RNA–Protein interactions for RNA: ENST00000636674.1

CLN6-215, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 2,005 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-215	ENST00000636674	RNASE13	Q5GAN3	156 aa	Known RBP	10.53	□□□□□ -0.72
CLN6-215	ENST00000636674	TMEM61	Q8N0U2	210 aa		10.53	□□□□□ -0.72
CLN6-215	ENST00000636674	GEMIN7	Q9H840	131 aa	Known RBP	10.53	□□□□□ -0.72
CLN6-215	ENST00000636674		Q9UF83	564 aa		10.53	□□□□□ -0.72
CLN6-215	ENST00000636674	ICOS	Q9Y6W8	199 aa		10.53	□□□□□ -0.72
CLN6-215	ENST00000636674	CLUHP3	Q96NS8	147 aa		10.53	□□□□□ -0.72
CLN6-215	ENST00000636674	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	10.52	□□□□□ -0.73
CLN6-215	ENST00000636674	IGKV2-29	A2NJV5	120 aa	Predicted RBP	10.52	□□□□□ -0.73
CLN6-215	ENST00000636674	NTN5	Q8WTR8	489 aa	Predicted RBP	10.52	□□□□□ -0.73
CLN6-215	ENST00000636674	CITED1	Q99966	193 aa		10.52	□□□□□ -0.73
CLN6-215	ENST00000636674	NDUFA1	O15239	70 aa		10.51	□□□□□ -0.73
CLN6-215	ENST00000636674	INS	P01308	110 aa		10.51	□□□□□ -0.73
CLN6-215	ENST00000636674	PRSS2	P07478	247 aa		10.51	□□□□□ -0.73
CLN6-215	ENST00000636674	DEFB136	Q30KP8	78 aa		10.51	□□□□□ -0.73
CLN6-215	ENST00000636674	C18orf65	Q6ZTR6	163 aa		10.51	□□□□□ -0.73
CLN6-215	ENST00000636674	C4orf3	Q8WVX3	66 aa		10.51	□□□□□ -0.73
CLN6-215	ENST00000636674		H3BT86	120 aa		10.51	□□□□□ -0.73
CLN6-215	ENST00000636674	PRM2	P04554	102 aa		10.5	□□□□□ -0.73
CLN6-215	ENST00000636674	COX6C	P09669	75 aa		10.5	□□□□□ -0.73
CLN6-215	ENST00000636674	FAM19A3	Q7Z5A8	133 aa		10.5	□□□□□ -0.73
CLN6-215	ENST00000636674	IGHV4-31	P0DP07	118 aa		10.5	□□□□□ -0.73
CLN6-215	ENST00000636674	LINC01587	Q99440	93 aa		10.5	□□□□□ -0.73
CLN6-215	ENST00000636674		A8MZ25	164 aa		10.49	□□□□□ -0.73
CLN6-215	ENST00000636674	CR1	P17927	2039 aa		10.49	□□□□□ -0.73
CLN6-215	ENST00000636674	IL17D	Q8TAD2	202 aa		10.49	□□□□□ -0.73
CLN6-215	ENST00000636674	BEX4	Q9NWD9	120 aa	Predicted RBP	10.49	□□□□□ -0.73
CLN6-215	ENST00000636674	IGLV5-39	A0A0G2JS06	123 aa		10.48	□□□□□ -0.73
CLN6-215	ENST00000636674	DEFB113	Q30KQ7	82 aa		10.48	□□□□□ -0.73
CLN6-215	ENST00000636674	UBE2W	Q96B02	151 aa		10.48	□□□□□ -0.73
CLN6-215	ENST00000636674	CDKN2A-AS1	Q9UH64	79 aa		10.48	□□□□□ -0.73
CLN6-215	ENST00000636674	LST1	O00453	97 aa		10.48	□□□□□ -0.73
CLN6-215	ENST00000636674	DEFB114	Q30KQ6	69 aa		10.48	□□□□□ -0.73
CLN6-215	ENST00000636674	MAPK1IP1L	Q8NDC0	245 aa		10.48	□□□□□ -0.73
CLN6-215	ENST00000636674	DYNLRB2	Q8TF09	96 aa		10.48	□□□□□ -0.73
CLN6-215	ENST00000636674	F8	P00451	2351 aa		10.47	□□□□□ -0.73
CLN6-215	ENST00000636674		H7C423	109 aa		10.47	□□□□□ -0.73
CLN6-215	ENST00000636674	TMEM101	Q96IK0	257 aa		10.47	□□□□□ -0.73
CLN6-215	ENST00000636674	ITPR3	Q14573	2671 aa		10.47	□□□□□ -0.73
CLN6-215	ENST00000636674	IGHV3-38	A0A0C4DH36	116 aa		10.46	□□□□□ -0.73
CLN6-215	ENST00000636674	HERVK_113	P63121	156 aa		10.46	□□□□□ -0.73
CLN6-215	ENST00000636674	TEX29	Q8N6K0	151 aa		10.46	□□□□□ -0.73
CLN6-215	ENST00000636674	CSDC2	Q9Y534	153 aa	Known RBP	10.46	□□□□□ -0.73
CLN6-215	ENST00000636674	MAP1A	P78559	2803 aa	Predicted RBP	10.46	□□□□□ -0.73
CLN6-215	ENST00000636674	IGHV3OR16-12	A0A075B7B8	117 aa		10.46	□□□□□ -0.74
CLN6-215	ENST00000636674	TEX49	A0A1B0GTD5	131 aa		10.46	□□□□□ -0.74
CLN6-215	ENST00000636674		Q6Q795	121 aa		10.46	□□□□□ -0.74
CLN6-215	ENST00000636674	C2orf82	Q6UX34	121 aa		10.46	□□□□□ -0.74
CLN6-215	ENST00000636674	LRRC75A-AS1	Q8N1F1	130 aa		10.46	□□□□□ -0.74
CLN6-215	ENST00000636674	KIRREL3-AS3	Q8N7Y1	241 aa	Predicted RBP	10.46	□□□□□ -0.74
CLN6-215	ENST00000636674	TRAV26-1	A0A087WT03	109 aa		10.45	□□□□□ -0.74
CLN6-215	ENST00000636674	CIRBP	Q14011	172 aa	Known RBP	10.45	□□□□□ -0.74
CLN6-215	ENST00000636674	HIVEP1	P15822	2718 aa		10.45	□□□□□ -0.74
CLN6-215	ENST00000636674	TRAV8-4	A0A0B4J246	113 aa		10.45	□□□□□ -0.74
CLN6-215	ENST00000636674	DEFB121	Q5J5C9	76 aa		10.45	□□□□□ -0.74
CLN6-215	ENST00000636674	TRAV25	A0A0B4J276	109 aa		10.44	□□□□□ -0.74
CLN6-215	ENST00000636674	TRBV10-1	A0A0K0K1A3	114 aa		10.44	□□□□□ -0.74
CLN6-215	ENST00000636674	LINC00242	Q5T6M2	205 aa		10.44	□□□□□ -0.74
CLN6-215	ENST00000636674	DGAT2L7P	Q6IED9	249 aa		10.44	□□□□□ -0.74
CLN6-215	ENST00000636674	PPDPF	Q9H3Y8	114 aa		10.44	□□□□□ -0.74
CLN6-215	ENST00000636674	FAM240A	A0A1B0GVK7	77 aa		10.43	□□□□□ -0.74
CLN6-215	ENST00000636674	SNCG	O76070	127 aa		10.43	□□□□□ -0.74
CLN6-215	ENST00000636674	NPC2	P61916	151 aa		10.43	□□□□□ -0.74
CLN6-215	ENST00000636674	COX6A2	Q02221	97 aa		10.43	□□□□□ -0.74
CLN6-215	ENST00000636674	ODF3L2	Q3SX64	289 aa		10.43	□□□□□ -0.74
CLN6-215	ENST00000636674		Q6ZSV7	163 aa		10.43	□□□□□ -0.74
CLN6-215	ENST00000636674	COPS9	Q8WXC6	57 aa		10.43	□□□□□ -0.74
CLN6-215	ENST00000636674	MRPL23	Q16540	153 aa	Known RBP	10.43	□□□□□ -0.74
CLN6-215	ENST00000636674	KRTAP1-3	Q8IUG1	177 aa		10.43	□□□□□ -0.74
CLN6-215	ENST00000636674	LINC00308	Q8TCZ7	52 aa		10.43	□□□□□ -0.74
CLN6-215	ENST00000636674	CLEC2B	Q92478	149 aa		10.43	□□□□□ -0.74
CLN6-215	ENST00000636674	C1orf158	Q8N1D5	194 aa		10.42	□□□□□ -0.74
CLN6-215	ENST00000636674	CITED2	Q99967	270 aa	Predicted RBP	10.42	□□□□□ -0.74
CLN6-215	ENST00000636674	ZAN	Q9Y493	2812 aa		10.41	□□□□□ -0.74
CLN6-215	ENST00000636674	SMIM1	B2RUZ4	78 aa		10.41	□□□□□ -0.74
CLN6-215	ENST00000636674	DAZ2	Q13117	558 aa	Known RBP	10.41	□□□□□ -0.74
CLN6-215	ENST00000636674	DAZ4	Q86SG3	579 aa	Known RBP	10.41	□□□□□ -0.74
CLN6-215	ENST00000636674	ANAPC13	Q9BS18	74 aa		10.41	□□□□□ -0.74
CLN6-215	ENST00000636674		Q9H8V8	135 aa		10.41	□□□□□ -0.74
CLN6-215	ENST00000636674	DAZ3	Q9NR90	486 aa	Known RBP	10.41	□□□□□ -0.74
CLN6-215	ENST00000636674	ZNF469	Q96JG9	3925 aa	Predicted RBP	10.41	□□□□□ -0.74
CLN6-215	ENST00000636674	FLNA	P21333	2647 aa	Known RBP	10.41	□□□□□ -0.74
CLN6-215	ENST00000636674	MXRA5	Q9NR99	2828 aa		10.41	□□□□□ -0.74
CLN6-215	ENST00000636674		K7EQD1	137 aa		10.41	□□□□□ -0.74
CLN6-215	ENST00000636674	RPL36A	P83881	106 aa	Known RBP	10.41	□□□□□ -0.74
CLN6-215	ENST00000636674	GAGE2B	Q13066	116 aa		10.41	□□□□□ -0.74
CLN6-215	ENST00000636674	GAGE2E	Q4V326	116 aa		10.41	□□□□□ -0.74
CLN6-215	ENST00000636674	RPL36AL	Q969Q0	106 aa	Known RBP	10.41	□□□□□ -0.74
CLN6-215	ENST00000636674	GAGE2D	Q9UEU5	116 aa		10.41	□□□□□ -0.74
CLN6-215	ENST00000636674	TEP1	Q99973	2627 aa	Known RBP	10.41	□□□□□ -0.74
CLN6-215	ENST00000636674	TRAV4	A0A0B4J268	109 aa		10.4	□□□□□ -0.74
CLN6-215	ENST00000636674	LINC00694	P0DN24	101 aa		10.4	□□□□□ -0.74
CLN6-215	ENST00000636674	TMEM86B	Q8N661	226 aa		10.4	□□□□□ -0.74
CLN6-215	ENST00000636674	DAND5	Q8N907	189 aa		10.4	□□□□□ -0.74
CLN6-215	ENST00000636674	XCL2	Q9UBD3	114 aa		10.4	□□□□□ -0.74
CLN6-215	ENST00000636674	CRLF1	O75462	422 aa		10.4	□□□□□ -0.75
CLN6-215	ENST00000636674	KHDC1L	Q5JSQ8	128 aa		10.4	□□□□□ -0.75
CLN6-215	ENST00000636674	STH	Q8IWL8	128 aa		10.4	□□□□□ -0.75
CLN6-215	ENST00000636674	WFDC11	Q8NEX6	87 aa		10.4	□□□□□ -0.75
CLN6-215	ENST00000636674	ZNF625	Q96I27	306 aa	Predicted RBP	10.4	□□□□□ -0.75
CLN6-215	ENST00000636674	ACAN	P16112	2415 aa		10.39	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 119.3 ms