RNA–Protein interactions for RNA: ENSMUST00000005841.15

Ctcf-201, Transcript of Transcriptional repressor CTCF, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ctcf, Length 3,782 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ctcf-201ENSMUST00000005841 Gm6993A0A1W2P738 69 aa13.56□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Fam240bJ3QMB3 78 aa13.56□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Zc2hc1aQ8BJH1 324 aa13.56□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Ighv3-6P18531 116 aa13.55□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Gm10188Q3V432 135 aa13.55□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Slc17a2Q5SZA1 478 aa13.55□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Fgfrl1Q91V87 529 aa13.55□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Leprotl1Q9CQ74 131 aa13.55□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Tmprss5Q9ER04 455 aa13.55□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Tcf20Q9EPQ8 1987 aa13.55□□□□□ -0.24
Ctcf-201ENSMUST00000005841 CrxO54751 299 aa13.55□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Smim15Q3UTD9 74 aa13.55□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Necap1Q9CR95 275 aa13.55□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Cacna1gQ5SUF7 2381 aa13.55□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Gm12057A0A087WR21 115 aa13.55□□□□□ -0.24
Ctcf-201ENSMUST00000005841 BC107364E9Q5A2 140 aa13.55□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Asphd1Q2TA57 360 aa13.55□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Rnf24Q8BGI1 148 aa13.55□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Them7Q9DCP4 223 aa13.55□□□□□ -0.24
Ctcf-201ENSMUST00000005841 PigpQ9JHG1 132 aa13.55□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Defb3Q9WTL0 63 aa13.55□□□□□ -0.24
Ctcf-201ENSMUST00000005841 IcosQ9WVS0 200 aa13.55□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Cox6a1P43024 111 aa13.54□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Gm7489Q3UT34 171 aa13.54□□□□□ -0.24
Ctcf-201ENSMUST00000005841 9130213A22RikQ3V3T2 120 aa13.54□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Znhit1Q8R331 154 aa13.54□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Dnajb12Q9QYI4 376 aaKnown RBP13.54□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Jmjd1cQ69ZK6 2350 aa13.54□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Ighv2-6A0A075B6A7 116 aa13.54□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Rtl10D3YWW5 146 aa13.54□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Gm16442D3YZG3 307 aa13.54□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Vmn1r1E9PVR6 306 aa13.54□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Olfr824Q8VFU4 315 aa13.54□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Znrf1Q91V17 227 aa13.54□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Rpl13a-ps1A0A140T8K2 203 aaKnown RBP13.54□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Gm765B2RVL9 189 aa13.54□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Gng5Q80SZ7 68 aa13.54□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Rnf114Q9ET26 229 aa13.54□□□□□ -0.24
Ctcf-201ENSMUST00000005841 RelnQ60841 3461 aa13.54□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Gm10190Q8BSD7 107 aa13.53□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Trav13n-4A0A0G2JG01 110 aa13.53□□□□□ -0.24
Ctcf-201ENSMUST00000005841 EnsaP60840 121 aa13.53□□□□□ -0.24
Ctcf-201ENSMUST00000005841 SelplgQ62170 397 aa13.53□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Crip3Q6Q6R3 243 aa13.53□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Josd1Q9DBJ6 202 aa13.53□□□□□ -0.24
Ctcf-201ENSMUST00000005841 SrfQ9JM73 504 aa13.53□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Ube2l3P68037 154 aaKnown RBP13.53□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Loxl1P97873 607 aa13.53□□□□□ -0.24
Ctcf-201ENSMUST00000005841 AsipQ03288 131 aa13.53□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Defa22Q8C1N8 93 aa13.53□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Ammecr1Q9JHT5 344 aaKnown RBP13.53□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Igkv1-131A0A140T8M8 120 aa13.52□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Col8a2P25318 699 aa13.52□□□□□ -0.24
Ctcf-201ENSMUST00000005841 C1qtnf5Q8K479 243 aa13.52□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Olfr975Q8VG91 310 aa13.52□□□□□ -0.24
Ctcf-201ENSMUST00000005841 H2al3Q9D4U4 128 aa13.52□□□□□ -0.24
Ctcf-201ENSMUST00000005841 Ube2d2bQ6ZWY6 147 aa13.52□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Hnrnpa3Q8BG05 379 aaKnown RBP13.52□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Osr1Q9WVG7 266 aa13.52□□□□□ -0.25
Ctcf-201ENSMUST00000005841 TncQ80YX1 2110 aa13.52□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Lbhd2G3UW55 114 aa13.52□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Tmem52bQ0VBF2 186 aa13.52□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Pilrb2Q2YFS1 225 aa13.52□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Olfr1184Q8VG86 311 aa13.52□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Rbms1Q91W59 403 aaKnown RBP13.52□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Zfp119aQ9JIC0 545 aa13.52□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Urb1Q571H0 2274 aaKnown RBP13.52□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Gm15127B1AVZ5 449 aa13.51□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Gm15091B1AZM2 449 aa13.51□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Olfr177E9Q7W1 309 aa13.51□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Flg2Q2VIS4 2362 aa13.51□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Gm21974F6W3F3 119 aa13.51□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Tctex1d2Q9CQ66 144 aa13.51□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Fscn3Q9QXW4 498 aa13.51□□□□□ -0.25
Ctcf-201ENSMUST00000005841 F2rl1P55086 399 aa13.51□□□□□ -0.25
Ctcf-201ENSMUST00000005841 CebpdQ00322 268 aa13.51□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Slc17a9Q8VCL5 447 aa13.51□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Psmb2Q9R1P3 201 aa13.51□□□□□ -0.25
Ctcf-201ENSMUST00000005841 DysfQ9ESD7 2090 aa13.5□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Tcrg-C2A0A075B5Z2 167 aa13.5□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Trav14d-1A0A075B6B1 121 aa13.5□□□□□ -0.25
Ctcf-201ENSMUST00000005841 P01853 167 aa13.5□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Cldn16Q925N4 235 aa13.5□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Ncoa6Q9JL19 2067 aa13.5□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Plcxd2B2RXA1 340 aa13.5□□□□□ -0.25
Ctcf-201ENSMUST00000005841 P01804 111 aa13.5□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Olfr823Q7TRH2 315 aa13.5□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Sec11aQ9R0P6 179 aa13.5□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Arf6P62331 175 aa13.5□□□□□ -0.25
Ctcf-201ENSMUST00000005841 S100a15aQ6S5I3 108 aa13.5□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Rnase2aQ8K196 155 aa13.5□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Mrpl42Q9CPV3 142 aa13.5□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Zcchc10Q9CX48 178 aa13.5□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Q08AU9 97 aa13.49□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Pmis2Q497Q9 96 aa13.49□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Vmn1r195Q5SVD6 316 aa13.49□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Olfr1437Q7TQR7 312 aa13.49□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Ufc1Q9CR09 167 aa13.49□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Gm4565A0A140LJ87 301 aa13.49□□□□□ -0.25
Ctcf-201ENSMUST00000005841 Gm6176J3QK59 301 aa13.49□□□□□ -0.25
Retrieved 100 of 22,080 RNA–protein pairs in 24.2 ms