RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 MT-ND6P03923 174 aa12.07□□□□□ -0.48
CLN3-259ENST00000637551 GNB1LQ9BYB4 327 aa12.07□□□□□ -0.48
CLN3-259ENST00000637551 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.06□□□□□ -0.48
CLN3-259ENST00000637551 IGKV2-29A2NJV5 120 aaPredicted RBP12.06□□□□□ -0.48
CLN3-259ENST00000637551 RNASEKQ6P5S7 137 aaKnown RBP12.06□□□□□ -0.48
CLN3-259ENST00000637551 KRTAP26-1Q6PEX3 210 aa12.06□□□□□ -0.48
CLN3-259ENST00000637551 OR5A1Q8NGJ0 315 aa12.06□□□□□ -0.48
CLN3-259ENST00000637551 MAP1LC3AQ9H492 121 aa12.04□□□□□ -0.48
CLN3-259ENST00000637551 RPS10P5Q9NQ39 176 aa12.04□□□□□ -0.48
CLN3-259ENST00000637551 IGLV5-52A0A0A0MRZ9 124 aa12.03□□□□□ -0.48
CLN3-259ENST00000637551 BAALCQ8WXS3 180 aa12.03□□□□□ -0.48
CLN3-259ENST00000637551 CDC42SE2Q9NRR3 84 aa12.03□□□□□ -0.48
CLN3-259ENST00000637551 SPANXA1Q9NS26 97 aa12.03□□□□□ -0.48
CLN3-259ENST00000637551 UBE2D4Q9Y2X8 147 aa12.03□□□□□ -0.48
CLN3-259ENST00000637551 APOC3P02656 99 aa12.02□□□□□ -0.49
CLN3-259ENST00000637551 RAB5AP20339 215 aa12.02□□□□□ -0.49
CLN3-259ENST00000637551 GCSHP23434 173 aa12.02□□□□□ -0.49
CLN3-259ENST00000637551 DGAT2L7PQ6IED9 249 aa12.02□□□□□ -0.49
CLN3-259ENST00000637551 ZNF664Q8N3J9 261 aa12.02□□□□□ -0.49
CLN3-259ENST00000637551 NXT2Q9NPJ8 142 aaKnown RBP12.02□□□□□ -0.49
CLN3-259ENST00000637551 LRP1BQ9NZR2 4599 aa12.01□□□□□ -0.49
CLN3-259ENST00000637551 NPSP0C0P6 89 aa12.01□□□□□ -0.49
CLN3-259ENST00000637551 G0S2P27469 103 aa12.01□□□□□ -0.49
CLN3-259ENST00000637551 WFDC2Q14508 124 aa12.01□□□□□ -0.49
CLN3-259ENST00000637551 CLPSL2Q6UWE3 100 aa12.01□□□□□ -0.49
CLN3-259ENST00000637551 DEFB104AQ8WTQ1 72 aa12.01□□□□□ -0.49
CLN3-259ENST00000637551 MRPS36P82909 103 aaKnown RBP12□□□□□ -0.49
CLN3-259ENST00000637551 Q8N8P6 123 aa12□□□□□ -0.49
CLN3-259ENST00000637551 DNAH5Q8TE73 4624 aa11.99□□□□□ -0.49
CLN3-259ENST00000637551 LINC01549A6NIU2 74 aa11.99□□□□□ -0.49
CLN3-259ENST00000637551 USP17L23D6RBM5 183 aa11.99□□□□□ -0.49
CLN3-259ENST00000637551 ORMDL2Q53FV1 153 aa11.99□□□□□ -0.49
CLN3-259ENST00000637551 CFAP161Q6P656 301 aa11.99□□□□□ -0.49
CLN3-259ENST00000637551 PYGO1Q9Y3Y4 419 aa11.99□□□□□ -0.49
CLN3-259ENST00000637551 IGLV10-54A0A075B6I4 117 aa11.97□□□□□ -0.49
CLN3-259ENST00000637551 LINC00959A0A1B0GUT2 108 aa11.97□□□□□ -0.49
CLN3-259ENST00000637551 C1orf196B1AJZ1 125 aa11.97□□□□□ -0.49
CLN3-259ENST00000637551 SS18Q15532 418 aa11.97□□□□□ -0.49
CLN3-259ENST00000637551 CHCHD10Q8WYQ3 142 aaPredicted RBP11.97□□□□□ -0.49
CLN3-259ENST00000637551 LECT2O14960 151 aa11.95□□□□□ -0.5
CLN3-259ENST00000637551 CNBPP62633 177 aaKnown RBP11.95□□□□□ -0.5
CLN3-259ENST00000637551 CD164L2Q6UWJ8 174 aa11.95□□□□□ -0.5
CLN3-259ENST00000637551 IFI27P40305 119 aaPredicted RBP11.94□□□□□ -0.5
CLN3-259ENST00000637551 CYSLTR1Q9Y271 337 aa11.94□□□□□ -0.5
CLN3-259ENST00000637551 LINC01546A6NGU7 62 aa11.93□□□□□ -0.5
CLN3-259ENST00000637551 KRTAP10-1P60331 282 aa11.93□□□□□ -0.5
CLN3-259ENST00000637551 Q6ZSA8 131 aa11.93□□□□□ -0.5
CLN3-259ENST00000637551 ALKBH7Q9BT30 221 aaPredicted RBP11.93□□□□□ -0.5
CLN3-259ENST00000637551 GAGE12HA6NDE8 117 aa11.92□□□□□ -0.5
CLN3-259ENST00000637551 PRSS1P07477 247 aa11.92□□□□□ -0.5
CLN3-259ENST00000637551 RPL39P62891 51 aaKnown RBP11.92□□□□□ -0.5
CLN3-259ENST00000637551 FOXI1Q12951 378 aa11.92□□□□□ -0.5
CLN3-259ENST00000637551 APOBP04114 4563 aaKnown RBP11.92□□□□□ -0.5
CLN3-259ENST00000637551 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.91□□□□□ -0.5
CLN3-259ENST00000637551 GVQW2A0A096LPI5 108 aaPredicted RBP11.91□□□□□ -0.5
CLN3-259ENST00000637551 PAPPA-AS1Q5QFB9 102 aa11.91□□□□□ -0.5
CLN3-259ENST00000637551 Q6ZUT4 128 aa11.91□□□□□ -0.5
CLN3-259ENST00000637551 MRPL18Q9H0U6 180 aaKnown RBP11.91□□□□□ -0.5
CLN3-259ENST00000637551 AP5S1Q9NUS5 200 aa11.91□□□□□ -0.5
CLN3-259ENST00000637551 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.9□□□□□ -0.5
CLN3-259ENST00000637551 IGKV3OR2-268A0A0C4DH90 116 aa11.9□□□□□ -0.5
CLN3-259ENST00000637551 LOC389332A0A1B0GUA5 103 aa11.9□□□□□ -0.5
CLN3-259ENST00000637551 Q8N1X5 172 aa11.9□□□□□ -0.5
CLN3-259ENST00000637551 C9orf163Q8N9P6 203 aa11.9□□□□□ -0.5
CLN3-259ENST00000637551 DMBT1Q9UGM3 2413 aaPredicted RBP11.9□□□□□ -0.5
CLN3-259ENST00000637551 IGHV1-58A0A0C4DH39 117 aa11.89□□□□□ -0.51
CLN3-259ENST00000637551 C2orf66Q6UXQ4 117 aa11.89□□□□□ -0.51
CLN3-259ENST00000637551 C15orf56Q8N910 161 aa11.89□□□□□ -0.51
CLN3-259ENST00000637551 FAM104AQ969W3 186 aa11.89□□□□□ -0.51
CLN3-259ENST00000637551 TMEM141Q96I45 108 aa11.89□□□□□ -0.51
CLN3-259ENST00000637551 YPEL4Q96NS1 127 aa11.89□□□□□ -0.51
CLN3-259ENST00000637551 hDV102S1A0JD36 115 aa11.88□□□□□ -0.51
CLN3-259ENST00000637551 XCL1P47992 114 aa11.88□□□□□ -0.51
CLN3-259ENST00000637551 FABP9Q0Z7S8 132 aa11.88□□□□□ -0.51
CLN3-259ENST00000637551 TIMM17AQ99595 171 aa11.88□□□□□ -0.51
CLN3-259ENST00000637551 SMCO4Q9NRQ5 59 aa11.88□□□□□ -0.51
CLN3-259ENST00000637551 PKIGQ9Y2B9 76 aa11.88□□□□□ -0.51
CLN3-259ENST00000637551 TGIF2-C20orf24A0A0A6YYL0 155 aa11.87□□□□□ -0.51
CLN3-259ENST00000637551 KIAA1644Q3SXP7 199 aa11.87□□□□□ -0.51
CLN3-259ENST00000637551 Q6ZN92 141 aa11.87□□□□□ -0.51
CLN3-259ENST00000637551 PRSS3P2Q8NHM4 247 aa11.87□□□□□ -0.51
CLN3-259ENST00000637551 TRAPPC1Q9Y5R8 145 aa11.87□□□□□ -0.51
CLN3-259ENST00000637551 IGLV4-3A0A075B6K6 122 aa11.86□□□□□ -0.51
CLN3-259ENST00000637551 COX7A2LO14548 114 aa11.86□□□□□ -0.51
CLN3-259ENST00000637551 TOMM6Q96B49 74 aa11.86□□□□□ -0.51
CLN3-259ENST00000637551 TRAV13-1A0A0B4J241 112 aa11.85□□□□□ -0.51
CLN3-259ENST00000637551 IGIPA6NJ69 53 aa11.85□□□□□ -0.51
CLN3-259ENST00000637551 FUSP35637 526 aaKnown RBP eCLIP11.85□□□□□ -0.51
CLN3-259ENST00000637551 XGP55808 180 aa11.85□□□□□ -0.51
CLN3-259ENST00000637551 TEX43Q6ZNM6 134 aa11.85□□□□□ -0.51
CLN3-259ENST00000637551 C2orf88Q9BSF0 95 aa11.85□□□□□ -0.51
CLN3-259ENST00000637551 IFITM10A6NMD0 228 aa11.84□□□□□ -0.51
CLN3-259ENST00000637551 F8WDY8 70 aa11.84□□□□□ -0.51
CLN3-259ENST00000637551 APOMO95445 188 aa11.84□□□□□ -0.51
CLN3-259ENST00000637551 AMELXQ99217 191 aa11.84□□□□□ -0.51
CLN3-259ENST00000637551 IGHV3OR16-9A0A0B4J2B5 98 aa11.83□□□□□ -0.52
CLN3-259ENST00000637551 ERASQ7Z444 233 aa11.83□□□□□ -0.52
CLN3-259ENST00000637551 FAM19A3Q7Z5A8 133 aa11.83□□□□□ -0.52
CLN3-259ENST00000637551 LINC01561Q8N1V8 128 aa11.83□□□□□ -0.52
CLN3-259ENST00000637551 RAB5BP61020 215 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms