RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 COLCA2A8K830 154 aa12.86□□□□□ -0.35
UPF1-209ENST00000600310 RPL39P62891 51 aaKnown RBP12.86□□□□□ -0.35
UPF1-209ENST00000600310 ORMDL2Q53FV1 153 aa12.86□□□□□ -0.35
UPF1-209ENST00000600310 A0A087WTM6 91 aa12.85□□□□□ -0.35
UPF1-209ENST00000600310 TRAV8-4A0A0B4J246 113 aa12.85□□□□□ -0.35
UPF1-209ENST00000600310 SCO1O75880 301 aa12.85□□□□□ -0.35
UPF1-209ENST00000600310 ZNF664Q8N3J9 261 aa12.85□□□□□ -0.35
UPF1-209ENST00000600310 MAPKAPK5-AS1Q8N8E1 139 aa12.85□□□□□ -0.35
UPF1-209ENST00000600310 SPANXA1Q9NS26 97 aa12.85□□□□□ -0.35
UPF1-209ENST00000600310 DNAH17Q9UFH2 4485 aa12.84□□□□□ -0.35
UPF1-209ENST00000600310 LRCOL1A6NCL2 159 aa12.84□□□□□ -0.35
UPF1-209ENST00000600310 LINC01546A6NGU7 62 aa12.84□□□□□ -0.35
UPF1-209ENST00000600310 KRTAP26-1Q6PEX3 210 aa12.84□□□□□ -0.35
UPF1-209ENST00000600310 C18orf32Q8TCD1 76 aa12.83□□□□□ -0.36
UPF1-209ENST00000600310 S100A1P23297 94 aa12.82□□□□□ -0.36
UPF1-209ENST00000600310 G0S2P27469 103 aa12.82□□□□□ -0.36
UPF1-209ENST00000600310 CYSLTR1Q9Y271 337 aa12.82□□□□□ -0.36
UPF1-209ENST00000600310 PYGO1Q9Y3Y4 419 aa12.82□□□□□ -0.36
UPF1-209ENST00000600310 IGLV10-54A0A075B6I4 117 aa12.81□□□□□ -0.36
UPF1-209ENST00000600310 IGKV3OR2-268A0A0C4DH90 116 aa12.81□□□□□ -0.36
UPF1-209ENST00000600310 EREGO14944 169 aa12.81□□□□□ -0.36
UPF1-209ENST00000600310 MRPS36P82909 103 aaKnown RBP12.81□□□□□ -0.36
UPF1-209ENST00000600310 C2orf66Q6UXQ4 117 aa12.81□□□□□ -0.36
UPF1-209ENST00000600310 Q6ZUT4 128 aa12.81□□□□□ -0.36
UPF1-209ENST00000600310 FA2HQ7L5A8 372 aa12.81□□□□□ -0.36
UPF1-209ENST00000600310 FAT2Q9NYQ8 4349 aa12.8□□□□□ -0.36
UPF1-209ENST00000600310 TRGC2P03986 189 aa12.8□□□□□ -0.36
UPF1-209ENST00000600310 BAALCQ8WXS3 180 aa12.8□□□□□ -0.36
UPF1-209ENST00000600310 FAM104AQ969W3 186 aa12.8□□□□□ -0.36
UPF1-209ENST00000600310 KRTAP17-1Q9BYP8 105 aa12.8□□□□□ -0.36
UPF1-209ENST00000600310 LINC00959A0A1B0GUT2 108 aa12.79□□□□□ -0.36
UPF1-209ENST00000600310 ATP6V1G1O75348 118 aa12.79□□□□□ -0.36
UPF1-209ENST00000600310 WFDC2Q14508 124 aa12.78□□□□□ -0.36
UPF1-209ENST00000600310 RNASE13Q5GAN3 156 aaKnown RBP12.78□□□□□ -0.36
UPF1-209ENST00000600310 URB1-AS1Q96HZ7 61 aa12.78□□□□□ -0.36
UPF1-209ENST00000600310 OPRPNQ99935 248 aaPredicted RBP12.78□□□□□ -0.36
UPF1-209ENST00000600310 LINC00614P0C842 121 aa12.77□□□□□ -0.37
UPF1-209ENST00000600310 CHCHD10Q8WYQ3 142 aaPredicted RBP12.77□□□□□ -0.37
UPF1-209ENST00000600310 TOMM6Q96B49 74 aa12.77□□□□□ -0.37
UPF1-209ENST00000600310 AP5S1Q9NUS5 200 aa12.77□□□□□ -0.37
UPF1-209ENST00000600310 IGLV4-3A0A075B6K6 122 aa12.76□□□□□ -0.37
UPF1-209ENST00000600310 IGIPA6NJ69 53 aa12.76□□□□□ -0.37
UPF1-209ENST00000600310 RAB5BP61020 215 aa12.76□□□□□ -0.37
UPF1-209ENST00000600310 SS18Q15532 418 aa12.76□□□□□ -0.37
UPF1-209ENST00000600310 SPATA12Q7Z6I5 190 aa12.76□□□□□ -0.37
UPF1-209ENST00000600310 Q8N814 137 aa12.76□□□□□ -0.37
UPF1-209ENST00000600310 GAGE12HA6NDE8 117 aa12.75□□□□□ -0.37
UPF1-209ENST00000600310 LINC01549A6NIU2 74 aa12.75□□□□□ -0.37
UPF1-209ENST00000600310 LECT2O14960 151 aa12.75□□□□□ -0.37
UPF1-209ENST00000600310 CCL25O15444 150 aa12.75□□□□□ -0.37
UPF1-209ENST00000600310 NPSP0C0P6 89 aa12.75□□□□□ -0.37
UPF1-209ENST00000600310 KRTAP10-2P60368 255 aa12.75□□□□□ -0.37
UPF1-209ENST00000600310 TMEM141Q96I45 108 aa12.74□□□□□ -0.37
UPF1-209ENST00000600310 PGPEP1Q9NXJ5 209 aa12.74□□□□□ -0.37
UPF1-209ENST00000600310 HECTD4Q9Y4D8 3996 aa12.73□□□□□ -0.37
UPF1-209ENST00000600310 TRAV13-1A0A0B4J241 112 aa12.73□□□□□ -0.37
UPF1-209ENST00000600310 C1orf196B1AJZ1 125 aa12.73□□□□□ -0.37
UPF1-209ENST00000600310 TIMM17AQ99595 171 aa12.73□□□□□ -0.37
UPF1-209ENST00000600310 HERC2O95714 4834 aa12.73□□□□□ -0.37
UPF1-209ENST00000600310 USP17L23D6RBM5 183 aa12.72□□□□□ -0.37
UPF1-209ENST00000600310 XCL1P47992 114 aa12.72□□□□□ -0.37
UPF1-209ENST00000600310 FOXI1Q12951 378 aa12.72□□□□□ -0.37
UPF1-209ENST00000600310 ERASQ7Z444 233 aa12.72□□□□□ -0.37
UPF1-209ENST00000600310 C14orf177Q52M58 125 aa12.71□□□□□ -0.37
UPF1-209ENST00000600310 CD164L2Q6UWJ8 174 aa12.71□□□□□ -0.37
UPF1-209ENST00000600310 Q6ZN92 141 aa12.71□□□□□ -0.37
UPF1-209ENST00000600310 SCGB3A1Q96QR1 104 aa12.71□□□□□ -0.37
UPF1-209ENST00000600310 A0A096LNJ9 63 aa12.7□□□□□ -0.38
UPF1-209ENST00000600310 IFITM10A6NMD0 228 aa12.7□□□□□ -0.38
UPF1-209ENST00000600310 PAPPA-AS1Q5QFB9 102 aa12.7□□□□□ -0.38
UPF1-209ENST00000600310 CDPF1Q6NVV7 123 aa12.7□□□□□ -0.38
UPF1-209ENST00000600310 TEX43Q6ZNM6 134 aa12.7□□□□□ -0.38
UPF1-209ENST00000600310 NTN5Q8WTR8 489 aaPredicted RBP12.7□□□□□ -0.38
UPF1-209ENST00000600310 CHCHD1Q96BP2 118 aaKnown RBP12.7□□□□□ -0.38
UPF1-209ENST00000600310 AMELXQ99217 191 aa12.7□□□□□ -0.38
UPF1-209ENST00000600310 VCX2Q9H322 139 aa12.7□□□□□ -0.38
UPF1-209ENST00000600310 FUSP35637 526 aaKnown RBP eCLIP12.69□□□□□ -0.38
UPF1-209ENST00000600310 BAGE3Q86Y29 109 aa12.69□□□□□ -0.38
UPF1-209ENST00000600310 C16orf90A8MZG2 172 aa12.68□□□□□ -0.38
UPF1-209ENST00000600310 HBDP02042 147 aa12.68□□□□□ -0.38
UPF1-209ENST00000600310 LINC00173Q6ZV60 143 aa12.68□□□□□ -0.38
UPF1-209ENST00000600310 C2orf88Q9BSF0 95 aa12.68□□□□□ -0.38
UPF1-209ENST00000600310 PMCHL1Q16048 86 aa12.67□□□□□ -0.38
UPF1-209ENST00000600310 ZC2HC1BQ5TFG8 222 aa12.67□□□□□ -0.38
UPF1-209ENST00000600310 CFAP161Q6P656 301 aa12.67□□□□□ -0.38
UPF1-209ENST00000600310 IGLV5-52A0A0A0MRZ9 124 aa12.66□□□□□ -0.38
UPF1-209ENST00000600310 UBE2D1P51668 147 aa12.66□□□□□ -0.38
UPF1-209ENST00000600310 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.65□□□□□ -0.38
UPF1-209ENST00000600310 PRSS1P07477 247 aa12.65□□□□□ -0.38
UPF1-209ENST00000600310 PDZD11Q5EBL8 140 aa12.65□□□□□ -0.38
UPF1-209ENST00000600310 C15orf56Q8N910 161 aa12.65□□□□□ -0.38
UPF1-209ENST00000600310 DNAH11Q96DT5 4516 aa12.64□□□□□ -0.39
UPF1-209ENST00000600310 LINC00242Q5T6M2 205 aa12.64□□□□□ -0.39
UPF1-209ENST00000600310 PKD1P98161 4303 aa12.64□□□□□ -0.39
UPF1-209ENST00000600310 IGHV3OR16-9A0A0B4J2B5 98 aa12.63□□□□□ -0.39
UPF1-209ENST00000600310 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.63□□□□□ -0.39
UPF1-209ENST00000600310 COX7A2LO14548 114 aa12.63□□□□□ -0.39
UPF1-209ENST00000600310 HSBP1O75506 76 aa12.63□□□□□ -0.39
UPF1-209ENST00000600310 IGHV1-58A0A0C4DH39 117 aa12.62□□□□□ -0.39
UPF1-209ENST00000600310 hDV102S1A0JD36 115 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms