RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 HSBP1O75506 76 aa3.67□□□□□ -1.82
LIG3-210ENST00000588109 SERF1AO75920 110 aa3.67□□□□□ -1.82
LIG3-210ENST00000588109 TSHBP01222 138 aa3.67□□□□□ -1.82
LIG3-210ENST00000588109 LINC00694P0DN24 101 aa3.67□□□□□ -1.82
LIG3-210ENST00000588109 RPL32P62910 135 aaKnown RBP3.67□□□□□ -1.82
LIG3-210ENST00000588109 LAGE3Q14657 143 aa3.67□□□□□ -1.82
LIG3-210ENST00000588109 ORMDL2Q53FV1 153 aa3.67□□□□□ -1.82
LIG3-210ENST00000588109 KRTAP5-3Q6L8H2 238 aa3.67□□□□□ -1.82
LIG3-210ENST00000588109 CHCHD1Q96BP2 118 aaKnown RBP3.67□□□□□ -1.82
LIG3-210ENST00000588109 GTSF1LQ9H1H1 148 aa3.67□□□□□ -1.82
LIG3-210ENST00000588109 STAB2Q8WWQ8 2551 aa3.66□□□□□ -1.82
LIG3-210ENST00000588109 IGLV2-18A0A075B6J9 118 aa3.66□□□□□ -1.82
LIG3-210ENST00000588109 TRBV6-8A0A0A6YYG3 113 aa3.66□□□□□ -1.82
LIG3-210ENST00000588109 TRAV8-6A0A0B4J262 113 aa3.66□□□□□ -1.82
LIG3-210ENST00000588109 G0S2P27469 103 aa3.66□□□□□ -1.82
LIG3-210ENST00000588109 CCL18P55774 89 aa3.66□□□□□ -1.82
LIG3-210ENST00000588109 TCTAP57738 103 aa3.66□□□□□ -1.82
LIG3-210ENST00000588109 LYPD5Q6UWN5 251 aa3.66□□□□□ -1.82
LIG3-210ENST00000588109 ERASQ7Z444 233 aa3.66□□□□□ -1.82
LIG3-210ENST00000588109 UBE2DNLQ8IWF7 75 aa3.66□□□□□ -1.82
LIG3-210ENST00000588109 TMEM18Q96B42 140 aa3.66□□□□□ -1.82
LIG3-210ENST00000588109 CHCHD5Q9BSY4 110 aa3.66□□□□□ -1.82
LIG3-210ENST00000588109 TMEM243Q9BU79 118 aa3.66□□□□□ -1.82
LIG3-210ENST00000588109 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.65□□□□□ -1.83
LIG3-210ENST00000588109 IGKV2-29A2NJV5 120 aaPredicted RBP3.65□□□□□ -1.83
LIG3-210ENST00000588109 TMEM262E9PQX1 116 aa3.65□□□□□ -1.83
LIG3-210ENST00000588109 C3orf84H3BNL1 204 aa3.65□□□□□ -1.83
LIG3-210ENST00000588109 HBDP02042 147 aa3.65□□□□□ -1.83
LIG3-210ENST00000588109 S100A2P29034 98 aa3.65□□□□□ -1.83
LIG3-210ENST00000588109 GAGE6Q13070 117 aa3.65□□□□□ -1.83
LIG3-210ENST00000588109 PMCHL1Q16048 86 aa3.65□□□□□ -1.83
LIG3-210ENST00000588109 ESRGQ1W209 222 aa3.65□□□□□ -1.83
LIG3-210ENST00000588109 PDZD11Q5EBL8 140 aa3.65□□□□□ -1.83
LIG3-210ENST00000588109 LELP1Q5T871 98 aa3.65□□□□□ -1.83
LIG3-210ENST00000588109 AMMECR1LQ6DCA0 310 aa3.65□□□□□ -1.83
LIG3-210ENST00000588109 NTM-AS1Q6ZSK4 140 aa3.65□□□□□ -1.83
LIG3-210ENST00000588109 FAM19A2Q8N3H0 131 aa3.65□□□□□ -1.83
LIG3-210ENST00000588109 URB1-AS1Q96HZ7 61 aa3.65□□□□□ -1.83
LIG3-210ENST00000588109 APLNQ9ULZ1 77 aa3.65□□□□□ -1.83
LIG3-210ENST00000588109 CYSLTR1Q9Y271 337 aa3.65□□□□□ -1.83
LIG3-210ENST00000588109 A0A087WX48 190 aa3.64□□□□□ -1.83
LIG3-210ENST00000588109 A0A0U1RRA0 63 aa3.64□□□□□ -1.83
LIG3-210ENST00000588109 LINC01546A6NGU7 62 aa3.64□□□□□ -1.83
LIG3-210ENST00000588109 NUPR1O60356 82 aa3.64□□□□□ -1.83
LIG3-210ENST00000588109 ESDP10768 282 aa3.64□□□□□ -1.83
LIG3-210ENST00000588109 PKIAP61925 76 aa3.64□□□□□ -1.83
LIG3-210ENST00000588109 SNRPEP62304 92 aaKnown RBP3.64□□□□□ -1.83
LIG3-210ENST00000588109 RPL39P62891 51 aaKnown RBP3.64□□□□□ -1.83
LIG3-210ENST00000588109 SMAGPQ0VAQ4 97 aa3.64□□□□□ -1.83
LIG3-210ENST00000588109 COA6Q5JTJ3 125 aaKnown RBP3.64□□□□□ -1.83
LIG3-210ENST00000588109 C2orf66Q6UXQ4 117 aa3.64□□□□□ -1.83
LIG3-210ENST00000588109 C20orf203Q8NBC4 194 aa3.64□□□□□ -1.83
LIG3-210ENST00000588109 TMEM101Q96IK0 257 aa3.64□□□□□ -1.83
LIG3-210ENST00000588109 SCGB3A1Q96QR1 104 aa3.64□□□□□ -1.83
LIG3-210ENST00000588109 CHCHD7Q9BUK0 85 aa3.64□□□□□ -1.83
LIG3-210ENST00000588109 LINC00588Q9Y4M8 146 aa3.64□□□□□ -1.83
LIG3-210ENST00000588109 LINC01549A6NIU2 74 aa3.63□□□□□ -1.83
LIG3-210ENST00000588109 H7C423 109 aa3.63□□□□□ -1.83
LIG3-210ENST00000588109 LEPROTL1O95214 131 aa3.63□□□□□ -1.83
LIG3-210ENST00000588109 FGF6P10767 208 aa3.63□□□□□ -1.83
LIG3-210ENST00000588109 FABP4P15090 132 aa3.63□□□□□ -1.83
LIG3-210ENST00000588109 CASC10Q5T4H9 136 aa3.63□□□□□ -1.83
LIG3-210ENST00000588109 Q6ZN92 141 aa3.63□□□□□ -1.83
LIG3-210ENST00000588109 WFDC10BQ8IUB3 73 aa3.63□□□□□ -1.83
LIG3-210ENST00000588109 OR5A1Q8NGJ0 315 aa3.63□□□□□ -1.83
LIG3-210ENST00000588109 TOMM6Q96B49 74 aa3.63□□□□□ -1.83
LIG3-210ENST00000588109 SPANXA1Q9NS26 97 aa3.63□□□□□ -1.83
LIG3-210ENST00000588109 HSPB8Q9UJY1 196 aa3.63□□□□□ -1.83
LIG3-210ENST00000588109 MRPS16Q9Y3D3 137 aaKnown RBP3.63□□□□□ -1.83
LIG3-210ENST00000588109 CBY1Q9Y3M2 126 aa3.63□□□□□ -1.83
LIG3-210ENST00000588109 DYNC2H1Q8NCM8 4307 aaKnown RBP3.63□□□□□ -1.83
LIG3-210ENST00000588109 DNAH7Q8WXX0 4024 aa3.63□□□□□ -1.83
LIG3-210ENST00000588109 TGP01266 2768 aa3.62□□□□□ -1.83
LIG3-210ENST00000588109 A0A096LNJ9 63 aa3.62□□□□□ -1.83
LIG3-210ENST00000588109 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.62□□□□□ -1.83
LIG3-210ENST00000588109 SIVA1O15304 175 aa3.62□□□□□ -1.83
LIG3-210ENST00000588109 ATP5LO75964 103 aa3.62□□□□□ -1.83
LIG3-210ENST00000588109 IGHV3-30P01768 117 aa3.62□□□□□ -1.83
LIG3-210ENST00000588109 IGHV3-33P01772 117 aa3.62□□□□□ -1.83
LIG3-210ENST00000588109 ANGP03950 147 aaKnown RBP3.62□□□□□ -1.83
LIG3-210ENST00000588109 IGHV3-30-3P0DP02 117 aa3.62□□□□□ -1.83
LIG3-210ENST00000588109 IGHV3-30-5P0DP03 117 aa3.62□□□□□ -1.83
LIG3-210ENST00000588109 ZNF25P17030 456 aaPredicted RBP3.62□□□□□ -1.83
LIG3-210ENST00000588109 RBX1P62877 108 aa3.62□□□□□ -1.83
LIG3-210ENST00000588109 MPV17L2Q567V2 206 aa3.62□□□□□ -1.83
LIG3-210ENST00000588109 PAPPA-AS1Q5QFB9 102 aa3.62□□□□□ -1.83
LIG3-210ENST00000588109 HIST3H2BBQ8N257 126 aa3.62□□□□□ -1.83
LIG3-210ENST00000588109 Q8N976 141 aa3.62□□□□□ -1.83
LIG3-210ENST00000588109 TMEM141Q96I45 108 aa3.62□□□□□ -1.83
LIG3-210ENST00000588109 UPK3BQ9BT76 320 aa3.62□□□□□ -1.83
LIG3-210ENST00000588109 UBE2D4Q9Y2X8 147 aa3.62□□□□□ -1.83
LIG3-210ENST00000588109 TRAV9-2A0A087WT02 112 aa3.61□□□□□ -1.83
LIG3-210ENST00000588109 IGKV3OR2-268A0A0C4DH90 116 aa3.61□□□□□ -1.83
LIG3-210ENST00000588109 IGIPA6NJ69 53 aa3.61□□□□□ -1.83
LIG3-210ENST00000588109 LY6G6CO95867 125 aa3.61□□□□□ -1.83
LIG3-210ENST00000588109 CRPP02741 224 aa3.61□□□□□ -1.83
LIG3-210ENST00000588109 PRSS1P07477 247 aa3.61□□□□□ -1.83
LIG3-210ENST00000588109 RNASE13Q5GAN3 156 aaKnown RBP3.61□□□□□ -1.83
LIG3-210ENST00000588109 CLPSL2Q6UWE3 100 aa3.61□□□□□ -1.83
LIG3-210ENST00000588109 Q6ZUT4 128 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms