RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 ZNF56Q15929 161 aa2.27□□□□□ -2.05
NUP88-208ENST00000574087 MIAQ16674 131 aa2.27□□□□□ -2.05
NUP88-208ENST00000574087 ARL17AQ8IVW1 177 aa2.27□□□□□ -2.05
NUP88-208ENST00000574087 Q8IYB0 196 aa2.27□□□□□ -2.05
NUP88-208ENST00000574087 DYNAPQ8N1N2 210 aa2.27□□□□□ -2.05
NUP88-208ENST00000574087 Q8N814 137 aa2.27□□□□□ -2.05
NUP88-208ENST00000574087 DYNLRB2Q8TF09 96 aa2.27□□□□□ -2.05
NUP88-208ENST00000574087 LINC00467Q9BRT7 94 aa2.27□□□□□ -2.05
NUP88-208ENST00000574087 CYP4F30PQ9H0H9 118 aa2.27□□□□□ -2.05
NUP88-208ENST00000574087 LHFPL6Q9Y693 200 aa2.27□□□□□ -2.05
NUP88-208ENST00000574087 PAPPA2Q9BXP8 1791 aa2.27□□□□□ -2.05
NUP88-208ENST00000574087 PLXNB1O43157 2135 aa2.27□□□□□ -2.05
NUP88-208ENST00000574087 TRBV25-1A0A075B6N4 114 aa2.26□□□□□ -2.05
NUP88-208ENST00000574087 IGHV3-49A0A0A0MS15 119 aa2.26□□□□□ -2.05
NUP88-208ENST00000574087 A8MWP4 228 aa2.26□□□□□ -2.05
NUP88-208ENST00000574087 B4DSR2 109 aa2.26□□□□□ -2.05
NUP88-208ENST00000574087 H3BVH4 76 aa2.26□□□□□ -2.05
NUP88-208ENST00000574087 LECT2O14960 151 aa2.26□□□□□ -2.05
NUP88-208ENST00000574087 SLC25A20O43772 301 aa2.26□□□□□ -2.05
NUP88-208ENST00000574087 IAPPP10997 89 aa2.26□□□□□ -2.05
NUP88-208ENST00000574087 SPINT3P49223 89 aa2.26□□□□□ -2.05
NUP88-208ENST00000574087 ROMO1P60602 79 aa2.26□□□□□ -2.05
NUP88-208ENST00000574087 S100A7L2Q5SY68 101 aa2.26□□□□□ -2.05
NUP88-208ENST00000574087 ZNF826PQ6ZT77 177 aa2.26□□□□□ -2.05
NUP88-208ENST00000574087 FAM223AQ8IWN6 122 aa2.26□□□□□ -2.05
NUP88-208ENST00000574087 IFI27L1Q96BM0 104 aa2.26□□□□□ -2.05
NUP88-208ENST00000574087 DYNLRB1Q9NP97 96 aa2.26□□□□□ -2.05
NUP88-208ENST00000574087 SHANK1Q9Y566 2161 aa2.25□□□□□ -2.05
NUP88-208ENST00000574087 TRBV7-3A0A075B6L6 115 aa2.25□□□□□ -2.05
NUP88-208ENST00000574087 IGKV2D-26A0A0A0MRZ7 120 aa2.25□□□□□ -2.05
NUP88-208ENST00000574087 TRBV7-1A0A0A6YYK4 115 aa2.25□□□□□ -2.05
NUP88-208ENST00000574087 hDV103S1A0JD37 113 aa2.25□□□□□ -2.05
NUP88-208ENST00000574087 H3BMM0 161 aa2.25□□□□□ -2.05
NUP88-208ENST00000574087 K7ERS5 55 aa2.25□□□□□ -2.05
NUP88-208ENST00000574087 MSMBP08118 114 aa2.25□□□□□ -2.05
NUP88-208ENST00000574087 ARL14EPLP0DKL9 152 aa2.25□□□□□ -2.05
NUP88-208ENST00000574087 FCER1GP30273 86 aa2.25□□□□□ -2.05
NUP88-208ENST00000574087 FXYD3Q14802 87 aa2.25□□□□□ -2.05
NUP88-208ENST00000574087 ATXN8Q156A1 80 aa2.25□□□□□ -2.05
NUP88-208ENST00000574087 KIAA2026Q5HYC2 2103 aa2.25□□□□□ -2.05
NUP88-208ENST00000574087 SPINT4Q6UDR6 99 aa2.25□□□□□ -2.05
NUP88-208ENST00000574087 UBE2WQ96B02 151 aa2.25□□□□□ -2.05
NUP88-208ENST00000574087 FAM167A-AS1Q96KT0 104 aa2.25□□□□□ -2.05
NUP88-208ENST00000574087 TIMM21Q9BVV7 248 aa2.25□□□□□ -2.05
NUP88-208ENST00000574087 BPESC1Q9GZL8 116 aa2.25□□□□□ -2.05
NUP88-208ENST00000574087 COL5A1P20908 1838 aaPredicted RBP2.24□□□□□ -2.05
NUP88-208ENST00000574087 IGHV3-15A0A0B4J1V0 119 aa2.24□□□□□ -2.05
NUP88-208ENST00000574087 IGHV1-3A0A0C4DH29 117 aa2.24□□□□□ -2.05
NUP88-208ENST00000574087 TRBV10-2A0A0K0K1G8 114 aa2.24□□□□□ -2.05
NUP88-208ENST00000574087 LINC01549A6NIU2 74 aa2.24□□□□□ -2.05
NUP88-208ENST00000574087 HIGD1CA8MV81 97 aa2.24□□□□□ -2.05
NUP88-208ENST00000574087 SH2D1AO60880 128 aa2.24□□□□□ -2.05
NUP88-208ENST00000574087 LY6HO94772 140 aa2.24□□□□□ -2.05
NUP88-208ENST00000574087 CLPSP04118 112 aa2.24□□□□□ -2.05
NUP88-208ENST00000574087 RPS27P42677 84 aaKnown RBP2.24□□□□□ -2.05
NUP88-208ENST00000574087 EDDM3BP56851 147 aa2.24□□□□□ -2.05
NUP88-208ENST00000574087 FAM229BQ4G0N7 80 aa2.24□□□□□ -2.05
NUP88-208ENST00000574087 C9orf116Q5BN46 136 aaPredicted RBP2.24□□□□□ -2.05
NUP88-208ENST00000574087 GDF5OSQ5U4N7 250 aa2.24□□□□□ -2.05
NUP88-208ENST00000574087 BRD3OSQ6XYD6 125 aa2.24□□□□□ -2.05
NUP88-208ENST00000574087 ZNF818PQ6ZRF7 136 aa2.24□□□□□ -2.05
NUP88-208ENST00000574087 NDUFA11Q86Y39 141 aa2.24□□□□□ -2.05
NUP88-208ENST00000574087 KLF14Q8TD94 323 aaPredicted RBP2.24□□□□□ -2.05
NUP88-208ENST00000574087 CDC42SE1Q9NRR8 79 aa2.24□□□□□ -2.05
NUP88-208ENST00000574087 COL4A1P02462 1669 aa2.24□□□□□ -2.05
NUP88-208ENST00000574087 DOCK11Q5JSL3 2073 aa2.24□□□□□ -2.05
NUP88-208ENST00000574087 SVILO95425 2214 aa2.23□□□□□ -2.05
NUP88-208ENST00000574087 ZNF407Q9C0G0 2248 aa2.23□□□□□ -2.05
NUP88-208ENST00000574087 IGLV3-32A0A0A0MS00 114 aa2.23□□□□□ -2.05
NUP88-208ENST00000574087 A0A0B4J2C4 111 aa2.23□□□□□ -2.05
NUP88-208ENST00000574087 IQCF6A8MYZ5 107 aa2.23□□□□□ -2.05
NUP88-208ENST00000574087 HCG22E2RYF7 251 aa2.23□□□□□ -2.05
NUP88-208ENST00000574087 IGHV1-46P01743 117 aa2.23□□□□□ -2.05
NUP88-208ENST00000574087 CD24P25063 80 aa2.23□□□□□ -2.05
NUP88-208ENST00000574087 PLNP26678 52 aa2.23□□□□□ -2.05
NUP88-208ENST00000574087 RPL28P46779 137 aaKnown RBP2.23□□□□□ -2.05
NUP88-208ENST00000574087 UBE2D1P51668 147 aa2.23□□□□□ -2.05
NUP88-208ENST00000574087 TFF3Q07654 80 aa2.23□□□□□ -2.05
NUP88-208ENST00000574087 C1orf134Q5TEV5 83 aa2.23□□□□□ -2.05
NUP88-208ENST00000574087 PRO1854Q9UHT4 67 aa2.23□□□□□ -2.05
NUP88-208ENST00000574087 TIMM8BQ9Y5J9 83 aaPredicted RBP2.23□□□□□ -2.05
NUP88-208ENST00000574087 IGKV1D-42A0A075B6H8 117 aa2.22□□□□□ -2.05
NUP88-208ENST00000574087 TRAV7A0A075B6U4 112 aa2.22□□□□□ -2.05
NUP88-208ENST00000574087 TMSB15BA0A087X1C1 80 aa2.22□□□□□ -2.05
NUP88-208ENST00000574087 IGHV3-73A0A0B4J1V6 119 aa2.22□□□□□ -2.05
NUP88-208ENST00000574087 TRAV22A0A0B4J277 110 aa2.22□□□□□ -2.05
NUP88-208ENST00000574087 TRBV10-3A0A0K0K1G6 114 aa2.22□□□□□ -2.05
NUP88-208ENST00000574087 A0A1B0GUT8 65 aa2.22□□□□□ -2.05
NUP88-208ENST00000574087 FAM223BA6NKX1 122 aa2.22□□□□□ -2.05
NUP88-208ENST00000574087 C5orf67F2Z3F1 127 aa2.22□□□□□ -2.05
NUP88-208ENST00000574087 LHBP01229 141 aa2.22□□□□□ -2.05
NUP88-208ENST00000574087 IGLV3-1P01715 115 aa2.22□□□□□ -2.05
NUP88-208ENST00000574087 TRGV3P03979 118 aa2.22□□□□□ -2.05
NUP88-208ENST00000574087 COX6CP09669 75 aa2.22□□□□□ -2.05
NUP88-208ENST00000574087 MIFP14174 115 aa2.22□□□□□ -2.05
NUP88-208ENST00000574087 Q5VV11 94 aa2.22□□□□□ -2.05
NUP88-208ENST00000574087 Q6JHZ5 121 aa2.22□□□□□ -2.05
NUP88-208ENST00000574087 MUC7Q8TAX7 377 aa2.22□□□□□ -2.05
NUP88-208ENST00000574087 MUC22E2RYF6 1773 aaPredicted RBP2.22□□□□□ -2.05
NUP88-208ENST00000574087 KIAA1549Q9HCM3 1950 aa2.21□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms