RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 SBSPONQ8IVN8 264 aa1.79□□□□□ -2.12
VPS35-209ENST00000568642 FAM216BQ8N7L0 139 aa1.79□□□□□ -2.12
VPS35-209ENST00000568642 UBALD1Q8TB05 177 aa1.79□□□□□ -2.12
VPS35-209ENST00000568642 LCN9Q8WX39 176 aa1.79□□□□□ -2.12
VPS35-209ENST00000568642 CLEC2BQ92478 149 aa1.79□□□□□ -2.12
VPS35-209ENST00000568642 RETNLBQ9BQ08 111 aa1.79□□□□□ -2.12
VPS35-209ENST00000568642 V9GYS6 101 aa1.79□□□□□ -2.12
VPS35-209ENST00000568642 TANC2Q9HCD6 1990 aa1.78□□□□□ -2.12
VPS35-209ENST00000568642 TRAV7A0A075B6U4 112 aa1.78□□□□□ -2.12
VPS35-209ENST00000568642 OR51F1A6NGY5 319 aa1.78□□□□□ -2.12
VPS35-209ENST00000568642 MCRIP1C9JLW8 97 aa1.78□□□□□ -2.12
VPS35-209ENST00000568642 WISP3O95389 354 aaPredicted RBP1.78□□□□□ -2.12
VPS35-209ENST00000568642 IFITM1P13164 125 aa1.78□□□□□ -2.12
VPS35-209ENST00000568642 ZNF816Q0VGE8 651 aaPredicted RBP1.78□□□□□ -2.12
VPS35-209ENST00000568642 FUT5Q11128 374 aa1.78□□□□□ -2.12
VPS35-209ENST00000568642 NNATQ16517 81 aa1.78□□□□□ -2.12
VPS35-209ENST00000568642 TDRG1Q3Y452 100 aa1.78□□□□□ -2.12
VPS35-209ENST00000568642 Q56UQ5 140 aa1.78□□□□□ -2.12
VPS35-209ENST00000568642 FAM74A1Q5RGS3 127 aa1.78□□□□□ -2.12
VPS35-209ENST00000568642 GTF2H5Q6ZYL4 71 aa1.78□□□□□ -2.12
VPS35-209ENST00000568642 LINC00269Q8N2A0 174 aa1.78□□□□□ -2.12
VPS35-209ENST00000568642 KCNRGQ8N5I3 272 aa1.78□□□□□ -2.12
VPS35-209ENST00000568642 Q8N8P6 123 aa1.78□□□□□ -2.12
VPS35-209ENST00000568642 CYB561D1Q8N8Q1 229 aa1.78□□□□□ -2.12
VPS35-209ENST00000568642 OR5D16Q8NGK9 328 aa1.78□□□□□ -2.12
VPS35-209ENST00000568642 KLF14Q8TD94 323 aaPredicted RBP1.78□□□□□ -2.12
VPS35-209ENST00000568642 C20orf166-AS1Q96NR2 134 aa1.78□□□□□ -2.12
VPS35-209ENST00000568642 SSPOA2VEC9 5147 aa1.78□□□□□ -2.12
VPS35-209ENST00000568642 LRP1Q07954 4544 aaKnown RBP1.77□□□□□ -2.13
VPS35-209ENST00000568642 TRBV6-6A0A0A6YYG2 114 aa1.77□□□□□ -2.13
VPS35-209ENST00000568642 A0A0D9SG52 128 aa1.77□□□□□ -2.13
VPS35-209ENST00000568642 RBAKDNA6NC62 111 aa1.77□□□□□ -2.13
VPS35-209ENST00000568642 COLCA2A8K830 154 aa1.77□□□□□ -2.13
VPS35-209ENST00000568642 TMEM262E9PQX1 116 aa1.77□□□□□ -2.13
VPS35-209ENST00000568642 TIMM17BO60830 172 aa1.77□□□□□ -2.13
VPS35-209ENST00000568642 TCL1BO95988 128 aa1.77□□□□□ -2.13
VPS35-209ENST00000568642 IGLV1-47P01700 117 aa1.77□□□□□ -2.13
VPS35-209ENST00000568642 RBP4P02753 201 aa1.77□□□□□ -2.13
VPS35-209ENST00000568642 MT-ND6P03923 174 aa1.77□□□□□ -2.13
VPS35-209ENST00000568642 FABP4P15090 132 aa1.77□□□□□ -2.13
VPS35-209ENST00000568642 Q0VG73 95 aa1.77□□□□□ -2.13
VPS35-209ENST00000568642 KRTAP25-1Q3LHN0 102 aa1.77□□□□□ -2.13
VPS35-209ENST00000568642 HIGD2BQ4VC39 106 aa1.77□□□□□ -2.13
VPS35-209ENST00000568642 C9orf153Q5TBE3 101 aa1.77□□□□□ -2.13
VPS35-209ENST00000568642 C1orf134Q5TEV5 83 aa1.77□□□□□ -2.13
VPS35-209ENST00000568642 MRPL54Q6P161 138 aaKnown RBP1.77□□□□□ -2.13
VPS35-209ENST00000568642 Q6ZQT7 251 aa1.77□□□□□ -2.13
VPS35-209ENST00000568642 OR5AS1Q8N127 324 aa1.77□□□□□ -2.13
VPS35-209ENST00000568642 BPIFB6Q8NFQ5 453 aa1.77□□□□□ -2.13
VPS35-209ENST00000568642 OR5AK2Q8NH90 309 aa1.77□□□□□ -2.13
VPS35-209ENST00000568642 POP5Q969H6 163 aaKnown RBP1.77□□□□□ -2.13
VPS35-209ENST00000568642 TTTY12Q9BZ98 90 aa1.77□□□□□ -2.13
VPS35-209ENST00000568642 NAA60Q9H7X0 242 aa1.77□□□□□ -2.13
VPS35-209ENST00000568642 NPVFQ9HCQ7 196 aa1.77□□□□□ -2.13
VPS35-209ENST00000568642 FAT3Q8TDW7 4589 aa1.77□□□□□ -2.13
VPS35-209ENST00000568642 LRP1BQ9NZR2 4599 aa1.77□□□□□ -2.13
VPS35-209ENST00000568642 PKHD1L1Q86WI1 4243 aa1.77□□□□□ -2.13
VPS35-209ENST00000568642 GPR98Q8WXG9 6306 aa1.76□□□□□ -2.13
VPS35-209ENST00000568642 DNAH17Q9UFH2 4485 aa1.76□□□□□ -2.13
VPS35-209ENST00000568642 IGKV1D-42A0A075B6H8 117 aa1.76□□□□□ -2.13
VPS35-209ENST00000568642 IGLV2-18A0A075B6J9 118 aa1.76□□□□□ -2.13
VPS35-209ENST00000568642 IGHV3OR16-8A0A075B7F1 116 aa1.76□□□□□ -2.13
VPS35-209ENST00000568642 C3orf85A0A1B0GTC6 90 aa1.76□□□□□ -2.13
VPS35-209ENST00000568642 A0A1W2PRS3 328 aa1.76□□□□□ -2.13
VPS35-209ENST00000568642 GRIFINA4D1Z8 144 aa1.76□□□□□ -2.13
VPS35-209ENST00000568642 MPV17P39210 176 aa1.76□□□□□ -2.13
VPS35-209ENST00000568642 ETV6P41212 452 aa1.76□□□□□ -2.13
VPS35-209ENST00000568642 NDPQ00604 133 aa1.76□□□□□ -2.13
VPS35-209ENST00000568642 ZNF117Q03924 483 aa1.76□□□□□ -2.13
VPS35-209ENST00000568642 AKR1C1Q04828 323 aa1.76□□□□□ -2.13
VPS35-209ENST00000568642 DEFB110Q30KQ9 67 aa1.76□□□□□ -2.13
VPS35-209ENST00000568642 Q5BKY6 102 aa1.76□□□□□ -2.13
VPS35-209ENST00000568642 LINC01545Q5VT33 79 aa1.76□□□□□ -2.13
VPS35-209ENST00000568642 EIF5AL1Q6IS14 154 aaKnown RBP1.76□□□□□ -2.13
VPS35-209ENST00000568642 WFDC9Q8NEX5 89 aa1.76□□□□□ -2.13
VPS35-209ENST00000568642 OR4X2Q8NGF9 303 aa1.76□□□□□ -2.13
VPS35-209ENST00000568642 MCEEQ96PE7 176 aa1.76□□□□□ -2.13
VPS35-209ENST00000568642 CYSTM1Q9H1C7 97 aa1.76□□□□□ -2.13
VPS35-209ENST00000568642 KLK12Q9UKR0 248 aa1.76□□□□□ -2.13
VPS35-209ENST00000568642 KIF25-AS1Q9Y6Z4 181 aa1.76□□□□□ -2.13
VPS35-209ENST00000568642 IGKV1D-17A0A075B6S4 117 aa1.75□□□□□ -2.13
VPS35-209ENST00000568642 IGKV2D-30A0A075B6S6 120 aa1.75□□□□□ -2.13
VPS35-209ENST00000568642 A0A0D9SFI3 127 aa1.75□□□□□ -2.13
VPS35-209ENST00000568642 TRBV10-2A0A0K0K1G8 114 aa1.75□□□□□ -2.13
VPS35-209ENST00000568642 TCRBV3S1A0A5B6 114 aa1.75□□□□□ -2.13
VPS35-209ENST00000568642 C11orf86A6NJI1 115 aa1.75□□□□□ -2.13
VPS35-209ENST00000568642 SDCBPO00560 298 aaPredicted RBP1.75□□□□□ -2.13
VPS35-209ENST00000568642 EDF1O60869 148 aaKnown RBP1.75□□□□□ -2.13
VPS35-209ENST00000568642 IGHV3-53P01767 116 aa1.75□□□□□ -2.13
VPS35-209ENST00000568642 PMP2P02689 132 aa1.75□□□□□ -2.13
VPS35-209ENST00000568642 GYPBP06028 91 aa1.75□□□□□ -2.13
VPS35-209ENST00000568642 SAA1P0DJI8 122 aaPredicted RBP1.75□□□□□ -2.13
VPS35-209ENST00000568642 IL7P13232 177 aa1.75□□□□□ -2.13
VPS35-209ENST00000568642 ASB16-AS1Q495Z4 193 aa1.75□□□□□ -2.13
VPS35-209ENST00000568642 KRTAP26-1Q6PEX3 210 aa1.75□□□□□ -2.13
VPS35-209ENST00000568642 ATP11AUNQ6ZP68 121 aa1.75□□□□□ -2.13
VPS35-209ENST00000568642 C9orf163Q8N9P6 203 aa1.75□□□□□ -2.13
VPS35-209ENST00000568642 CHCHD1Q96BP2 118 aaKnown RBP1.75□□□□□ -2.13
VPS35-209ENST00000568642 ZNF714Q96N38 554 aa1.75□□□□□ -2.13
VPS35-209ENST00000568642 DPH3P1Q9H4G8 78 aa1.75□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms