RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 TRAPPC2BP0DI82 140 aa2.51□□□□□ -2.01
LINC00540-201ENST00000611481 HIST1H2BOP23527 126 aa2.51□□□□□ -2.01
LINC00540-201ENST00000611481 HIST1H2BBP33778 126 aa2.51□□□□□ -2.01
LINC00540-201ENST00000611481 HIST1H2BDP58876 126 aa2.51□□□□□ -2.01
LINC00540-201ENST00000611481 RPS11P62280 158 aaKnown RBP eCLIP2.51□□□□□ -2.01
LINC00540-201ENST00000611481 HIST1H2BCP62807 126 aa2.51□□□□□ -2.01
LINC00540-201ENST00000611481 RPL30P62888 115 aaKnown RBP2.51□□□□□ -2.01
LINC00540-201ENST00000611481 HIST2H2BEQ16778 126 aa2.51□□□□□ -2.01
LINC00540-201ENST00000611481 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.51□□□□□ -2.01
LINC00540-201ENST00000611481 C10orf91Q5T1B1 145 aa2.51□□□□□ -2.01
LINC00540-201ENST00000611481 Q5W150 140 aa2.51□□□□□ -2.01
LINC00540-201ENST00000611481 RPL22L1Q6P5R6 122 aaKnown RBP2.51□□□□□ -2.01
LINC00540-201ENST00000611481 KTN1-AS1Q86SY8 53 aa2.51□□□□□ -2.01
LINC00540-201ENST00000611481 C3orf22Q8N5N4 141 aa2.51□□□□□ -2.01
LINC00540-201ENST00000611481 CYB561D1Q8N8Q1 229 aa2.51□□□□□ -2.01
LINC00540-201ENST00000611481 DAND5Q8N907 189 aa2.51□□□□□ -2.01
LINC00540-201ENST00000611481 OR10D4PQ8NGN7 298 aa2.51□□□□□ -2.01
LINC00540-201ENST00000611481 HIST1H2BHQ93079 126 aa2.51□□□□□ -2.01
LINC00540-201ENST00000611481 HIST1H2BAQ96A08 127 aa2.51□□□□□ -2.01
LINC00540-201ENST00000611481 HIST1H2BNQ99877 126 aa2.51□□□□□ -2.01
LINC00540-201ENST00000611481 HIST1H2BMQ99879 126 aa2.51□□□□□ -2.01
LINC00540-201ENST00000611481 BET1LQ9NYM9 111 aa2.51□□□□□ -2.01
LINC00540-201ENST00000611481 COPZ2Q9P299 210 aa2.51□□□□□ -2.01
LINC00540-201ENST00000611481 PRO0255Q9UI72 69 aa2.51□□□□□ -2.01
LINC00540-201ENST00000611481 IGKV2D-24A0A075B6R9 120 aa2.5□□□□□ -2.01
LINC00540-201ENST00000611481 IGKV1OR2-108A0A075B7D4 117 aa2.5□□□□□ -2.01
LINC00540-201ENST00000611481 A8MTW9 85 aa2.5□□□□□ -2.01
LINC00540-201ENST00000611481 M0R129 80 aa2.5□□□□□ -2.01
LINC00540-201ENST00000611481 M0R2T5 61 aa2.5□□□□□ -2.01
LINC00540-201ENST00000611481 UBE2L6O14933 153 aa2.5□□□□□ -2.01
LINC00540-201ENST00000611481 ZNF861PO60384 105 aa2.5□□□□□ -2.01
LINC00540-201ENST00000611481 SH2D1AO60880 128 aa2.5□□□□□ -2.01
LINC00540-201ENST00000611481 IGKV1-5P01602 117 aa2.5□□□□□ -2.01
LINC00540-201ENST00000611481 COX4I1P13073 169 aa2.5□□□□□ -2.01
LINC00540-201ENST00000611481 S100A7P31151 101 aa2.5□□□□□ -2.01
LINC00540-201ENST00000611481 LPAR6P43657 344 aa2.5□□□□□ -2.01
LINC00540-201ENST00000611481 TSPEAR-AS2P59090 65 aa2.5□□□□□ -2.01
LINC00540-201ENST00000611481 PPP3R1P63098 170 aa2.5□□□□□ -2.01
LINC00540-201ENST00000611481 CIRBPQ14011 172 aaKnown RBP2.5□□□□□ -2.01
LINC00540-201ENST00000611481 ZNF846Q147U1 533 aa2.5□□□□□ -2.01
LINC00540-201ENST00000611481 SPINK9Q5DT21 86 aa2.5□□□□□ -2.01
LINC00540-201ENST00000611481 SLC25A34Q6PIV7 304 aa2.5□□□□□ -2.01
LINC00540-201ENST00000611481 PP632Q6XCG6 107 aa2.5□□□□□ -2.01
LINC00540-201ENST00000611481 SDIM1Q6ZPB5 146 aa2.5□□□□□ -2.01
LINC00540-201ENST00000611481 OR5A1Q8NGJ0 315 aa2.5□□□□□ -2.01
LINC00540-201ENST00000611481 DNAJC9Q8WXX5 260 aa2.5□□□□□ -2.01
LINC00540-201ENST00000611481 LSM10Q969L4 123 aaKnown RBP2.5□□□□□ -2.01
LINC00540-201ENST00000611481 VCXQ9H320 206 aa2.5□□□□□ -2.01
LINC00540-201ENST00000611481 HHLA3Q9XRX5 114 aa2.5□□□□□ -2.01
LINC00540-201ENST00000611481 FUT9Q9Y231 359 aa2.5□□□□□ -2.01
LINC00540-201ENST00000611481 LAMTOR2Q9Y2Q5 125 aa2.5□□□□□ -2.01
LINC00540-201ENST00000611481 KMT2DO14686 5537 aa2.49□□□□□ -2.01
LINC00540-201ENST00000611481 TRGV1A0A0A0MS02 117 aa2.49□□□□□ -2.01
LINC00540-201ENST00000611481 A6NED7 52 aa2.49□□□□□ -2.01
LINC00540-201ENST00000611481 BBIP1A8MTZ0 92 aa2.49□□□□□ -2.01
LINC00540-201ENST00000611481 SLC25A20O43772 301 aa2.49□□□□□ -2.01
LINC00540-201ENST00000611481 LINC00869P0C866 280 aa2.49□□□□□ -2.01
LINC00540-201ENST00000611481 RPL7P18124 248 aaKnown RBP2.49□□□□□ -2.01
LINC00540-201ENST00000611481 CSN1S1P47710 185 aa2.49□□□□□ -2.01
LINC00540-201ENST00000611481 TAS2R20P59543 309 aa2.49□□□□□ -2.01
LINC00540-201ENST00000611481 NDUFA5Q16718 116 aa2.49□□□□□ -2.01
LINC00540-201ENST00000611481 DPPA3Q6W0C5 159 aa2.49□□□□□ -2.01
LINC00540-201ENST00000611481 LCA10Q71F78 164 aa2.49□□□□□ -2.01
LINC00540-201ENST00000611481 ARPINQ7Z6K5 226 aa2.49□□□□□ -2.01
LINC00540-201ENST00000611481 CROCCP2Q86T23 111 aa2.49□□□□□ -2.01
LINC00540-201ENST00000611481 C9orf163Q8N9P6 203 aa2.49□□□□□ -2.01
LINC00540-201ENST00000611481 MND1Q9BWT6 205 aa2.49□□□□□ -2.01
LINC00540-201ENST00000611481 C11orf1Q9H5F2 150 aa2.49□□□□□ -2.01
LINC00540-201ENST00000611481 XAGE1AQ9HD64 81 aa2.49□□□□□ -2.01
LINC00540-201ENST00000611481 RPRMQ9NS64 109 aa2.49□□□□□ -2.01
LINC00540-201ENST00000611481 ANAPC11Q9NYG5 84 aa2.49□□□□□ -2.01
LINC00540-201ENST00000611481 PLAC8Q9NZF1 115 aa2.49□□□□□ -2.01
LINC00540-201ENST00000611481 IL36BQ9NZH7 164 aa2.49□□□□□ -2.01
LINC00540-201ENST00000611481 TP73-AS1Q9UF72 201 aa2.49□□□□□ -2.01
LINC00540-201ENST00000611481 IGLV4-69A0A075B6H9 119 aa2.48□□□□□ -2.01
LINC00540-201ENST00000611481 H7BYZ3 331 aa2.48□□□□□ -2.01
LINC00540-201ENST00000611481 ZNF73O43830 326 aaPredicted RBP2.48□□□□□ -2.01
LINC00540-201ENST00000611481 HIST1H4AP62805 103 aaKnown RBP2.48□□□□□ -2.01
LINC00540-201ENST00000611481 AADACL3Q5VUY0 350 aa2.48□□□□□ -2.01
LINC00540-201ENST00000611481 RASL11AQ6T310 242 aa2.48□□□□□ -2.01
LINC00540-201ENST00000611481 ADM2Q7Z4H4 148 aa2.48□□□□□ -2.01
LINC00540-201ENST00000611481 LYZL2Q7Z4W2 148 aa2.48□□□□□ -2.01
LINC00540-201ENST00000611481 BPIFB6Q8NFQ5 453 aa2.48□□□□□ -2.01
LINC00540-201ENST00000611481 OR5AK2Q8NH90 309 aa2.48□□□□□ -2.01
LINC00540-201ENST00000611481 Q8TAT8 98 aa2.48□□□□□ -2.01
LINC00540-201ENST00000611481 SPACA4Q8TDM5 124 aa2.48□□□□□ -2.01
LINC00540-201ENST00000611481 UBE2WQ96B02 151 aa2.48□□□□□ -2.01
LINC00540-201ENST00000611481 TXNDC17Q9BRA2 123 aa2.48□□□□□ -2.01
LINC00540-201ENST00000611481 GINS4Q9BRT9 223 aa2.48□□□□□ -2.01
LINC00540-201ENST00000611481 DERL1Q9BUN8 251 aa2.48□□□□□ -2.01
LINC00540-201ENST00000611481 NDUFA4L2Q9NRX3 87 aa2.48□□□□□ -2.01
LINC00540-201ENST00000611481 HSPB8Q9UJY1 196 aa2.48□□□□□ -2.01
LINC00540-201ENST00000611481 TRBV6-7A0A0A0MS04 114 aa2.47□□□□□ -2.01
LINC00540-201ENST00000611481 TRGV4A0A0C4DH28 118 aa2.47□□□□□ -2.01
LINC00540-201ENST00000611481 TRDV1A0A1B0GX56 115 aa2.47□□□□□ -2.01
LINC00540-201ENST00000611481 GRIFINA4D1Z8 144 aa2.47□□□□□ -2.01
LINC00540-201ENST00000611481 J3QLW9 94 aa2.47□□□□□ -2.01
LINC00540-201ENST00000611481 IGLV7-43P04211 117 aa2.47□□□□□ -2.01
LINC00540-201ENST00000611481 CD2P06729 351 aa2.47□□□□□ -2.01
LINC00540-201ENST00000611481 BCL2P10415 239 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms