RNA–Protein interactions for RNA: ENST00000581631.1

SMCHD1-206, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 729 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-206ENST00000581631 MYH4Q9Y623 1939 aa0.18□□□□□ -2.38
SMCHD1-206ENST00000581631 USF3Q68DE3 2245 aa0.18□□□□□ -2.38
SMCHD1-206ENST00000581631 ROCK2O75116 1388 aaKnown RBP0.18□□□□□ -2.38
SMCHD1-206ENST00000581631 AKAP6Q13023 2319 aa0.18□□□□□ -2.38
SMCHD1-206ENST00000581631 ANKRD17O75179 2603 aaKnown RBP0.17□□□□□ -2.38
SMCHD1-206ENST00000581631 TSC2P49815 1807 aa0.17□□□□□ -2.38
SMCHD1-206ENST00000581631 KIF20BQ96Q89 1820 aa0.17□□□□□ -2.38
SMCHD1-206ENST00000581631 UBR5O95071 2799 aaPredicted RBP0.17□□□□□ -2.38
SMCHD1-206ENST00000581631 PIEZO2Q9H5I5 2752 aa0.17□□□□□ -2.38
SMCHD1-206ENST00000581631 MRC2Q9UBG0 1479 aa0.17□□□□□ -2.38
SMCHD1-206ENST00000581631 NHSL1Q5SYE7 1610 aa0.17□□□□□ -2.38
SMCHD1-206ENST00000581631 ZFHX3Q15911 3703 aa0.17□□□□□ -2.38
SMCHD1-206ENST00000581631 UBE2L5PA0A1B0GUS4 154 aa0.17□□□□□ -2.38
SMCHD1-206ENST00000581631 PPP1R17O96001 155 aa0.17□□□□□ -2.38
SMCHD1-206ENST00000581631 APOC3P02656 99 aa0.17□□□□□ -2.38
SMCHD1-206ENST00000581631 PRH1P02810 166 aa0.17□□□□□ -2.38
SMCHD1-206ENST00000581631 NMBP08949 121 aa0.17□□□□□ -2.38
SMCHD1-206ENST00000581631 UBE2L3P68036 154 aaKnown RBP0.17□□□□□ -2.38
SMCHD1-206ENST00000581631 PTPN13Q12923 2485 aa0.17□□□□□ -2.38
SMCHD1-206ENST00000581631 CATR1Q13166 79 aa0.17□□□□□ -2.38
SMCHD1-206ENST00000581631 S100A7L2Q5SY68 101 aa0.17□□□□□ -2.38
SMCHD1-206ENST00000581631 C10orf128Q5T292 105 aa0.17□□□□□ -2.38
SMCHD1-206ENST00000581631 CFAP126Q5VTH2 177 aa0.17□□□□□ -2.38
SMCHD1-206ENST00000581631 MRPL54Q6P161 138 aaKnown RBP0.17□□□□□ -2.38
SMCHD1-206ENST00000581631 C5orf38Q86SI9 138 aa0.17□□□□□ -2.38
SMCHD1-206ENST00000581631 TTC9CQ8N5M4 171 aa0.17□□□□□ -2.38
SMCHD1-206ENST00000581631 CNFNQ9BYD5 112 aa0.17□□□□□ -2.38
SMCHD1-206ENST00000581631 SPTA1P02549 2419 aa0.17□□□□□ -2.38
SMCHD1-206ENST00000581631 ARHGAP5Q13017 1502 aa0.17□□□□□ -2.38
SMCHD1-206ENST00000581631 COL14A1Q05707 1796 aaKnown RBP0.17□□□□□ -2.38
SMCHD1-206ENST00000581631 TOP2BQ02880 1626 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 CC2D2AQ9P2K1 1620 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 SHANK2Q9UPX8 1470 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 ANK2Q01484 3957 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 ABCA2Q9BZC7 2435 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 A0A0G2JMZ2 1700 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 KIAA1551Q9HCM1 1747 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 ARHGEF5Q12774 1597 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 NSD3Q9BZ95 1437 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 TRBV7-3A0A075B6L6 115 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 FAM24AA6NFZ4 105 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 F6UZH7 168 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 H3BQ15 152 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 M0R135 149 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 CORTO00230 105 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 UQCR11O14957 56 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 DCDP81605 110 aaKnown RBP0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 RBM3P98179 157 aaKnown RBP0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 SPAG11BQ08648 103 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 Q5BKY6 102 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 C9orf153Q5TBE3 101 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 SPAG11AQ6PDA7 123 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 SVBPQ8N300 66 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 FAM213BQ8TBF2 198 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 LSM10Q969L4 123 aaKnown RBP0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 C2orf88Q9BSF0 95 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 DYNLRB1Q9NP97 96 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 UQCR10Q9UDW1 63 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 SPCS1Q9Y6A9 102 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 V9GYH0 126 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 KDM5AP29375 1690 aaKnown RBP0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 SCN7AQ01118 1682 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 SHPRHQ149N8 1683 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 SYNE1Q8NF91 8797 aaKnown RBP0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 PTPRQQ9UMZ3 2332 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 ZMYM4Q5VZL5 1548 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 RGPD2P0DJD1 1756 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 LRP6O75581 1613 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 WNK2Q9Y3S1 2297 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 PZPP20742 1482 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 XRN1Q8IZH2 1706 aaKnown RBP0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 ANKRD26Q9UPS8 1709 aa0.16□□□□□ -2.38
SMCHD1-206ENST00000581631 KIAA1109Q2LD37 5005 aa0.15□□□□□ -2.38
SMCHD1-206ENST00000581631 DNAJC13O75165 2243 aa0.15□□□□□ -2.38
SMCHD1-206ENST00000581631 FAT4Q6V0I7 4981 aa0.15□□□□□ -2.38
SMCHD1-206ENST00000581631 HIVEP3Q5T1R4 2406 aa0.15□□□□□ -2.39
SMCHD1-206ENST00000581631 GVINP1Q7Z2Y8 2422 aa0.15□□□□□ -2.39
SMCHD1-206ENST00000581631 DMBT1Q9UGM3 2413 aaPredicted RBP0.15□□□□□ -2.39
SMCHD1-206ENST00000581631 CLTCQ00610 1675 aaKnown RBP0.15□□□□□ -2.39
SMCHD1-206ENST00000581631 C10orf71Q711Q0 1435 aa0.15□□□□□ -2.39
SMCHD1-206ENST00000581631 RGPD4Q7Z3J3 1758 aa0.15□□□□□ -2.39
SMCHD1-206ENST00000581631 ZFYVE16Q7Z3T8 1539 aa0.15□□□□□ -2.39
SMCHD1-206ENST00000581631 EHBP1L1Q8N3D4 1523 aa0.15□□□□□ -2.39
SMCHD1-206ENST00000581631 CTXND1A0A1B0GTU2 59 aa0.15□□□□□ -2.39
SMCHD1-206ENST00000581631 NAP1L6A6NFF2 107 aa0.15□□□□□ -2.39
SMCHD1-206ENST00000581631 F8VRH5 84 aa0.15□□□□□ -2.39
SMCHD1-206ENST00000581631 G3V318 75 aa0.15□□□□□ -2.39
SMCHD1-206ENST00000581631 SPINK1P00995 79 aa0.15□□□□□ -2.39
SMCHD1-206ENST00000581631 MGPP08493 103 aa0.15□□□□□ -2.39
SMCHD1-206ENST00000581631 COX6CP09669 75 aa0.15□□□□□ -2.39
SMCHD1-206ENST00000581631 KRTAP2-3P0C7H8 128 aa0.15□□□□□ -2.39
SMCHD1-206ENST00000581631 KRTDAPP60985 99 aa0.15□□□□□ -2.39
SMCHD1-206ENST00000581631 PPP3R1P63098 170 aa0.15□□□□□ -2.39
SMCHD1-206ENST00000581631 GTF2H5Q6ZYL4 71 aa0.15□□□□□ -2.39
SMCHD1-206ENST00000581631 BAGE2Q86Y30 109 aa0.15□□□□□ -2.39
SMCHD1-206ENST00000581631 KRTAP2-4Q9BYR9 128 aa0.15□□□□□ -2.39
SMCHD1-206ENST00000581631 KRTAP2-1Q9BYU5 128 aa0.15□□□□□ -2.39
SMCHD1-206ENST00000581631 NDUFA4L2Q9NRX3 87 aa0.15□□□□□ -2.39
SMCHD1-206ENST00000581631 SCN3BQ9NY72 215 aa0.15□□□□□ -2.39
SMCHD1-206ENST00000581631 GNG8Q9UK08 70 aa0.15□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms