RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 TMEM70Q9BUB7 260 aa6.86□□□□□ -1.31
LIG1-213ENST00000596672 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.85□□□□□ -1.31
LIG1-213ENST00000596672 TRBV7-3A0A075B6L6 115 aa6.85□□□□□ -1.31
LIG1-213ENST00000596672 M0R143 59 aa6.85□□□□□ -1.31
LIG1-213ENST00000596672 KRTAP10-4P60372 401 aaPredicted RBP6.85□□□□□ -1.31
LIG1-213ENST00000596672 KRTAP26-1Q6PEX3 210 aa6.85□□□□□ -1.31
LIG1-213ENST00000596672 AMN1Q8IY45 258 aa6.85□□□□□ -1.31
LIG1-213ENST00000596672 CNFNQ9BYD5 112 aa6.85□□□□□ -1.31
LIG1-213ENST00000596672 TRBV6-8A0A0A6YYG3 113 aa6.84□□□□□ -1.31
LIG1-213ENST00000596672 TRAV8-3A0A0A6YYJ7 113 aa6.84□□□□□ -1.31
LIG1-213ENST00000596672 TRBV10-1A0A0K0K1A3 114 aa6.84□□□□□ -1.31
LIG1-213ENST00000596672 MRPL51Q4U2R6 128 aaKnown RBP6.84□□□□□ -1.31
LIG1-213ENST00000596672 MPV17L2Q567V2 206 aa6.84□□□□□ -1.31
LIG1-213ENST00000596672 FAM104BQ5XKR9 115 aa6.84□□□□□ -1.31
LIG1-213ENST00000596672 SMIM15Q7Z3B0 74 aa6.84□□□□□ -1.31
LIG1-213ENST00000596672 Q8N976 141 aa6.84□□□□□ -1.31
LIG1-213ENST00000596672 UBE2WQ96B02 151 aa6.84□□□□□ -1.31
LIG1-213ENST00000596672 ALKBH7Q9BT30 221 aaPredicted RBP6.84□□□□□ -1.31
LIG1-213ENST00000596672 TMEM191AQ9H0A3 160 aa6.84□□□□□ -1.31
LIG1-213ENST00000596672 RAB4AP20338 218 aa6.83□□□□□ -1.32
LIG1-213ENST00000596672 RPL36AP83881 106 aaKnown RBP6.83□□□□□ -1.32
LIG1-213ENST00000596672 RPL36ALQ969Q0 106 aaKnown RBP6.83□□□□□ -1.32
LIG1-213ENST00000596672 RNF185Q96GF1 192 aa6.83□□□□□ -1.32
LIG1-213ENST00000596672 TM2D2Q9BX73 214 aa6.83□□□□□ -1.32
LIG1-213ENST00000596672 IGKV2D-24A0A075B6R9 120 aa6.82□□□□□ -1.32
LIG1-213ENST00000596672 SMKR1H3BMG3 65 aa6.82□□□□□ -1.32
LIG1-213ENST00000596672 M0QY20 66 aa6.82□□□□□ -1.32
LIG1-213ENST00000596672 ZNF56Q15929 161 aa6.82□□□□□ -1.32
LIG1-213ENST00000596672 TEX43Q6ZNM6 134 aa6.82□□□□□ -1.32
LIG1-213ENST00000596672 DEFB104AQ8WTQ1 72 aa6.82□□□□□ -1.32
LIG1-213ENST00000596672 D6R8Y8 96 aa6.81□□□□□ -1.32
LIG1-213ENST00000596672 NUPR1O60356 82 aa6.81□□□□□ -1.32
LIG1-213ENST00000596672 SERF1AO75920 110 aa6.81□□□□□ -1.32
LIG1-213ENST00000596672 NCR2O95944 276 aa6.81□□□□□ -1.32
LIG1-213ENST00000596672 CKS2P33552 79 aa6.81□□□□□ -1.32
LIG1-213ENST00000596672 SUMO4Q6EEV6 95 aa6.81□□□□□ -1.32
LIG1-213ENST00000596672 SCXQ7RTU7 201 aa6.81□□□□□ -1.32
LIG1-213ENST00000596672 C18orf32Q8TCD1 76 aa6.81□□□□□ -1.32
LIG1-213ENST00000596672 MIEN1Q9BRT3 115 aa6.81□□□□□ -1.32
LIG1-213ENST00000596672 VAMP8Q9BV40 100 aa6.81□□□□□ -1.32
LIG1-213ENST00000596672 A0A1B0GV90 55 aa6.8□□□□□ -1.32
LIG1-213ENST00000596672 GAS8-AS1O95177 125 aa6.8□□□□□ -1.32
LIG1-213ENST00000596672 MGPP08493 103 aa6.8□□□□□ -1.32
LIG1-213ENST00000596672 RBX1P62877 108 aa6.8□□□□□ -1.32
LIG1-213ENST00000596672 PRELID3AQ96N28 172 aa6.8□□□□□ -1.32
LIG1-213ENST00000596672 AP1S3Q96PC3 154 aa6.8□□□□□ -1.32
LIG1-213ENST00000596672 A0A087WX48 190 aa6.79□□□□□ -1.32
LIG1-213ENST00000596672 TRAV26-2A0A0B4J265 109 aa6.79□□□□□ -1.32
LIG1-213ENST00000596672 LOC389332A0A1B0GUA5 103 aa6.79□□□□□ -1.32
LIG1-213ENST00000596672 C20orf202A1L168 122 aa6.79□□□□□ -1.32
LIG1-213ENST00000596672 TMEM262E9PQX1 116 aa6.79□□□□□ -1.32
LIG1-213ENST00000596672 F5H697 171 aa6.79□□□□□ -1.32
LIG1-213ENST00000596672 PANO1I0J062 215 aa6.79□□□□□ -1.32
LIG1-213ENST00000596672 TCAPO15273 167 aa6.79□□□□□ -1.32
LIG1-213ENST00000596672 SMIM17P0DL12 118 aa6.79□□□□□ -1.32
LIG1-213ENST00000596672 GAGE6Q13070 117 aa6.79□□□□□ -1.32
LIG1-213ENST00000596672 PMCHL1Q16048 86 aa6.79□□□□□ -1.32
LIG1-213ENST00000596672 CLPSL2Q6UWE3 100 aa6.79□□□□□ -1.32
LIG1-213ENST00000596672 ORMDL3Q8N138 153 aa6.79□□□□□ -1.32
LIG1-213ENST00000596672 CHCHD7Q9BUK0 85 aa6.79□□□□□ -1.32
LIG1-213ENST00000596672 DPH3P1Q9H4G8 78 aa6.79□□□□□ -1.32
LIG1-213ENST00000596672 PRR34Q9NV39 138 aa6.79□□□□□ -1.32
LIG1-213ENST00000596672 NPYP01303 97 aa6.78□□□□□ -1.32
LIG1-213ENST00000596672 PPBPP02775 128 aa6.78□□□□□ -1.32
LIG1-213ENST00000596672 PRSS1P07477 247 aa6.78□□□□□ -1.32
LIG1-213ENST00000596672 AMTP48728 403 aa6.78□□□□□ -1.32
LIG1-213ENST00000596672 LINC00310P59036 64 aa6.78□□□□□ -1.32
LIG1-213ENST00000596672 LINC00528Q8N1L1 170 aa6.78□□□□□ -1.32
LIG1-213ENST00000596672 C20orf203Q8NBC4 194 aa6.78□□□□□ -1.32
LIG1-213ENST00000596672 CIRBP-AS1Q8TBR5 109 aa6.78□□□□□ -1.32
LIG1-213ENST00000596672 UBR4Q5T4S7 5183 aa6.77□□□□□ -1.33
LIG1-213ENST00000596672 IGLV4-60A0A075B6I1 120 aa6.77□□□□□ -1.33
LIG1-213ENST00000596672 USP17L23D6RBM5 183 aa6.77□□□□□ -1.33
LIG1-213ENST00000596672 FAM229AH3BQW9 127 aa6.77□□□□□ -1.33
LIG1-213ENST00000596672 TNFRSF6BO95407 300 aa6.77□□□□□ -1.33
LIG1-213ENST00000596672 PMCHP20382 165 aa6.77□□□□□ -1.33
LIG1-213ENST00000596672 RNASEKQ6P5S7 137 aaKnown RBP6.77□□□□□ -1.33
LIG1-213ENST00000596672 LINC00269Q8N2A0 174 aa6.77□□□□□ -1.33
LIG1-213ENST00000596672 PRSS3P2Q8NHM4 247 aa6.77□□□□□ -1.33
LIG1-213ENST00000596672 MRAP2Q96G30 205 aa6.77□□□□□ -1.33
LIG1-213ENST00000596672 CHCHD5Q9BSY4 110 aa6.77□□□□□ -1.33
LIG1-213ENST00000596672 ANGP03950 147 aaKnown RBP6.76□□□□□ -1.33
LIG1-213ENST00000596672 SLPIP03973 132 aa6.76□□□□□ -1.33
LIG1-213ENST00000596672 IFI27P40305 119 aaPredicted RBP6.76□□□□□ -1.33
LIG1-213ENST00000596672 KRTDAPP60985 99 aa6.76□□□□□ -1.33
LIG1-213ENST00000596672 NRACQ8N912 160 aa6.76□□□□□ -1.33
LIG1-213ENST00000596672 URB1-AS1Q96HZ7 61 aa6.76□□□□□ -1.33
LIG1-213ENST00000596672 CHAC1Q9BUX1 264 aa6.76□□□□□ -1.33
LIG1-213ENST00000596672 SNHG12Q9BXW3 62 aa6.76□□□□□ -1.33
LIG1-213ENST00000596672 UQCR10Q9UDW1 63 aa6.76□□□□□ -1.33
LIG1-213ENST00000596672 COX11Q9Y6N1 276 aa6.76□□□□□ -1.33
LIG1-213ENST00000596672 HSBP1O75506 76 aa6.75□□□□□ -1.33
LIG1-213ENST00000596672 LINC00614P0C842 121 aa6.75□□□□□ -1.33
LIG1-213ENST00000596672 HNRNPA3P51991 378 aaKnown RBP6.75□□□□□ -1.33
LIG1-213ENST00000596672 FA2HQ7L5A8 372 aa6.75□□□□□ -1.33
LIG1-213ENST00000596672 FAM19A2Q8N3H0 131 aa6.75□□□□□ -1.33
LIG1-213ENST00000596672 CHCHD1Q96BP2 118 aaKnown RBP6.75□□□□□ -1.33
LIG1-213ENST00000596672 RMI2Q96E14 147 aa6.75□□□□□ -1.33
LIG1-213ENST00000596672 RPL39LQ96EH5 51 aaKnown RBP6.75□□□□□ -1.33
LIG1-213ENST00000596672 MAP1LC3AQ9H492 121 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms