RNA–Protein interactions for RNA: ENST00000593829.5

LSM4-203, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM4, Length 1,908 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-203ENST00000593829 LINC00476Q8WZB0 136 aa13.78□□□□□ -0.2
LSM4-203ENST00000593829 PRO0461Q9UI25 63 aa13.78□□□□□ -0.2
LSM4-203ENST00000593829 M0R2P5 195 aa13.77□□□□□ -0.21
LSM4-203ENST00000593829 WFDC2Q14508 124 aa13.77□□□□□ -0.21
LSM4-203ENST00000593829 RASL10AQ92737 203 aa13.77□□□□□ -0.21
LSM4-203ENST00000593829 TRAV26-2A0A0B4J265 109 aa13.76□□□□□ -0.21
LSM4-203ENST00000593829 GAGE12HA6NDE8 117 aa13.76□□□□□ -0.21
LSM4-203ENST00000593829 LY6G6CO95867 125 aa13.75□□□□□ -0.21
LSM4-203ENST00000593829 SUMO2P61956 95 aaKnown RBP13.75□□□□□ -0.21
LSM4-203ENST00000593829 GAGE13Q4V321 117 aa13.75□□□□□ -0.21
LSM4-203ENST00000593829 LYSTQ99698 3801 aa13.75□□□□□ -0.21
LSM4-203ENST00000593829 S100A4P26447 101 aaKnown RBP13.74□□□□□ -0.21
LSM4-203ENST00000593829 ASIPP42127 132 aa13.74□□□□□ -0.21
LSM4-203ENST00000593829 C9orf85Q96MD7 179 aa13.74□□□□□ -0.21
LSM4-203ENST00000593829 SCGB3A1Q96QR1 104 aa13.74□□□□□ -0.21
LSM4-203ENST00000593829 PPP1R17O96001 155 aa13.74□□□□□ -0.21
LSM4-203ENST00000593829 RNASE3P12724 160 aaKnown RBP13.74□□□□□ -0.21
LSM4-203ENST00000593829 C15orf53Q8NAA6 179 aa13.74□□□□□ -0.21
LSM4-203ENST00000593829 LINC01549A6NIU2 74 aa13.73□□□□□ -0.21
LSM4-203ENST00000593829 H3BMG7 143 aa13.73□□□□□ -0.21
LSM4-203ENST00000593829 DPH3P1Q9H4G8 78 aa13.73□□□□□ -0.21
LSM4-203ENST00000593829 H3BVH4 76 aa13.72□□□□□ -0.21
LSM4-203ENST00000593829 POM121L12Q8N7R1 296 aa13.72□□□□□ -0.21
LSM4-203ENST00000593829 ATP6V0E2Q8NHE4 81 aa13.72□□□□□ -0.21
LSM4-203ENST00000593829 TRAV26-1A0A087WT03 109 aa13.72□□□□□ -0.21
LSM4-203ENST00000593829 TMEM238LA0A1B0GVL6 79 aa13.72□□□□□ -0.21
LSM4-203ENST00000593829 A6NJY4 79 aa13.72□□□□□ -0.21
LSM4-203ENST00000593829 IGHV3-53P01767 116 aa13.72□□□□□ -0.21
LSM4-203ENST00000593829 RPL32P62910 135 aaKnown RBP13.72□□□□□ -0.21
LSM4-203ENST00000593829 ZNF876PQ49A33 203 aa13.72□□□□□ -0.21
LSM4-203ENST00000593829 BAALCQ8WXS3 180 aa13.7□□□□□ -0.22
LSM4-203ENST00000593829 PTH2Q96A98 100 aa13.7□□□□□ -0.22
LSM4-203ENST00000593829 ALMS1Q8TCU4 4167 aa13.7□□□□□ -0.22
LSM4-203ENST00000593829 GTSF1LQ9H1H1 148 aa13.7□□□□□ -0.22
LSM4-203ENST00000593829 TRAV4A0A0B4J268 109 aa13.69□□□□□ -0.22
LSM4-203ENST00000593829 A0A0J9YY99 117 aa13.69□□□□□ -0.22
LSM4-203ENST00000593829 P0DMU3 169 aa13.69□□□□□ -0.22
LSM4-203ENST00000593829 FAM231AP0DMU4 169 aa13.69□□□□□ -0.22
LSM4-203ENST00000593829 FAM231CP0DMU5 169 aa13.69□□□□□ -0.22
LSM4-203ENST00000593829 UBE2D1P51668 147 aa13.69□□□□□ -0.22
LSM4-203ENST00000593829 ETDBQ3ZM63 59 aa13.69□□□□□ -0.22
LSM4-203ENST00000593829 H3BNG1 76 aa13.68□□□□□ -0.22
LSM4-203ENST00000593829 PAPPA-AS1Q5QFB9 102 aa13.68□□□□□ -0.22
LSM4-203ENST00000593829 C2orf66Q6UXQ4 117 aa13.68□□□□□ -0.22
LSM4-203ENST00000593829 PRADC1Q9BSG0 188 aa13.68□□□□□ -0.22
LSM4-203ENST00000593829 SACSQ9NZJ4 4579 aa13.68□□□□□ -0.22
LSM4-203ENST00000593829 NXPH4O95158 308 aa13.68□□□□□ -0.22
LSM4-203ENST00000593829 FHL2Q14192 279 aa13.68□□□□□ -0.22
LSM4-203ENST00000593829 MUC4Q99102 2169 aa13.67□□□□□ -0.22
LSM4-203ENST00000593829 TRGV4A0A0C4DH28 118 aa13.67□□□□□ -0.22
LSM4-203ENST00000593829 SH2D6Q7Z4S9 175 aa13.67□□□□□ -0.22
LSM4-203ENST00000593829 PRO0255Q9UI72 69 aa13.67□□□□□ -0.22
LSM4-203ENST00000593829 PRSS29PA6NIE9 313 aa13.66□□□□□ -0.22
LSM4-203ENST00000593829 PIK3CD-AS1Q5SR53 167 aa13.66□□□□□ -0.22
LSM4-203ENST00000593829 CYSLTR1Q9Y271 337 aa13.66□□□□□ -0.22
LSM4-203ENST00000593829 DNAH1Q9P2D7 4330 aa13.66□□□□□ -0.22
LSM4-203ENST00000593829 VSIG2Q96IQ7 327 aa13.66□□□□□ -0.22
LSM4-203ENST00000593829 PHLDA3Q9Y5J5 127 aa13.66□□□□□ -0.22
LSM4-203ENST00000593829 PAX4O43316 350 aa13.65□□□□□ -0.22
LSM4-203ENST00000593829 SMAGPQ0VAQ4 97 aa13.65□□□□□ -0.22
LSM4-203ENST00000593829 LYRM7Q5U5X0 104 aa13.65□□□□□ -0.22
LSM4-203ENST00000593829 CFAP126Q5VTH2 177 aa13.65□□□□□ -0.22
LSM4-203ENST00000593829 SYT8Q8NBV8 401 aa13.65□□□□□ -0.22
LSM4-203ENST00000593829 A0A1B0GV72 72 aa13.64□□□□□ -0.23
LSM4-203ENST00000593829 ZNF815PA8K554 130 aa13.64□□□□□ -0.23
LSM4-203ENST00000593829 RS1O15537 224 aa13.64□□□□□ -0.23
LSM4-203ENST00000593829 CRYBA4P53673 196 aa13.64□□□□□ -0.23
LSM4-203ENST00000593829 PGPEP1Q9NXJ5 209 aa13.64□□□□□ -0.23
LSM4-203ENST00000593829 UBE2D3P61077 147 aa13.64□□□□□ -0.23
LSM4-203ENST00000593829 UBE2D2P62837 147 aa13.64□□□□□ -0.23
LSM4-203ENST00000593829 RPL39LQ96EH5 51 aaKnown RBP13.64□□□□□ -0.23
LSM4-203ENST00000593829 UBE2DNLQ8IWF7 75 aa13.63□□□□□ -0.23
LSM4-203ENST00000593829 A8MWV9 139 aa13.62□□□□□ -0.23
LSM4-203ENST00000593829 HERVK_113P61574 105 aa13.62□□□□□ -0.23
LSM4-203ENST00000593829 C14orf178Q8N769 122 aaPredicted RBP13.62□□□□□ -0.23
LSM4-203ENST00000593829 FOXI1Q12951 378 aa13.62□□□□□ -0.23
LSM4-203ENST00000593829 TMEM141Q96I45 108 aa13.62□□□□□ -0.23
LSM4-203ENST00000593829 APOMO95445 188 aa13.61□□□□□ -0.23
LSM4-203ENST00000593829 CRYGDP07320 174 aa13.61□□□□□ -0.23
LSM4-203ENST00000593829 KIF25-AS1Q9Y6Z4 181 aa13.61□□□□□ -0.23
LSM4-203ENST00000593829 RYR3Q15413 4870 aa13.61□□□□□ -0.23
LSM4-203ENST00000593829 SMCPP49901 116 aaPredicted RBP13.6□□□□□ -0.23
LSM4-203ENST00000593829 RYR2Q92736 4967 aa13.6□□□□□ -0.23
LSM4-203ENST00000593829 IGLV4-69A0A075B6H9 119 aa13.6□□□□□ -0.23
LSM4-203ENST00000593829 A0A096LPF7 62 aa13.6□□□□□ -0.23
LSM4-203ENST00000593829 IGIPA6NJ69 53 aa13.6□□□□□ -0.23
LSM4-203ENST00000593829 TSPAN13O95857 204 aa13.6□□□□□ -0.23
LSM4-203ENST00000593829 CCL18P55774 89 aa13.6□□□□□ -0.23
LSM4-203ENST00000593829 LINC00315P59091 139 aa13.6□□□□□ -0.23
LSM4-203ENST00000593829 SCGB1D4Q6XE38 83 aa13.6□□□□□ -0.23
LSM4-203ENST00000593829 VCX2Q9H322 139 aa13.6□□□□□ -0.23
LSM4-203ENST00000593829 ICOSQ9Y6W8 199 aa13.6□□□□□ -0.23
LSM4-203ENST00000593829 IGHV3-73A0A0B4J1V6 119 aa13.59□□□□□ -0.23
LSM4-203ENST00000593829 MGPP08493 103 aa13.59□□□□□ -0.23
LSM4-203ENST00000593829 ZFP2Q6ZN57 461 aa13.59□□□□□ -0.23
LSM4-203ENST00000593829 PLEKHB2Q96CS7 222 aa13.59□□□□□ -0.23
LSM4-203ENST00000593829 TIMM17AQ99595 171 aa13.59□□□□□ -0.23
LSM4-203ENST00000593829 POLR2KP53803 58 aaKnown RBP13.58□□□□□ -0.23
LSM4-203ENST00000593829 SRSF9Q13242 221 aaKnown RBP eCLIP13.58□□□□□ -0.23
LSM4-203ENST00000593829 PMVKQ15126 192 aa13.58□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 132.8 ms