RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 DEFB109BQ30KR1 87 aa-0.05□□□□□ -2.42
SMCHD1-209ENST00000583441 Q6JHZ5 121 aa-0.05□□□□□ -2.42
SMCHD1-209ENST00000583441 TP53AIP1Q9HCN2 124 aa-0.05□□□□□ -2.42
SMCHD1-209ENST00000583441 UBR5O95071 2799 aaPredicted RBP-0.06□□□□□ -2.42
SMCHD1-209ENST00000583441 UBE2L5PA0A1B0GUS4 154 aa-0.06□□□□□ -2.42
SMCHD1-209ENST00000583441 HMGN4O00479 90 aa-0.06□□□□□ -2.42
SMCHD1-209ENST00000583441 UBE2L3P68036 154 aaKnown RBP-0.06□□□□□ -2.42
SMCHD1-209ENST00000583441 TSLPQ969D9 159 aa-0.06□□□□□ -2.42
SMCHD1-209ENST00000583441 SHANK2Q9UPX8 1470 aa-0.06□□□□□ -2.42
SMCHD1-209ENST00000583441 LRP6O75581 1613 aa-0.06□□□□□ -2.42
SMCHD1-209ENST00000583441 SPTBN2O15020 2390 aa-0.06□□□□□ -2.42
SMCHD1-209ENST00000583441 ZNF292O60281 2723 aa-0.07□□□□□ -2.42
SMCHD1-209ENST00000583441 PHLPP1O60346 1717 aa-0.07□□□□□ -2.42
SMCHD1-209ENST00000583441 PATJQ8NI35 1801 aa-0.07□□□□□ -2.42
SMCHD1-209ENST00000583441 OOSP1A8MZH6 123 aa-0.07□□□□□ -2.42
SMCHD1-209ENST00000583441 ATP5EP56381 51 aaPredicted RBP-0.07□□□□□ -2.42
SMCHD1-209ENST00000583441 C9orf153Q5TBE3 101 aa-0.07□□□□□ -2.42
SMCHD1-209ENST00000583441 KDM3BQ7LBC6 1761 aa-0.07□□□□□ -2.42
SMCHD1-209ENST00000583441 WNK3Q9BYP7 1800 aa-0.08□□□□□ -2.42
SMCHD1-209ENST00000583441 FAM24AA6NFZ4 105 aa-0.08□□□□□ -2.42
SMCHD1-209ENST00000583441 DLEU1O43261 78 aa-0.08□□□□□ -2.42
SMCHD1-209ENST00000583441 SNAPC5O75971 98 aa-0.08□□□□□ -2.42
SMCHD1-209ENST00000583441 SFT2D2O95562 160 aa-0.08□□□□□ -2.42
SMCHD1-209ENST00000583441 PIGYQ3MUY2 71 aa-0.08□□□□□ -2.42
SMCHD1-209ENST00000583441 UQCR10Q9UDW1 63 aa-0.08□□□□□ -2.42
SMCHD1-209ENST00000583441 IER3IP1Q9Y5U9 82 aa-0.08□□□□□ -2.42
SMCHD1-209ENST00000583441 MYH9P35579 1960 aaKnown RBP-0.08□□□□□ -2.42
SMCHD1-209ENST00000583441 PI4KAP42356 2102 aa-0.08□□□□□ -2.42
SMCHD1-209ENST00000583441 ABCA2Q9BZC7 2435 aa-0.09□□□□□ -2.42
SMCHD1-209ENST00000583441 I3L2K1 104 aa-0.09□□□□□ -2.42
SMCHD1-209ENST00000583441 MGPP08493 103 aa-0.09□□□□□ -2.42
SMCHD1-209ENST00000583441 WHAMMP3Q1A5X7 153 aa-0.09□□□□□ -2.42
SMCHD1-209ENST00000583441 FOCADQ5VW36 1801 aa-0.09□□□□□ -2.42
SMCHD1-209ENST00000583441 TRBV6-1A0A0K0K1D8 114 aa-0.1□□□□□ -2.43
SMCHD1-209ENST00000583441 CHKB-CPT1BH3BT56 60 aa-0.1□□□□□ -2.43
SMCHD1-209ENST00000583441 SPRR1AP35321 89 aa-0.1□□□□□ -2.43
SMCHD1-209ENST00000583441 DPH3P1Q9H4G8 78 aa-0.1□□□□□ -2.43
SMCHD1-209ENST00000583441 FAIMQ9NVQ4 179 aa-0.1□□□□□ -2.43
SMCHD1-209ENST00000583441 LINC00474Q9P2X8 69 aa-0.1□□□□□ -2.43
SMCHD1-209ENST00000583441 CACNA1AO00555 2505 aa-0.1□□□□□ -2.43
SMCHD1-209ENST00000583441 DOCK1Q14185 1865 aa-0.1□□□□□ -2.43
SMCHD1-209ENST00000583441 RIMS1Q86UR5 1692 aaKnown RBP-0.11□□□□□ -2.43
SMCHD1-209ENST00000583441 GNG4P50150 75 aa-0.11□□□□□ -2.43
SMCHD1-209ENST00000583441 NXT2Q9NPJ8 142 aaKnown RBP-0.11□□□□□ -2.43
SMCHD1-209ENST00000583441 MYH8P13535 1937 aa-0.11□□□□□ -2.43
SMCHD1-209ENST00000583441 C10orf71Q711Q0 1435 aa-0.12□□□□□ -2.43
SMCHD1-209ENST00000583441 SMG6Q86US8 1419 aaKnown RBP-0.12□□□□□ -2.43
SMCHD1-209ENST00000583441 A0A1B0GV90 55 aa-0.12□□□□□ -2.43
SMCHD1-209ENST00000583441 CORTO00230 105 aa-0.12□□□□□ -2.43
SMCHD1-209ENST00000583441 TMEM263Q8WUH6 116 aaKnown RBP-0.12□□□□□ -2.43
SMCHD1-209ENST00000583441 FAM167A-AS1Q96KT0 104 aa-0.12□□□□□ -2.43
SMCHD1-209ENST00000583441 CDC42SE2Q9NRR3 84 aa-0.12□□□□□ -2.43
SMCHD1-209ENST00000583441 KIF21AQ7Z4S6 1674 aa-0.12□□□□□ -2.43
SMCHD1-209ENST00000583441 LAMC1P11047 1609 aa-0.13□□□□□ -2.43
SMCHD1-209ENST00000583441 PLXNB2O15031 1838 aa-0.13□□□□□ -2.43
SMCHD1-209ENST00000583441 MYOM2P54296 1465 aa-0.13□□□□□ -2.43
SMCHD1-209ENST00000583441 F6UZH7 168 aa-0.13□□□□□ -2.43
SMCHD1-209ENST00000583441 SVBPQ8N300 66 aa-0.13□□□□□ -2.43
SMCHD1-209ENST00000583441 TMEM203Q969S6 136 aa-0.13□□□□□ -2.43
SMCHD1-209ENST00000583441 FLNCQ14315 2725 aa-0.13□□□□□ -2.43
SMCHD1-209ENST00000583441 DOCK2Q92608 1830 aa-0.13□□□□□ -2.43
SMCHD1-209ENST00000583441 NSD1Q96L73 2696 aaPredicted RBP-0.13□□□□□ -2.43
SMCHD1-209ENST00000583441 WNK2Q9Y3S1 2297 aa-0.13□□□□□ -2.43
SMCHD1-209ENST00000583441 QRICH2Q9H0J4 1663 aa-0.14□□□□□ -2.43
SMCHD1-209ENST00000583441 MYH7P12883 1935 aa-0.14□□□□□ -2.43
SMCHD1-209ENST00000583441 C2CD3Q4AC94 2353 aa-0.14□□□□□ -2.43
SMCHD1-209ENST00000583441 FXYD6-FXYD2A0A087WZ82 144 aa-0.14□□□□□ -2.43
SMCHD1-209ENST00000583441 GNG11P61952 73 aa-0.14□□□□□ -2.43
SMCHD1-209ENST00000583441 PPP3R1P63098 170 aa-0.14□□□□□ -2.43
SMCHD1-209ENST00000583441 RAPGEF6Q8TEU7 1601 aa-0.14□□□□□ -2.43
SMCHD1-209ENST00000583441 AKAP6Q13023 2319 aa-0.14□□□□□ -2.43
SMCHD1-209ENST00000583441 PTPN13Q12923 2485 aa-0.14□□□□□ -2.43
SMCHD1-209ENST00000583441 TENM4Q6N022 2769 aa-0.15□□□□□ -2.43
SMCHD1-209ENST00000583441 IGLC1P0CG04 106 aa-0.15□□□□□ -2.43
SMCHD1-209ENST00000583441 MRPS10P82664 201 aaKnown RBP-0.15□□□□□ -2.43
SMCHD1-209ENST00000583441 SPRR4Q96PI1 79 aa-0.15□□□□□ -2.43
SMCHD1-209ENST00000583441 C2orf88Q9BSF0 95 aa-0.15□□□□□ -2.43
SMCHD1-209ENST00000583441 PPRC1Q5VV67 1664 aaKnown RBP-0.15□□□□□ -2.43
SMCHD1-209ENST00000583441 ZNF236Q9UL36 1845 aa-0.15□□□□□ -2.43
SMCHD1-209ENST00000583441 DSTQ03001 7570 aaKnown RBP-0.15□□□□□ -2.43
SMCHD1-209ENST00000583441 PTPRQQ9UMZ3 2332 aa-0.16□□□□□ -2.43
SMCHD1-209ENST00000583441 MYOM1P52179 1685 aa-0.16□□□□□ -2.44
SMCHD1-209ENST00000583441 H3BQ15 152 aa-0.16□□□□□ -2.44
SMCHD1-209ENST00000583441 ARL2-SNX15V9GYD0 113 aa-0.16□□□□□ -2.44
SMCHD1-209ENST00000583441 NALCNQ8IZF0 1738 aa-0.16□□□□□ -2.44
SMCHD1-209ENST00000583441 CSMD3Q7Z407 3707 aa-0.16□□□□□ -2.44
SMCHD1-209ENST00000583441 SBF2Q86WG5 1849 aa-0.17□□□□□ -2.44
SMCHD1-209ENST00000583441 NAP1L6A6NFF2 107 aa-0.17□□□□□ -2.44
SMCHD1-209ENST00000583441 COX6CP09669 75 aa-0.17□□□□□ -2.44
SMCHD1-209ENST00000583441 COX6B1P14854 86 aa-0.17□□□□□ -2.44
SMCHD1-209ENST00000583441 UBA52P62987 128 aaKnown RBP-0.17□□□□□ -2.44
SMCHD1-209ENST00000583441 DEFB123Q8N688 67 aa-0.17□□□□□ -2.44
SMCHD1-209ENST00000583441 GNG8Q9UK08 70 aa-0.17□□□□□ -2.44
SMCHD1-209ENST00000583441 POLA1P09884 1462 aaPredicted RBP-0.17□□□□□ -2.44
SMCHD1-209ENST00000583441 PKDREJQ9NTG1 2253 aa-0.17□□□□□ -2.44
SMCHD1-209ENST00000583441 SCAPERQ9BY12 1400 aa-0.18□□□□□ -2.44
SMCHD1-209ENST00000583441 MAPKBP1O60336 1514 aa-0.18□□□□□ -2.44
SMCHD1-209ENST00000583441 PKD1L1Q8TDX9 2849 aa-0.19□□□□□ -2.44
SMCHD1-209ENST00000583441 NSD3Q9BZ95 1437 aa-0.19□□□□□ -2.44
SMCHD1-209ENST00000583441 S100A1P23297 94 aa-0.19□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms