RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 SPANXA1Q9NS26 97 aa13.94□□□□□ -0.18
CHRNA4-209ENST00000627000 WFDC9Q8NEX5 89 aa13.93□□□□□ -0.18
CHRNA4-209ENST00000627000 TRGV4A0A0C4DH28 118 aa13.93□□□□□ -0.18
CHRNA4-209ENST00000627000 PLEKHB2Q96CS7 222 aa13.93□□□□□ -0.18
CHRNA4-209ENST00000627000 DEFB130BP0DP73 79 aa13.92□□□□□ -0.18
CHRNA4-209ENST00000627000 DEFB130AP0DP74 79 aa13.92□□□□□ -0.18
CHRNA4-209ENST00000627000 FHL2Q14192 279 aa13.92□□□□□ -0.18
CHRNA4-209ENST00000627000 TMEM223A0PJW6 202 aa13.91□□□□□ -0.18
CHRNA4-209ENST00000627000 LINC00694P0DN24 101 aa13.91□□□□□ -0.18
CHRNA4-209ENST00000627000 CRYBA4P53673 196 aa13.91□□□□□ -0.18
CHRNA4-209ENST00000627000 DAZ4Q86SG3 579 aaKnown RBP13.91□□□□□ -0.18
CHRNA4-209ENST00000627000 DAZ3Q9NR90 486 aaKnown RBP13.91□□□□□ -0.18
CHRNA4-209ENST00000627000 IGHV3-64A0A075B6Q5 118 aa13.9□□□□□ -0.18
CHRNA4-209ENST00000627000 TRBV6-4A0A1B0GX49 114 aa13.9□□□□□ -0.18
CHRNA4-209ENST00000627000 KRTAP24-1Q3LI83 254 aa13.9□□□□□ -0.18
CHRNA4-209ENST00000627000 CEND1Q8N111 149 aa13.9□□□□□ -0.18
CHRNA4-209ENST00000627000 MRPS36P82909 103 aaKnown RBP13.9□□□□□ -0.18
CHRNA4-209ENST00000627000 TAL2Q16559 108 aa13.9□□□□□ -0.18
CHRNA4-209ENST00000627000 DEFB135Q30KP9 77 aa13.9□□□□□ -0.18
CHRNA4-209ENST00000627000 TMEM238C9JI98 176 aa13.89□□□□□ -0.19
CHRNA4-209ENST00000627000 HIST1H4GQ99525 98 aa13.89□□□□□ -0.19
CHRNA4-209ENST00000627000 NAA38Q9BRA0 125 aaKnown RBP13.89□□□□□ -0.19
CHRNA4-209ENST00000627000 NBEAL2Q6ZNJ1 2754 aa13.89□□□□□ -0.19
CHRNA4-209ENST00000627000 KIR2DL5BQ8NHK3 375 aa13.89□□□□□ -0.19
CHRNA4-209ENST00000627000 TM2D2Q9BX73 214 aa13.89□□□□□ -0.19
CHRNA4-209ENST00000627000 CIDEAO60543 219 aa13.88□□□□□ -0.19
CHRNA4-209ENST00000627000 J3QQQ9 107 aa13.88□□□□□ -0.19
CHRNA4-209ENST00000627000 SCGB1D4Q6XE38 83 aa13.88□□□□□ -0.19
CHRNA4-209ENST00000627000 LINC00612Q8N6U2 182 aa13.88□□□□□ -0.19
CHRNA4-209ENST00000627000 CYSRT1A8MQ03 144 aa13.87□□□□□ -0.19
CHRNA4-209ENST00000627000 J3QR89 54 aa13.87□□□□□ -0.19
CHRNA4-209ENST00000627000 DGAT2L7PQ6IED9 249 aa13.87□□□□□ -0.19
CHRNA4-209ENST00000627000 SBSPONQ8IVN8 264 aa13.87□□□□□ -0.19
CHRNA4-209ENST00000627000 DEFB4AO15263 64 aa13.86□□□□□ -0.19
CHRNA4-209ENST00000627000 TIMM21Q9BVV7 248 aa13.86□□□□□ -0.19
CHRNA4-209ENST00000627000 SMIM9A6NGZ8 99 aa13.86□□□□□ -0.19
CHRNA4-209ENST00000627000 K7ERJ3 54 aa13.86□□□□□ -0.19
CHRNA4-209ENST00000627000 LEPROTO15243 131 aa13.85□□□□□ -0.19
CHRNA4-209ENST00000627000 WIPF1O43516 503 aa13.85□□□□□ -0.19
CHRNA4-209ENST00000627000 APOC4P55056 127 aa13.85□□□□□ -0.19
CHRNA4-209ENST00000627000 SCGB1A1P11684 91 aa13.85□□□□□ -0.19
CHRNA4-209ENST00000627000 LGALS3P17931 250 aaKnown RBP13.85□□□□□ -0.19
CHRNA4-209ENST00000627000 NHP2Q9NX24 153 aaKnown RBP13.85□□□□□ -0.19
CHRNA4-209ENST00000627000 TINCRA0A1B0GVN0 87 aa13.84□□□□□ -0.19
CHRNA4-209ENST00000627000 UBE2D1P51668 147 aa13.84□□□□□ -0.19
CHRNA4-209ENST00000627000 RPL24P83731 157 aaKnown RBP13.84□□□□□ -0.19
CHRNA4-209ENST00000627000 TRAV8-3A0A0A6YYJ7 113 aa13.83□□□□□ -0.19
CHRNA4-209ENST00000627000 A0A0J9YY99 117 aa13.83□□□□□ -0.19
CHRNA4-209ENST00000627000 FAM222AQ5U5X8 452 aa13.83□□□□□ -0.19
CHRNA4-209ENST00000627000 F8W1H4 67 aa13.83□□□□□ -0.2
CHRNA4-209ENST00000627000 GTSF1LQ9H1H1 148 aa13.83□□□□□ -0.2
CHRNA4-209ENST00000627000 IGHV4-30-4P0DP06 118 aa13.82□□□□□ -0.2
CHRNA4-209ENST00000627000 OXLD1Q5BKU9 147 aa13.82□□□□□ -0.2
CHRNA4-209ENST00000627000 TMEM243Q9BU79 118 aa13.82□□□□□ -0.2
CHRNA4-209ENST00000627000 FBN1P35555 2871 aaKnown RBP13.81□□□□□ -0.2
CHRNA4-209ENST00000627000 IGHV4-28A0A0C4DH34 117 aa13.81□□□□□ -0.2
CHRNA4-209ENST00000627000 IGHV3-30-3P0DP02 117 aa13.81□□□□□ -0.2
CHRNA4-209ENST00000627000 SPINK8P0C7L1 97 aa13.8□□□□□ -0.2
CHRNA4-209ENST00000627000 CSDC2Q9Y534 153 aaKnown RBP13.8□□□□□ -0.2
CHRNA4-209ENST00000627000 A8MZ25 164 aa13.79□□□□□ -0.2
CHRNA4-209ENST00000627000 COX6A2Q02221 97 aa13.79□□□□□ -0.2
CHRNA4-209ENST00000627000 SRSF9Q13242 221 aaKnown RBP eCLIP13.79□□□□□ -0.2
CHRNA4-209ENST00000627000 GEMIN7Q9H840 131 aaKnown RBP13.79□□□□□ -0.2
CHRNA4-209ENST00000627000 UBE2L6O14933 153 aa13.79□□□□□ -0.2
CHRNA4-209ENST00000627000 CDC42SE2Q9NRR3 84 aa13.79□□□□□ -0.2
CHRNA4-209ENST00000627000 CDKN2A-AS1Q9UH64 79 aa13.79□□□□□ -0.2
CHRNA4-209ENST00000627000 TEX48A0A1B0GUV7 120 aa13.78□□□□□ -0.2
CHRNA4-209ENST00000627000 IGLL5B9A064 214 aa13.78□□□□□ -0.2
CHRNA4-209ENST00000627000 IGHV1-58A0A0C4DH39 117 aa13.78□□□□□ -0.2
CHRNA4-209ENST00000627000 GYPEP15421 78 aa13.78□□□□□ -0.2
CHRNA4-209ENST00000627000 C12orf74Q32Q52 190 aa13.78□□□□□ -0.2
CHRNA4-209ENST00000627000 TRAV13-1A0A0B4J241 112 aa13.77□□□□□ -0.21
CHRNA4-209ENST00000627000 LYRM9A8MSI8 78 aa13.77□□□□□ -0.21
CHRNA4-209ENST00000627000 LINC00242Q5T6M2 205 aa13.77□□□□□ -0.21
CHRNA4-209ENST00000627000 C3orf56Q8N813 242 aa13.77□□□□□ -0.21
CHRNA4-209ENST00000627000 SIGMAR1Q99720 223 aa13.77□□□□□ -0.21
CHRNA4-209ENST00000627000 TRBV6-8A0A0A6YYG3 113 aa13.76□□□□□ -0.21
CHRNA4-209ENST00000627000 TIRAPP58753 221 aa13.76□□□□□ -0.21
CHRNA4-209ENST00000627000 KRTAP10-11P60412 298 aa13.76□□□□□ -0.21
CHRNA4-209ENST00000627000 GAGE6Q13070 117 aa13.76□□□□□ -0.21
CHRNA4-209ENST00000627000 C10orf126Q8N4M7 172 aa13.76□□□□□ -0.21
CHRNA4-209ENST00000627000 Q8NAQ8 132 aa13.76□□□□□ -0.21
CHRNA4-209ENST00000627000 PRIMA1Q86XR5 153 aa13.76□□□□□ -0.21
CHRNA4-209ENST00000627000 VSIG2Q96IQ7 327 aa13.76□□□□□ -0.21
CHRNA4-209ENST00000627000 CELA1Q9UNI1 258 aa13.76□□□□□ -0.21
CHRNA4-209ENST00000627000 BAHCC1Q9P281 2608 aa13.75□□□□□ -0.21
CHRNA4-209ENST00000627000 IGLV5-45A0A087WSX0 123 aa13.75□□□□□ -0.21
CHRNA4-209ENST00000627000 SPANXB1Q9NS25 103 aaPredicted RBP13.75□□□□□ -0.21
CHRNA4-209ENST00000627000 PRO0255Q9UI72 69 aa13.75□□□□□ -0.21
CHRNA4-209ENST00000627000 RNF183Q96D59 192 aa13.74□□□□□ -0.21
CHRNA4-209ENST00000627000 TMEM101Q96IK0 257 aa13.73□□□□□ -0.21
CHRNA4-209ENST00000627000 STAB1Q9NY15 2570 aa13.73□□□□□ -0.21
CHRNA4-209ENST00000627000 IGHV3-30P01768 117 aa13.73□□□□□ -0.21
CHRNA4-209ENST00000627000 IGHV3-30-5P0DP03 117 aa13.73□□□□□ -0.21
CHRNA4-209ENST00000627000 ATP6V0E2Q8NHE4 81 aa13.73□□□□□ -0.21
CHRNA4-209ENST00000627000 CHCHD5Q9BSY4 110 aa13.73□□□□□ -0.21
CHRNA4-209ENST00000627000 A0A096LPF7 62 aa13.72□□□□□ -0.21
CHRNA4-209ENST00000627000 A0A0J9YXY3 114 aa13.72□□□□□ -0.21
CHRNA4-209ENST00000627000 A0A1B0GWB2 263 aa13.72□□□□□ -0.21
CHRNA4-209ENST00000627000 MIFP14174 115 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms