RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 CACFD1Q9UGQ2 172 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 BLMP54132 1417 aaPredicted RBP0.52□□□□□ -2.33
VPS35-207ENST00000568191 FANCAO15360 1455 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 ERVK-7P63135 1459 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 MLH3Q9UHC1 1453 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 EPRSP07814 1512 aaKnown RBP0.52□□□□□ -2.33
VPS35-207ENST00000568191 CDK13Q14004 1512 aaKnown RBP0.52□□□□□ -2.33
VPS35-207ENST00000568191 UNC13BO14795 1591 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 E9PCH4 1651 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 BTAF1O14981 1849 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 ZNF462Q96JM2 2506 aa0.52□□□□□ -2.33
VPS35-207ENST00000568191 FBN2P35556 2912 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 TRGV2A0A075B6R0 118 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 LOC110117498A0A087WWA1 95 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 TRBV6-7A0A0A0MS04 114 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 IGKV3D-7A0A0C4DH55 119 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 IGKV3OR2-268A0A0C4DH90 116 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 CCDC88BA6NC98 1476 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 SYS1-DBNDD2H3BUS1 97 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 NDUFC1O43677 76 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 MRPS14O60783 128 aaKnown RBP0.51□□□□□ -2.33
VPS35-207ENST00000568191 CYB5AP00167 134 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 NMBP08949 121 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 POLA1P09884 1462 aaPredicted RBP0.51□□□□□ -2.33
VPS35-207ENST00000568191 TRAPPC2P0DI81 140 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 TRAPPC2BP0DI82 140 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 CCL3L1P16619 93 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 FAUP35544 74 aaKnown RBP0.51□□□□□ -2.33
VPS35-207ENST00000568191 EDDM3BP56851 147 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 SPTBN1Q01082 2364 aaKnown RBP0.51□□□□□ -2.33
VPS35-207ENST00000568191 SSBP1Q04837 148 aaKnown RBP0.51□□□□□ -2.33
VPS35-207ENST00000568191 FXYD3Q14802 87 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 PEA15Q15121 130 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 CACNA1EQ15878 2313 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 ZNF56Q15929 161 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 ERICH3Q5RHP9 1530 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 Q5VV11 94 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 PPRC1Q5VV67 1664 aaKnown RBP0.51□□□□□ -2.33
VPS35-207ENST00000568191 C20orf197Q8N268 126 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 EHBP1L1Q8N3D4 1523 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 Q8N6K4 173 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 SERP2Q8N6R1 65 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 C5orf56Q8N8D9 126 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 FAM167A-AS1Q96KT0 104 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 OBSCN-AS1Q96MR7 158 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 TRGV9Q99603 122 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 NLRP1Q9C000 1473 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 CYSTM1Q9H1C7 97 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 MANBALQ9NQG1 85 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 NDUFA4L2Q9NRX3 87 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 MED9Q9NWA0 146 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 PRO1854Q9UHT4 67 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 LENEPQ9Y5L5 61 aa0.51□□□□□ -2.33
VPS35-207ENST00000568191 ZNF236Q9UL36 1845 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 RGPD8O14715 1765 aaPredicted RBP0.5□□□□□ -2.33
VPS35-207ENST00000568191 LTN1O94822 1766 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 KDM3BQ7LBC6 1761 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 RGPD5Q99666 1765 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 NUP188Q5SRE5 1749 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 IFT172Q9UG01 1749 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 ATP10BO94823 1461 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 MRC1P22897 1456 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 NRXN1Q9ULB1 1477 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 EDC4Q6P2E9 1401 aaKnown RBP0.5□□□□□ -2.33
VPS35-207ENST00000568191 PLIN4Q96Q06 1357 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 A0A087WTM6 91 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 IGKV2-40A0A087WW87 121 aaPredicted RBP0.5□□□□□ -2.33
VPS35-207ENST00000568191 UQCRHLA0A096LP55 91 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 TRAV22A0A0B4J277 110 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 A0A0G2JND7 137 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 CHKB-CPT1BH3BT56 60 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 H7BZZ5 65 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 HMGN4O00479 90 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 PPP1R17O96001 155 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 IGKV2D-40P01614 121 aaPredicted RBP0.5□□□□□ -2.33
VPS35-207ENST00000568191 APOC3P02656 99 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 UQCRHP07919 91 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 COX6CP09669 75 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 FXYD4P59646 89 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 ELOF1P60002 83 aaKnown RBP0.5□□□□□ -2.33
VPS35-207ENST00000568191 TDRG1Q3Y452 100 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 C6orf52Q5T4I8 152 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 GDF5OSQ5U4N7 250 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 XAF1Q6GPH4 301 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 UNQ6190/PRO20217Q6UXQ8 127 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 VMO1Q7Z5L0 202 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 COX7B2Q8TF08 81 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 S100A16Q96FQ6 103 aaKnown RBP0.5□□□□□ -2.33
VPS35-207ENST00000568191 S100A13Q99584 98 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 BPESC1Q9GZL8 116 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 DYNLRB1Q9NP97 96 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 NXT2Q9NPJ8 142 aaKnown RBP0.5□□□□□ -2.33
VPS35-207ENST00000568191 CDC42SE2Q9NRR3 84 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 UQCR10Q9UDW1 63 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 SNURFQ9Y675 71 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.5□□□□□ -2.33
VPS35-207ENST00000568191 TNCP24821 2201 aa0.5□□□□□ -2.33
VPS35-207ENST00000568191 PIEZO1Q92508 2521 aa0.49□□□□□ -2.33
VPS35-207ENST00000568191 ZC3H13Q5T200 1668 aaKnown RBP0.49□□□□□ -2.33
VPS35-207ENST00000568191 KIF21AQ7Z4S6 1674 aa0.49□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms