q9BU79 118 aa8.72□□□□□ -1.01
NUP88-201ENST00000225696 UBR5O95071 2799 aaPredicted RBP8.72□□□□□ -1.01
NUP88-201ENST00000225696 FLNAP21333 2647 aaKnown RBP8.72□□□□□ -1.01
NUP88-201ENST00000225696 CRPP02741 224 aa8.72□□□□□ -1.01
NUP88-201ENST00000225696 COPS9Q8WXC6 57 aa8.72□□□□□ -1.01
NUP88-201ENST00000225696 IMUPQ9GZP8 106 aa8.72□□□□□ -1.01
NUP88-201ENST00000225696 CCL18P55774 89 aa8.71□□□□□ -1.01
NUP88-201ENST00000225696 FAM110AQ9BQ89 295 aa8.71□□□□□ -1.01
NUP88-201ENST00000225696 LINC00158P58513 81 aa8.71□□□□□ -1.02
NUP88-201ENST00000225696 C14orf132Q9NPU4 83 aa8.71□□□□□ -1.02
NUP88-201ENST00000225696 TRAV13-2A0A0B4J235 113 aa8.7□□□□□ -1.02
NUP88-201ENST00000225696 PFN2P35080 140 aa8.7□□□□□ -1.02
NUP88-201ENST00000225696 FAM222AQ5U5X8 452 aa8.7□□□□□ -1.02
NUP88-201ENST00000225696 ACANP16112 2415 aa8.7□□□□□ -1.02
NUP88-201ENST00000225696 TRGV2A0A075B6R0 118 aa8.69□□□□□ -1.02
NUP88-201ENST00000225696 SLPIP03973 132 aa8.69□□□□□ -1.02
NUP88-201ENST00000225696 C5orf38Q86SI9 138 aa8.69□□□□□ -1.02
NUP88-201ENST00000225696 IGHV3OR16-9A0A0B4J2B5 98 aa8.69□□□□□ -1.02
NUP88-201ENST00000225696 C11orf68Q9H3H3 251 aaKnown RBP8.69□□□□□ -1.02
NUP88-201ENST00000225696 KLK5Q9Y337 293 aaPredicted RBP8.69□□□□□ -1.02
NUP88-201ENST00000225696 RPL35AP18077 110 aaKnown RBP8.68□□□□□ -1.02
NUP88-201ENST00000225696 CCL24O00175 119 aa8.67□□□□□ -1.02
NUP88-201ENST00000225696 PF4P02776 101 aa8.67□□□□□ -1.02
NUP88-201ENST00000225696 C3orf22Q8N5N4 141 aa8.67□□□□□ -1.02
NUP88-201ENST00000225696 NCR3O14931 201 aa8.66□□□□□ -1.02
NUP88-201ENST00000225696 LECT2O14960 151 aa8.66□□□□□ -1.02
NUP88-201ENST00000225696 INAFM2P0DMQ5 153 aa8.66□□□□□ -1.02
NUP88-201ENST00000225696 C9orf153Q5TBE3 101 aa8.66□□□□□ -1.02
NUP88-201ENST00000225696 LRRC75A-AS1Q8N1F1 130 aa8.66□□□□□ -1.02
NUP88-201ENST00000225696 CYSTM1Q9H1C7 97 aa8.66□□□□□ -1.02
NUP88-201ENST00000225696 LINC00846Q9NV44 126 aa8.66□□□□□ -1.02
NUP88-201ENST00000225696 IGKV3D-7A0A0C4DH55 119 aa8.65□□□□□ -1.02
NUP88-201ENST00000225696 C2orf48Q96LS8 159 aa8.65□□□□□ -1.02
NUP88-201ENST00000225696 PPDPFQ9H3Y8 114 aa8.65□□□□□ -1.02
NUP88-201ENST00000225696 TRBV6-8A0A0A6YYG3 113 aa8.65□□□□□ -1.03
NUP88-201ENST00000225696 TRGV4A0A0C4DH28 118 aa8.65□□□□□ -1.03
NUP88-201ENST00000225696 DNAL4O96015 105 aa8.65□□□□□ -1.03
NUP88-201ENST00000225696 VWFP04275 2813 aa8.65□□□□□ -1.03
NUP88-201ENST00000225696 A0A087WVE0 104 aa8.64□□□□□ -1.03
NUP88-201ENST00000225696 TRAV25A0A0B4J276 109 aa8.64□□□□□ -1.03
NUP88-201ENST00000225696 PAX4O43316 350 aa8.64□□□□□ -1.03
NUP88-201ENST00000225696 PRR3P79522 188 aaKnown RBP8.64□□□□□ -1.03
NUP88-201ENST00000225696 FHL2Q14192 279 aa8.64□□□□□ -1.03
NUP88-201ENST00000225696 OR13C6PQ8NH95 151 aa8.64□□□□□ -1.03
NUP88-201ENST00000225696 A0A087WZ39 114 aa8.63□□□□□ -1.03
NUP88-201ENST00000225696 TRBV6-4A0A1B0GX49 114 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms