RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 ZNF664Q8N3J9 261 aa10.49□□□□□ -0.73
TRIM28-209ENST00000597423 MUC7Q8TAX7 377 aa10.49□□□□□ -0.73
TRIM28-209ENST00000597423 BAALCQ8WXS3 180 aa10.49□□□□□ -0.73
TRIM28-209ENST00000597423 STAB2Q8WWQ8 2551 aa10.48□□□□□ -0.73
TRIM28-209ENST00000597423 CST9LQ9H4G1 147 aa10.48□□□□□ -0.73
TRIM28-209ENST00000597423 CDC42SE2Q9NRR3 84 aa10.48□□□□□ -0.73
TRIM28-209ENST00000597423 APLNQ9ULZ1 77 aa10.48□□□□□ -0.73
TRIM28-209ENST00000597423 PRSS29PA6NIE9 313 aa10.47□□□□□ -0.73
TRIM28-209ENST00000597423 RBX1P62877 108 aa10.47□□□□□ -0.73
TRIM28-209ENST00000597423 JOSD1Q15040 202 aaPredicted RBP10.47□□□□□ -0.73
TRIM28-209ENST00000597423 LGALS9CQ6DKI2 356 aa10.47□□□□□ -0.73
TRIM28-209ENST00000597423 MRPS16Q9Y3D3 137 aaKnown RBP10.47□□□□□ -0.73
TRIM28-209ENST00000597423 FBN3Q75N90 2809 aa10.46□□□□□ -0.73
TRIM28-209ENST00000597423 AMELXQ99217 191 aa10.46□□□□□ -0.73
TRIM28-209ENST00000597423 OPRPNQ99935 248 aaPredicted RBP10.46□□□□□ -0.73
TRIM28-209ENST00000597423 CHTOPQ9Y3Y2 248 aaKnown RBP10.46□□□□□ -0.73
TRIM28-209ENST00000597423 PRKDCP78527 4128 aaKnown RBP10.46□□□□□ -0.74
TRIM28-209ENST00000597423 LINC01545Q5VT33 79 aa10.45□□□□□ -0.74
TRIM28-209ENST00000597423 UBE2DNLQ8IWF7 75 aa10.45□□□□□ -0.74
TRIM28-209ENST00000597423 LINC00588Q9Y4M8 146 aa10.45□□□□□ -0.74
TRIM28-209ENST00000597423 CCL25O15444 150 aa10.44□□□□□ -0.74
TRIM28-209ENST00000597423 PLNP26678 52 aa10.44□□□□□ -0.74
TRIM28-209ENST00000597423 SEC11AP67812 179 aa10.44□□□□□ -0.74
TRIM28-209ENST00000597423 MPV17L2Q567V2 206 aa10.44□□□□□ -0.74
TRIM28-209ENST00000597423 ZFAND6Q6FIF0 208 aa10.44□□□□□ -0.74
TRIM28-209ENST00000597423 Q6ZUT4 128 aa10.44□□□□□ -0.74
TRIM28-209ENST00000597423 IGLV4-60A0A075B6I1 120 aa10.43□□□□□ -0.74
TRIM28-209ENST00000597423 TRAV9-2A0A087WT02 112 aa10.43□□□□□ -0.74
TRIM28-209ENST00000597423 F8VRH5 84 aa10.43□□□□□ -0.74
TRIM28-209ENST00000597423 ANGP03950 147 aaKnown RBP10.43□□□□□ -0.74
TRIM28-209ENST00000597423 Q8N976 141 aa10.43□□□□□ -0.74
TRIM28-209ENST00000597423 UPK3BQ9BT76 320 aa10.43□□□□□ -0.74
TRIM28-209ENST00000597423 SIVA1O15304 175 aa10.42□□□□□ -0.74
TRIM28-209ENST00000597423 DPM2O94777 84 aa10.42□□□□□ -0.74
TRIM28-209ENST00000597423 ODF1Q14990 250 aa10.42□□□□□ -0.74
TRIM28-209ENST00000597423 LINC01556Q5JQF7 62 aa10.42□□□□□ -0.74
TRIM28-209ENST00000597423 C3orf84H3BNL1 204 aa10.41□□□□□ -0.74
TRIM28-209ENST00000597423 K7EP13 123 aa10.41□□□□□ -0.74
TRIM28-209ENST00000597423 IGKCP01834 107 aa10.41□□□□□ -0.74
TRIM28-209ENST00000597423 SMIM6P0DI80 62 aa10.41□□□□□ -0.74
TRIM28-209ENST00000597423 SS18Q15532 418 aa10.41□□□□□ -0.74
TRIM28-209ENST00000597423 WFDC10BQ8IUB3 73 aa10.41□□□□□ -0.74
TRIM28-209ENST00000597423 FAM104AQ969W3 186 aa10.41□□□□□ -0.74
TRIM28-209ENST00000597423 MRPL35Q9NZE8 188 aaKnown RBP10.41□□□□□ -0.74
TRIM28-209ENST00000597423 HSBP1L1C9JCN9 74 aa10.4□□□□□ -0.74
TRIM28-209ENST00000597423 IGHV3-30P01768 117 aa10.4□□□□□ -0.74
TRIM28-209ENST00000597423 IGHV3-33P01772 117 aa10.4□□□□□ -0.74
TRIM28-209ENST00000597423 DNAH10OSP0CZ25 163 aa10.4□□□□□ -0.74
TRIM28-209ENST00000597423 IGHV3-30-3P0DP02 117 aa10.4□□□□□ -0.74
TRIM28-209ENST00000597423 IGHV3-30-5P0DP03 117 aa10.4□□□□□ -0.74
TRIM28-209ENST00000597423 RNASE13Q5GAN3 156 aaKnown RBP10.4□□□□□ -0.74
TRIM28-209ENST00000597423 PYY3Q5JQD4 70 aa10.4□□□□□ -0.74
TRIM28-209ENST00000597423 LINC00269Q8N2A0 174 aa10.4□□□□□ -0.74
TRIM28-209ENST00000597423 GEMIN7Q9H840 131 aaKnown RBP10.4□□□□□ -0.74
TRIM28-209ENST00000597423 TRAV13-1A0A0B4J241 112 aa10.39□□□□□ -0.75
TRIM28-209ENST00000597423 TINCRA0A1B0GVN0 87 aa10.39□□□□□ -0.75
TRIM28-209ENST00000597423 UBE2D1P51668 147 aa10.39□□□□□ -0.75
TRIM28-209ENST00000597423 S100A12P80511 92 aa10.39□□□□□ -0.75
TRIM28-209ENST00000597423 ZC2HC1BQ5TFG8 222 aa10.39□□□□□ -0.75
TRIM28-209ENST00000597423 C10orf126Q8N4M7 172 aa10.39□□□□□ -0.75
TRIM28-209ENST00000597423 PMCHL2Q9BQD1 86 aa10.39□□□□□ -0.75
TRIM28-209ENST00000597423 Q9H8V8 135 aa10.39□□□□□ -0.75
TRIM28-209ENST00000597423 KLK12Q9UKR0 248 aa10.39□□□□□ -0.75
TRIM28-209ENST00000597423 IGKV3OR2-268A0A0C4DH90 116 aa10.38□□□□□ -0.75
TRIM28-209ENST00000597423 CRPP02741 224 aa10.38□□□□□ -0.75
TRIM28-209ENST00000597423 IGLC3P0DOY3 106 aa10.38□□□□□ -0.75
TRIM28-209ENST00000597423 HERVK_113P63121 156 aa10.38□□□□□ -0.75
TRIM28-209ENST00000597423 REG3AQ06141 175 aa10.38□□□□□ -0.75
TRIM28-209ENST00000597423 NFE4Q86UQ8 179 aa10.38□□□□□ -0.75
TRIM28-209ENST00000597423 TRAV8-4A0A0B4J246 113 aa10.37□□□□□ -0.75
TRIM28-209ENST00000597423 A0A0J9YXV3 536 aa10.37□□□□□ -0.75
TRIM28-209ENST00000597423 LINC00959A0A1B0GUT2 108 aa10.37□□□□□ -0.75
TRIM28-209ENST00000597423 FAM19A3Q7Z5A8 133 aa10.37□□□□□ -0.75
TRIM28-209ENST00000597423 H3BRM9 83 aa10.36□□□□□ -0.75
TRIM28-209ENST00000597423 PRR34Q9NV39 138 aa10.36□□□□□ -0.75
TRIM28-209ENST00000597423 IGLV4-69A0A075B6H9 119 aa10.35□□□□□ -0.75
TRIM28-209ENST00000597423 HERVK_113P61574 105 aa10.35□□□□□ -0.75
TRIM28-209ENST00000597423 MIAQ16674 131 aa10.35□□□□□ -0.75
TRIM28-209ENST00000597423 TMEM170BQ5T4T1 132 aa10.35□□□□□ -0.75
TRIM28-209ENST00000597423 CHAC1Q9BUX1 264 aa10.35□□□□□ -0.75
TRIM28-209ENST00000597423 TRAV8-3A0A0A6YYJ7 113 aa10.34□□□□□ -0.75
TRIM28-209ENST00000597423 LINC00242Q5T6M2 205 aa10.34□□□□□ -0.75
TRIM28-209ENST00000597423 ATOH7Q8N100 152 aa10.34□□□□□ -0.75
TRIM28-209ENST00000597423 UBE2WQ96B02 151 aa10.34□□□□□ -0.75
TRIM28-209ENST00000597423 VAMP8Q9BV40 100 aa10.34□□□□□ -0.75
TRIM28-209ENST00000597423 C11orf86A6NJI1 115 aa10.33□□□□□ -0.76
TRIM28-209ENST00000597423 CASC10Q5T4H9 136 aa10.33□□□□□ -0.76
TRIM28-209ENST00000597423 Q8N3U1 123 aa10.33□□□□□ -0.76
TRIM28-209ENST00000597423 LINC00469Q8N7U9 141 aa10.33□□□□□ -0.76
TRIM28-209ENST00000597423 IBA57-AS1B1ANH7 110 aa10.32□□□□□ -0.76
TRIM28-209ENST00000597423 TTC32Q5I0X7 151 aa10.32□□□□□ -0.76
TRIM28-209ENST00000597423 CLPSL2Q6UWE3 100 aa10.32□□□□□ -0.76
TRIM28-209ENST00000597423 ENHOQ6UWT2 76 aa10.32□□□□□ -0.76
TRIM28-209ENST00000597423 RMI2Q96E14 147 aa10.32□□□□□ -0.76
TRIM28-209ENST00000597423 C12orf57Q99622 126 aa10.32□□□□□ -0.76
TRIM28-209ENST00000597423 CD164L2Q6UWJ8 174 aa10.31□□□□□ -0.76
TRIM28-209ENST00000597423 LINC00518Q8N0U6 118 aa10.31□□□□□ -0.76
TRIM28-209ENST00000597423 CHCHD10Q8WYQ3 142 aaPredicted RBP10.31□□□□□ -0.76
TRIM28-209ENST00000597423 IGLV5-45A0A087WSX0 123 aa10.3□□□□□ -0.76
TRIM28-209ENST00000597423 ZNF22P17026 224 aaPredicted RBP10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms