RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 FA2HQ7L5A8 372 aa12.76□□□□□ -0.37
SQSTM1-216ENST00000626660 UBE2D4Q9Y2X8 147 aa12.76□□□□□ -0.37
SQSTM1-216ENST00000626660 CSDC2Q9Y534 153 aaKnown RBP12.76□□□□□ -0.37
SQSTM1-216ENST00000626660 TRAV8-4A0A0B4J246 113 aa12.75□□□□□ -0.37
SQSTM1-216ENST00000626660 EREGO14944 169 aa12.75□□□□□ -0.37
SQSTM1-216ENST00000626660 G0S2P27469 103 aa12.75□□□□□ -0.37
SQSTM1-216ENST00000626660 SPANXA1Q9NS26 97 aa12.75□□□□□ -0.37
SQSTM1-216ENST00000626660 IGKV3OR2-268A0A0C4DH90 116 aa12.74□□□□□ -0.37
SQSTM1-216ENST00000626660 COLCA2A8K830 154 aa12.74□□□□□ -0.37
SQSTM1-216ENST00000626660 ATP6V1G1O75348 118 aa12.74□□□□□ -0.37
SQSTM1-216ENST00000626660 ZNF664Q8N3J9 261 aa12.74□□□□□ -0.37
SQSTM1-216ENST00000626660 CDC42SE2Q9NRR3 84 aa12.74□□□□□ -0.37
SQSTM1-216ENST00000626660 CYSLTR1Q9Y271 337 aa12.74□□□□□ -0.37
SQSTM1-216ENST00000626660 DNAH17Q9UFH2 4485 aa12.73□□□□□ -0.37
SQSTM1-216ENST00000626660 C18orf32Q8TCD1 76 aa12.73□□□□□ -0.37
SQSTM1-216ENST00000626660 IGLV10-54A0A075B6I4 117 aa12.72□□□□□ -0.37
SQSTM1-216ENST00000626660 C2orf66Q6UXQ4 117 aa12.72□□□□□ -0.37
SQSTM1-216ENST00000626660 TRGC2P03986 189 aa12.71□□□□□ -0.37
SQSTM1-216ENST00000626660 A0A087WTM6 91 aa12.7□□□□□ -0.38
SQSTM1-216ENST00000626660 LINC01546A6NGU7 62 aa12.7□□□□□ -0.38
SQSTM1-216ENST00000626660 RAB5BP61020 215 aa12.7□□□□□ -0.38
SQSTM1-216ENST00000626660 Q6ZUT4 128 aa12.7□□□□□ -0.38
SQSTM1-216ENST00000626660 PYGO1Q9Y3Y4 419 aa12.7□□□□□ -0.38
SQSTM1-216ENST00000626660 MRPS36P82909 103 aaKnown RBP12.69□□□□□ -0.38
SQSTM1-216ENST00000626660 AP5S1Q9NUS5 200 aa12.69□□□□□ -0.38
SQSTM1-216ENST00000626660 A0A1B0GVY2 172 aa12.68□□□□□ -0.38
SQSTM1-216ENST00000626660 LINC01549A6NIU2 74 aa12.68□□□□□ -0.38
SQSTM1-216ENST00000626660 SS18Q15532 418 aa12.68□□□□□ -0.38
SQSTM1-216ENST00000626660 RNASE13Q5GAN3 156 aaKnown RBP12.68□□□□□ -0.38
SQSTM1-216ENST00000626660 FAT2Q9NYQ8 4349 aa12.67□□□□□ -0.38
SQSTM1-216ENST00000626660 LINC00959A0A1B0GUT2 108 aa12.67□□□□□ -0.38
SQSTM1-216ENST00000626660 LRCOL1A6NCL2 159 aa12.67□□□□□ -0.38
SQSTM1-216ENST00000626660 LINC00614P0C842 121 aa12.67□□□□□ -0.38
SQSTM1-216ENST00000626660 MAPKAPK5-AS1Q8N8E1 139 aa12.67□□□□□ -0.38
SQSTM1-216ENST00000626660 BAALCQ8WXS3 180 aa12.67□□□□□ -0.38
SQSTM1-216ENST00000626660 CHCHD10Q8WYQ3 142 aaPredicted RBP12.67□□□□□ -0.38
SQSTM1-216ENST00000626660 TOMM6Q96B49 74 aa12.67□□□□□ -0.38
SQSTM1-216ENST00000626660 CCL25O15444 150 aa12.66□□□□□ -0.38
SQSTM1-216ENST00000626660 TMEM141Q96I45 108 aa12.66□□□□□ -0.38
SQSTM1-216ENST00000626660 OPRPNQ99935 248 aaPredicted RBP12.66□□□□□ -0.38
SQSTM1-216ENST00000626660 GAGE12HA6NDE8 117 aa12.65□□□□□ -0.38
SQSTM1-216ENST00000626660 LECT2O14960 151 aa12.65□□□□□ -0.38
SQSTM1-216ENST00000626660 NPSP0C0P6 89 aa12.65□□□□□ -0.38
SQSTM1-216ENST00000626660 KRTAP26-1Q6PEX3 210 aa12.65□□□□□ -0.38
SQSTM1-216ENST00000626660 Q6ZN92 141 aa12.65□□□□□ -0.38
SQSTM1-216ENST00000626660 IGLV4-3A0A075B6K6 122 aa12.64□□□□□ -0.39
SQSTM1-216ENST00000626660 TRAV13-1A0A0B4J241 112 aa12.64□□□□□ -0.39
SQSTM1-216ENST00000626660 C1orf196B1AJZ1 125 aa12.64□□□□□ -0.39
SQSTM1-216ENST00000626660 PAPPA-AS1Q5QFB9 102 aa12.64□□□□□ -0.39
SQSTM1-216ENST00000626660 SPATA12Q7Z6I5 190 aa12.64□□□□□ -0.39
SQSTM1-216ENST00000626660 BAGE3Q86Y29 109 aa12.64□□□□□ -0.39
SQSTM1-216ENST00000626660 SCGB3A1Q96QR1 104 aa12.64□□□□□ -0.39
SQSTM1-216ENST00000626660 IFITM10A6NMD0 228 aa12.63□□□□□ -0.39
SQSTM1-216ENST00000626660 XCL1P47992 114 aa12.63□□□□□ -0.39
SQSTM1-216ENST00000626660 C14orf177Q52M58 125 aa12.63□□□□□ -0.39
SQSTM1-216ENST00000626660 TEX43Q6ZNM6 134 aa12.63□□□□□ -0.39
SQSTM1-216ENST00000626660 FAM104AQ969W3 186 aa12.63□□□□□ -0.39
SQSTM1-216ENST00000626660 URB1-AS1Q96HZ7 61 aa12.63□□□□□ -0.39
SQSTM1-216ENST00000626660 TIMM17AQ99595 171 aa12.63□□□□□ -0.39
SQSTM1-216ENST00000626660 HERC2O95714 4834 aa12.62□□□□□ -0.39
SQSTM1-216ENST00000626660 IGIPA6NJ69 53 aa12.62□□□□□ -0.39
SQSTM1-216ENST00000626660 WFDC2Q14508 124 aa12.62□□□□□ -0.39
SQSTM1-216ENST00000626660 ERASQ7Z444 233 aa12.62□□□□□ -0.39
SQSTM1-216ENST00000626660 Q8N814 137 aa12.62□□□□□ -0.39
SQSTM1-216ENST00000626660 CHCHD1Q96BP2 118 aaKnown RBP12.62□□□□□ -0.39
SQSTM1-216ENST00000626660 C2orf88Q9BSF0 95 aa12.62□□□□□ -0.39
SQSTM1-216ENST00000626660 USP17L23D6RBM5 183 aa12.61□□□□□ -0.39
SQSTM1-216ENST00000626660 HBDP02042 147 aa12.61□□□□□ -0.39
SQSTM1-216ENST00000626660 VCX2Q9H322 139 aa12.61□□□□□ -0.39
SQSTM1-216ENST00000626660 CD164L2Q6UWJ8 174 aa12.6□□□□□ -0.39
SQSTM1-216ENST00000626660 PGPEP1Q9NXJ5 209 aa12.6□□□□□ -0.39
SQSTM1-216ENST00000626660 NTN5Q8WTR8 489 aaPredicted RBP12.59□□□□□ -0.39
SQSTM1-216ENST00000626660 KRTAP10-2P60368 255 aa12.58□□□□□ -0.4
SQSTM1-216ENST00000626660 FOXI1Q12951 378 aa12.58□□□□□ -0.4
SQSTM1-216ENST00000626660 PMCHL1Q16048 86 aa12.58□□□□□ -0.4
SQSTM1-216ENST00000626660 CDPF1Q6NVV7 123 aa12.58□□□□□ -0.4
SQSTM1-216ENST00000626660 CFAP161Q6P656 301 aa12.58□□□□□ -0.4
SQSTM1-216ENST00000626660 PCLOQ9Y6V0 5065 aa12.58□□□□□ -0.4
SQSTM1-216ENST00000626660 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.57□□□□□ -0.4
SQSTM1-216ENST00000626660 HSBP1O75506 76 aa12.57□□□□□ -0.4
SQSTM1-216ENST00000626660 AMELXQ99217 191 aa12.57□□□□□ -0.4
SQSTM1-216ENST00000626660 HECTD4Q9Y4D8 3996 aa12.57□□□□□ -0.4
SQSTM1-216ENST00000626660 A0A096LNJ9 63 aa12.56□□□□□ -0.4
SQSTM1-216ENST00000626660 LINC00173Q6ZV60 143 aa12.56□□□□□ -0.4
SQSTM1-216ENST00000626660 PKD1P98161 4303 aa12.55□□□□□ -0.4
SQSTM1-216ENST00000626660 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.55□□□□□ -0.4
SQSTM1-216ENST00000626660 IGLV5-52A0A0A0MRZ9 124 aa12.55□□□□□ -0.4
SQSTM1-216ENST00000626660 C16orf90A8MZG2 172 aa12.55□□□□□ -0.4
SQSTM1-216ENST00000626660 COX7A2LO14548 114 aa12.55□□□□□ -0.4
SQSTM1-216ENST00000626660 ZC2HC1BQ5TFG8 222 aa12.55□□□□□ -0.4
SQSTM1-216ENST00000626660 MALP21145 153 aa12.54□□□□□ -0.4
SQSTM1-216ENST00000626660 UBE2D1P51668 147 aa12.54□□□□□ -0.4
SQSTM1-216ENST00000626660 hDV102S1A0JD36 115 aa12.53□□□□□ -0.4
SQSTM1-216ENST00000626660 SERF1AO75920 110 aa12.53□□□□□ -0.4
SQSTM1-216ENST00000626660 ATP5LO75964 103 aa12.53□□□□□ -0.4
SQSTM1-216ENST00000626660 PDZD11Q5EBL8 140 aa12.53□□□□□ -0.4
SQSTM1-216ENST00000626660 IGHV1-58A0A0C4DH39 117 aa12.52□□□□□ -0.41
SQSTM1-216ENST00000626660 HIST1H2BKO60814 126 aa12.52□□□□□ -0.41
SQSTM1-216ENST00000626660 HIST1H2BJP06899 126 aa12.52□□□□□ -0.41
SQSTM1-216ENST00000626660 PRSS1P07477 247 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms