RNA–Protein interactions for RNA: ENST00000590347.5

CIRBP-228, Transcript of cold inducible RNA binding protein, humanhuman

TSL 2

Gene CIRBP, Length 3,117 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIRBP-228ENST00000590347 ATP5G1P05496 136 aa11.11□□□□□ -0.63
CIRBP-228ENST00000590347 C9orf139Q6ZV77 190 aa11.11□□□□□ -0.63
CIRBP-228ENST00000590347 FAM104AQ969W3 186 aa11.11□□□□□ -0.63
CIRBP-228ENST00000590347 Q9H8V8 135 aa11.11□□□□□ -0.63
CIRBP-228ENST00000590347 LRRK2Q5S007 2527 aa11.11□□□□□ -0.63
CIRBP-228ENST00000590347 COX7A2LO14548 114 aa11.11□□□□□ -0.63
CIRBP-228ENST00000590347 WIPF1O43516 503 aa11.11□□□□□ -0.63
CIRBP-228ENST00000590347 DNAL4O96015 105 aa11.11□□□□□ -0.63
CIRBP-228ENST00000590347 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.11□□□□□ -0.63
CIRBP-228ENST00000590347 LINC00846Q9NV44 126 aa11.11□□□□□ -0.63
CIRBP-228ENST00000590347 IGHV1-69P01742 117 aa11.1□□□□□ -0.63
CIRBP-228ENST00000590347 USP9YO00507 2555 aaPredicted RBP11.1□□□□□ -0.63
CIRBP-228ENST00000590347 FAM223BA6NKX1 122 aa11.1□□□□□ -0.63
CIRBP-228ENST00000590347 SPANXDQ9BXN6 97 aa11.1□□□□□ -0.63
CIRBP-228ENST00000590347 SPANXCQ9NY87 97 aa11.1□□□□□ -0.63
CIRBP-228ENST00000590347 USP17L23D6RBM5 183 aa11.09□□□□□ -0.63
CIRBP-228ENST00000590347 IGHG2P01859 326 aa11.09□□□□□ -0.63
CIRBP-228ENST00000590347 SLPIP03973 132 aa11.09□□□□□ -0.63
CIRBP-228ENST00000590347 GNLYP22749 145 aa11.09□□□□□ -0.63
CIRBP-228ENST00000590347 LINC00336Q6ZUF6 198 aa11.09□□□□□ -0.63
CIRBP-228ENST00000590347 WFDC11Q8NEX6 87 aa11.09□□□□□ -0.63
CIRBP-228ENST00000590347 TRAV23DV6A0A075B6W5 121 aa11.09□□□□□ -0.63
CIRBP-228ENST00000590347 LINC01561Q8N1V8 128 aa11.09□□□□□ -0.63
CIRBP-228ENST00000590347 LINC00308Q8TCZ7 52 aa11.09□□□□□ -0.63
CIRBP-228ENST00000590347 A0A0J9YX75 114 aa11.09□□□□□ -0.63
CIRBP-228ENST00000590347 LY6G5BQ8NDX9 201 aa11.09□□□□□ -0.63
CIRBP-228ENST00000590347 ZNF462Q96JM2 2506 aa11.08□□□□□ -0.64
CIRBP-228ENST00000590347 RPL35AP18077 110 aaKnown RBP11.08□□□□□ -0.64
CIRBP-228ENST00000590347 RPS28P62857 69 aaKnown RBP11.08□□□□□ -0.64
CIRBP-228ENST00000590347 FAM110DQ8TAY7 271 aaPredicted RBP11.08□□□□□ -0.64
CIRBP-228ENST00000590347 C19orf84I3L1E1 186 aa11.07□□□□□ -0.64
CIRBP-228ENST00000590347 NCR3O14931 201 aa11.07□□□□□ -0.64
CIRBP-228ENST00000590347 SERP2Q8N6R1 65 aa11.07□□□□□ -0.64
CIRBP-228ENST00000590347 SPINK13Q1W4C9 94 aa11.07□□□□□ -0.64
CIRBP-228ENST00000590347 WNK1Q9H4A3 2382 aa11.07□□□□□ -0.64
CIRBP-228ENST00000590347 TMEM258P61165 79 aa11.07□□□□□ -0.64
CIRBP-228ENST00000590347 C20orf197Q8N268 126 aa11.07□□□□□ -0.64
CIRBP-228ENST00000590347 A0A0U1RQV1 116 aa11.06□□□□□ -0.64
CIRBP-228ENST00000590347 COX6A2Q02221 97 aa11.06□□□□□ -0.64
CIRBP-228ENST00000590347 MRPL53Q96EL3 112 aaKnown RBP11.06□□□□□ -0.64
CIRBP-228ENST00000590347 UPK3BQ9BT76 320 aa11.06□□□□□ -0.64
CIRBP-228ENST00000590347 PRIMA1Q86XR5 153 aa11.06□□□□□ -0.64
CIRBP-228ENST00000590347 IGHV3-16A0A0C4DH30 117 aa11.05□□□□□ -0.64
CIRBP-228ENST00000590347 J3QLI3 93 aa11.05□□□□□ -0.64
CIRBP-228ENST00000590347 PFN2P35080 140 aa11.05□□□□□ -0.64
CIRBP-228ENST00000590347 A0A087WYN8 130 aa11.04□□□□□ -0.64
CIRBP-228ENST00000590347 MRPS36P82909 103 aaKnown RBP11.04□□□□□ -0.64
CIRBP-228ENST00000590347 PRB1P04280 392 aa11.04□□□□□ -0.64
CIRBP-228ENST00000590347 MALP21145 153 aa11.04□□□□□ -0.64
CIRBP-228ENST00000590347 BEAN1Q3B7T3 259 aa11.04□□□□□ -0.64
CIRBP-228ENST00000590347 CXCL5P42830 114 aa11.03□□□□□ -0.64
CIRBP-228ENST00000590347 ABCA12Q86UK0 2595 aa11.03□□□□□ -0.64
CIRBP-228ENST00000590347 RHPN1-AS1Q9BWJ2 59 aa11.03□□□□□ -0.64
CIRBP-228ENST00000590347 U3KQE9 123 aa11.03□□□□□ -0.64
CIRBP-228ENST00000590347 FAM19A1Q7Z5A9 133 aa11.02□□□□□ -0.64
CIRBP-228ENST00000590347 Q8N6K4 173 aa11.02□□□□□ -0.64
CIRBP-228ENST00000590347 LENEPQ9Y5L5 61 aa11.02□□□□□ -0.64
CIRBP-228ENST00000590347 ZFP36P26651 326 aaKnown RBP11.02□□□□□ -0.65
CIRBP-228ENST00000590347 FBXL19-AS1Q494R0 122 aa11.02□□□□□ -0.65
CIRBP-228ENST00000590347 LINC00467Q9BRT7 94 aa11.02□□□□□ -0.65
CIRBP-228ENST00000590347 SONP18583 2426 aaKnown RBP11.02□□□□□ -0.65
CIRBP-228ENST00000590347 SOCS3O14543 225 aa11.02□□□□□ -0.65
CIRBP-228ENST00000590347 TRBV6-5A0A0K0K1A5 114 aa11.01□□□□□ -0.65
CIRBP-228ENST00000590347 ODF3BA8MYP8 253 aa11.01□□□□□ -0.65
CIRBP-228ENST00000590347 RNASE1P07998 156 aaKnown RBP11.01□□□□□ -0.65
CIRBP-228ENST00000590347 ZANQ9Y493 2812 aa11.01□□□□□ -0.65
CIRBP-228ENST00000590347 GHRHP01286 108 aa11.01□□□□□ -0.65
CIRBP-228ENST00000590347 Q6ZSN1 163 aa11.01□□□□□ -0.65
CIRBP-228ENST00000590347 TMEM243Q9BU79 118 aa11.01□□□□□ -0.65
CIRBP-228ENST00000590347 SETD2Q9BYW2 2564 aaPredicted RBP11□□□□□ -0.65
CIRBP-228ENST00000590347 RPL28P46779 137 aaKnown RBP11□□□□□ -0.65
CIRBP-228ENST00000590347 USP24Q9UPU5 2620 aa11□□□□□ -0.65
CIRBP-228ENST00000590347 INAFM2P0DMQ5 153 aa11□□□□□ -0.65
CIRBP-228ENST00000590347 PTPN13Q12923 2485 aa10.99□□□□□ -0.65
CIRBP-228ENST00000590347 MINOS1Q5TGZ0 78 aa10.99□□□□□ -0.65
CIRBP-228ENST00000590347 MED14OSP0DP75 135 aa10.99□□□□□ -0.65
CIRBP-228ENST00000590347 DGAT2L7PQ6IED9 249 aa10.99□□□□□ -0.65
CIRBP-228ENST00000590347 JMJD1CQ15652 2540 aa10.99□□□□□ -0.65
CIRBP-228ENST00000590347 IGKV3OR2-268A0A0C4DH90 116 aa10.98□□□□□ -0.65
CIRBP-228ENST00000590347 LY6EQ16553 131 aa10.98□□□□□ -0.65
CIRBP-228ENST00000590347 SAA4P35542 130 aa10.98□□□□□ -0.65
CIRBP-228ENST00000590347 BPESC1Q9GZL8 116 aa10.98□□□□□ -0.65
CIRBP-228ENST00000590347 PIMREGQ9BSJ6 248 aa10.98□□□□□ -0.65
CIRBP-228ENST00000590347 KLLNB2CW77 178 aa10.97□□□□□ -0.65
CIRBP-228ENST00000590347 LECT2O14960 151 aa10.97□□□□□ -0.65
CIRBP-228ENST00000590347 C11orf71Q6IPW1 123 aa10.97□□□□□ -0.65
CIRBP-228ENST00000590347 SNURFQ9Y675 71 aa10.97□□□□□ -0.65
CIRBP-228ENST00000590347 TLN2Q9Y4G6 2542 aa10.97□□□□□ -0.65
CIRBP-228ENST00000590347 DOPEY1Q5JWR5 2465 aa10.97□□□□□ -0.65
CIRBP-228ENST00000590347 ENHOQ6UWT2 76 aa10.96□□□□□ -0.65
CIRBP-228ENST00000590347 TOMM7Q9P0U1 55 aa10.96□□□□□ -0.65
CIRBP-228ENST00000590347 PRORYQ9H606 182 aa10.96□□□□□ -0.66
CIRBP-228ENST00000590347 FAM236DA0A1B0GTK5 79 aa10.95□□□□□ -0.66
CIRBP-228ENST00000590347 FAM236CP0DP71 79 aa10.95□□□□□ -0.66
CIRBP-228ENST00000590347 LINC00337Q8N6G1 96 aa10.95□□□□□ -0.66
CIRBP-228ENST00000590347 UBE2D4Q9Y2X8 147 aa10.95□□□□□ -0.66
CIRBP-228ENST00000590347 NDUFA1O15239 70 aa10.95□□□□□ -0.66
CIRBP-228ENST00000590347 C9orf85Q96MD7 179 aa10.94□□□□□ -0.66
CIRBP-228ENST00000590347 LINC00474Q9P2X8 69 aa10.94□□□□□ -0.66
CIRBP-228ENST00000590347 BRD3OSQ6XYD6 125 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms