RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 ANGP03950 147 aaKnown RBP6.93□□□□□ -1.3
VRK3-214ENST00000598553 DDTP30046 118 aa6.93□□□□□ -1.3
VRK3-214ENST00000598553 FOXA3P55318 350 aaPredicted RBP6.93□□□□□ -1.3
VRK3-214ENST00000598553 KRTAP10-4P60372 401 aaPredicted RBP6.93□□□□□ -1.3
VRK3-214ENST00000598553 RBX1P62877 108 aa6.93□□□□□ -1.3
VRK3-214ENST00000598553 CACNG7P62955 275 aa6.93□□□□□ -1.3
VRK3-214ENST00000598553 C1orf43Q9BWL3 253 aa6.93□□□□□ -1.3
VRK3-214ENST00000598553 IGLV4-60A0A075B6I1 120 aa6.92□□□□□ -1.3
VRK3-214ENST00000598553 TRAV26-2A0A0B4J265 109 aa6.92□□□□□ -1.3
VRK3-214ENST00000598553 F2Z2F3 143 aa6.92□□□□□ -1.3
VRK3-214ENST00000598553 H7C1H1 209 aa6.92□□□□□ -1.3
VRK3-214ENST00000598553 SCGB1D1O95968 90 aa6.92□□□□□ -1.3
VRK3-214ENST00000598553 NTF3P20783 257 aa6.92□□□□□ -1.3
VRK3-214ENST00000598553 CTRLP40313 264 aa6.92□□□□□ -1.3
VRK3-214ENST00000598553 LBHQ53QV2 105 aaPredicted RBP6.92□□□□□ -1.3
VRK3-214ENST00000598553 LINC00528Q8N1L1 170 aa6.92□□□□□ -1.3
VRK3-214ENST00000598553 C20orf203Q8NBC4 194 aa6.92□□□□□ -1.3
VRK3-214ENST00000598553 NUP35Q8NFH5 326 aa6.92□□□□□ -1.3
VRK3-214ENST00000598553 GTSF1Q8WW33 167 aa6.92□□□□□ -1.3
VRK3-214ENST00000598553 DMBT1Q9UGM3 2413 aaPredicted RBP6.91□□□□□ -1.3
VRK3-214ENST00000598553 TRBV25-1A0A075B6N4 114 aa6.91□□□□□ -1.3
VRK3-214ENST00000598553 USP17L23D6RBM5 183 aa6.91□□□□□ -1.3
VRK3-214ENST00000598553 PANO1I0J062 215 aa6.91□□□□□ -1.3
VRK3-214ENST00000598553 SERF1AO75920 110 aa6.91□□□□□ -1.3
VRK3-214ENST00000598553 GAS8-AS1O95177 125 aa6.91□□□□□ -1.3
VRK3-214ENST00000598553 PRSS1P07477 247 aa6.91□□□□□ -1.3
VRK3-214ENST00000598553 HBBP68871 147 aa6.91□□□□□ -1.3
VRK3-214ENST00000598553 MIAQ16674 131 aa6.91□□□□□ -1.3
VRK3-214ENST00000598553 MRPL54Q6P161 138 aaKnown RBP6.91□□□□□ -1.3
VRK3-214ENST00000598553 PRR34Q9NV39 138 aa6.91□□□□□ -1.3
VRK3-214ENST00000598553 IGLV10-54A0A075B6I4 117 aa6.9□□□□□ -1.3
VRK3-214ENST00000598553 IGHV1-24A0A0C4DH33 117 aa6.9□□□□□ -1.3
VRK3-214ENST00000598553 A0A1B0GW15 77 aa6.9□□□□□ -1.3
VRK3-214ENST00000598553 A0A1B0GXF2 115 aa6.9□□□□□ -1.3
VRK3-214ENST00000598553 HIGD1CA8MV81 97 aa6.9□□□□□ -1.3
VRK3-214ENST00000598553 RAB4AP20338 218 aa6.9□□□□□ -1.3
VRK3-214ENST00000598553 C14orf177Q52M58 125 aa6.9□□□□□ -1.3
VRK3-214ENST00000598553 LINC00269Q8N2A0 174 aa6.9□□□□□ -1.3
VRK3-214ENST00000598553 RPL39LQ96EH5 51 aaKnown RBP6.9□□□□□ -1.3
VRK3-214ENST00000598553 CNFNQ9BYD5 112 aa6.9□□□□□ -1.3
VRK3-214ENST00000598553 DPH3P1Q9H4G8 78 aa6.9□□□□□ -1.3
VRK3-214ENST00000598553 MRPL52Q86TS9 123 aaKnown RBP6.89□□□□□ -1.31
VRK3-214ENST00000598553 ZNF664Q8N3J9 261 aa6.89□□□□□ -1.31
VRK3-214ENST00000598553 GATD1Q8NB37 220 aa6.89□□□□□ -1.31
VRK3-214ENST00000598553 CIRBP-AS1Q8TBR5 109 aa6.89□□□□□ -1.31
VRK3-214ENST00000598553 NUPR1O60356 82 aa6.88□□□□□ -1.31
VRK3-214ENST00000598553 LINC00310P59036 64 aa6.88□□□□□ -1.31
VRK3-214ENST00000598553 PGLYRP4Q96LB8 373 aa6.88□□□□□ -1.31
VRK3-214ENST00000598553 PRO1933Q9H354 126 aa6.88□□□□□ -1.31
VRK3-214ENST00000598553 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.88□□□□□ -1.31
VRK3-214ENST00000598553 SLPIP03973 132 aa6.87□□□□□ -1.31
VRK3-214ENST00000598553 PLA2G1BP04054 148 aaKnown RBP6.87□□□□□ -1.31
VRK3-214ENST00000598553 AMTP48728 403 aa6.87□□□□□ -1.31
VRK3-214ENST00000598553 HNRNPA3P51991 378 aaKnown RBP6.87□□□□□ -1.31
VRK3-214ENST00000598553 REG3AQ06141 175 aa6.87□□□□□ -1.31
VRK3-214ENST00000598553 RIGQ13278 110 aa6.87□□□□□ -1.31
VRK3-214ENST00000598553 TWIST1Q15672 202 aa6.87□□□□□ -1.31
VRK3-214ENST00000598553 KIAA1644Q3SXP7 199 aa6.87□□□□□ -1.31
VRK3-214ENST00000598553 TEX43Q6ZNM6 134 aa6.87□□□□□ -1.31
VRK3-214ENST00000598553 C18orf32Q8TCD1 76 aa6.87□□□□□ -1.31
VRK3-214ENST00000598553 BORCS7Q96B45 105 aa6.87□□□□□ -1.31
VRK3-214ENST00000598553 C14orf144Q96I85 54 aa6.87□□□□□ -1.31
VRK3-214ENST00000598553 ALKBH7Q9BT30 221 aaPredicted RBP6.87□□□□□ -1.31
VRK3-214ENST00000598553 TMEM243Q9BU79 118 aa6.87□□□□□ -1.31
VRK3-214ENST00000598553 CHAC1Q9BUX1 264 aa6.87□□□□□ -1.31
VRK3-214ENST00000598553 HSBP1O75506 76 aa6.86□□□□□ -1.31
VRK3-214ENST00000598553 PMCHP20382 165 aa6.86□□□□□ -1.31
VRK3-214ENST00000598553 CAMPP49913 170 aa6.86□□□□□ -1.31
VRK3-214ENST00000598553 CHCHD1Q96BP2 118 aaKnown RBP6.86□□□□□ -1.31
VRK3-214ENST00000598553 VAMP8Q9BV40 100 aa6.86□□□□□ -1.31
VRK3-214ENST00000598553 PKHD1L1Q86WI1 4243 aa6.85□□□□□ -1.31
VRK3-214ENST00000598553 A0A1B0GUT8 65 aa6.85□□□□□ -1.31
VRK3-214ENST00000598553 A0A1B0GUV1 79 aa6.85□□□□□ -1.31
VRK3-214ENST00000598553 COTL1Q14019 142 aa6.85□□□□□ -1.31
VRK3-214ENST00000598553 PMCHL1Q16048 86 aa6.85□□□□□ -1.31
VRK3-214ENST00000598553 C2orf88Q9BSF0 95 aa6.85□□□□□ -1.31
VRK3-214ENST00000598553 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.84□□□□□ -1.31
VRK3-214ENST00000598553 C20orf202A1L168 122 aa6.84□□□□□ -1.31
VRK3-214ENST00000598553 IGKV2-29A2NJV5 120 aaPredicted RBP6.84□□□□□ -1.31
VRK3-214ENST00000598553 UBE2L6O14933 153 aa6.84□□□□□ -1.31
VRK3-214ENST00000598553 CHTF8P0CG12 524 aa6.84□□□□□ -1.31
VRK3-214ENST00000598553 KRTDAPP60985 99 aa6.84□□□□□ -1.31
VRK3-214ENST00000598553 RNF185Q96GF1 192 aa6.84□□□□□ -1.31
VRK3-214ENST00000598553 TRAV8-4A0A0B4J246 113 aa6.83□□□□□ -1.32
VRK3-214ENST00000598553 IGKV3OR2-268A0A0C4DH90 116 aa6.83□□□□□ -1.32
VRK3-214ENST00000598553 DGAT2L7PQ6IED9 249 aa6.83□□□□□ -1.32
VRK3-214ENST00000598553 SMIM15Q7Z3B0 74 aa6.83□□□□□ -1.32
VRK3-214ENST00000598553 C15orf56Q8N910 161 aa6.83□□□□□ -1.32
VRK3-214ENST00000598553 C9orf163Q8N9P6 203 aa6.83□□□□□ -1.32
VRK3-214ENST00000598553 MIEN1Q9BRT3 115 aa6.83□□□□□ -1.32
VRK3-214ENST00000598553 LRP1Q07954 4544 aaKnown RBP6.82□□□□□ -1.32
VRK3-214ENST00000598553 M0R143 59 aa6.82□□□□□ -1.32
VRK3-214ENST00000598553 RNASEKQ6P5S7 137 aaKnown RBP6.82□□□□□ -1.32
VRK3-214ENST00000598553 SDIM1Q6ZPB5 146 aa6.82□□□□□ -1.32
VRK3-214ENST00000598553 SDHAF1A6NFY7 115 aa6.81□□□□□ -1.32
VRK3-214ENST00000598553 SMKR1H3BMG3 65 aa6.81□□□□□ -1.32
VRK3-214ENST00000598553 NCR2O95944 276 aa6.81□□□□□ -1.32
VRK3-214ENST00000598553 C3orf79P0CE67 100 aa6.81□□□□□ -1.32
VRK3-214ENST00000598553 CNBPP62633 177 aaKnown RBP6.81□□□□□ -1.32
VRK3-214ENST00000598553 hDV102S1A0JD36 115 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms