RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 C16orf90A8MZG2 172 aa6.49□□□□□ -1.37
CLK3-220ENST00000567992 I3L3M4 83 aa6.49□□□□□ -1.37
CLK3-220ENST00000567992 PSCAO43653 123 aa6.49□□□□□ -1.37
CLK3-220ENST00000567992 PDZD11Q5EBL8 140 aa6.49□□□□□ -1.37
CLK3-220ENST00000567992 TMEM18Q96B42 140 aa6.49□□□□□ -1.37
CLK3-220ENST00000567992 TM2D2Q9BX73 214 aa6.49□□□□□ -1.37
CLK3-220ENST00000567992 GNB1LQ9BYB4 327 aa6.49□□□□□ -1.37
CLK3-220ENST00000567992 ST20Q9HBF5 79 aa6.49□□□□□ -1.37
CLK3-220ENST00000567992 IGKV2D-24A0A075B6R9 120 aa6.48□□□□□ -1.37
CLK3-220ENST00000567992 APCSP02743 223 aa6.48□□□□□ -1.37
CLK3-220ENST00000567992 MT-ND6P03923 174 aa6.48□□□□□ -1.37
CLK3-220ENST00000567992 ANGP03950 147 aaKnown RBP6.48□□□□□ -1.37
CLK3-220ENST00000567992 ESDP10768 282 aa6.48□□□□□ -1.37
CLK3-220ENST00000567992 KRTAP26-1Q6PEX3 210 aa6.48□□□□□ -1.37
CLK3-220ENST00000567992 LINC00269Q8N2A0 174 aa6.48□□□□□ -1.37
CLK3-220ENST00000567992 ABCA13Q86UQ4 5058 aa6.47□□□□□ -1.37
CLK3-220ENST00000567992 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.47□□□□□ -1.37
CLK3-220ENST00000567992 IGKV2-29A2NJV5 120 aaPredicted RBP6.47□□□□□ -1.37
CLK3-220ENST00000567992 D6R8Y8 96 aa6.47□□□□□ -1.37
CLK3-220ENST00000567992 EREGO14944 169 aa6.47□□□□□ -1.37
CLK3-220ENST00000567992 CRPP02741 224 aa6.47□□□□□ -1.37
CLK3-220ENST00000567992 SUMO2P61956 95 aaKnown RBP6.47□□□□□ -1.37
CLK3-220ENST00000567992 Q0VG73 95 aa6.47□□□□□ -1.37
CLK3-220ENST00000567992 MIAQ16674 131 aa6.47□□□□□ -1.37
CLK3-220ENST00000567992 CLPSL2Q6UWE3 100 aa6.47□□□□□ -1.37
CLK3-220ENST00000567992 Q8N814 137 aa6.47□□□□□ -1.37
CLK3-220ENST00000567992 RMI2Q96E14 147 aa6.47□□□□□ -1.37
CLK3-220ENST00000567992 MRPL18Q9H0U6 180 aaKnown RBP6.47□□□□□ -1.37
CLK3-220ENST00000567992 UBE2L6O14933 153 aa6.46□□□□□ -1.38
CLK3-220ENST00000567992 LECT2O14960 151 aa6.46□□□□□ -1.38
CLK3-220ENST00000567992 PPP1R17O96001 155 aa6.46□□□□□ -1.38
CLK3-220ENST00000567992 NPYP01303 97 aa6.46□□□□□ -1.38
CLK3-220ENST00000567992 PMCHP20382 165 aa6.46□□□□□ -1.38
CLK3-220ENST00000567992 CKS2P33552 79 aa6.46□□□□□ -1.38
CLK3-220ENST00000567992 RPL32P62910 135 aaKnown RBP6.46□□□□□ -1.38
CLK3-220ENST00000567992 REG3AQ06141 175 aa6.46□□□□□ -1.38
CLK3-220ENST00000567992 LCE2AQ5TA79 106 aaPredicted RBP6.46□□□□□ -1.38
CLK3-220ENST00000567992 CDPF1Q6NVV7 123 aa6.46□□□□□ -1.38
CLK3-220ENST00000567992 BAALCQ8WXS3 180 aa6.46□□□□□ -1.38
CLK3-220ENST00000567992 COX11Q9Y6N1 276 aa6.46□□□□□ -1.38
CLK3-220ENST00000567992 H7C423 109 aa6.45□□□□□ -1.38
CLK3-220ENST00000567992 VCYO14598 125 aa6.45□□□□□ -1.38
CLK3-220ENST00000567992 TNFRSF6BO95407 300 aa6.45□□□□□ -1.38
CLK3-220ENST00000567992 HLA-DQA1P01909 254 aa6.45□□□□□ -1.38
CLK3-220ENST00000567992 FGF6P10767 208 aa6.45□□□□□ -1.38
CLK3-220ENST00000567992 TMEM136Q6ZRR5 245 aa6.45□□□□□ -1.38
CLK3-220ENST00000567992 C20orf78Q9BR46 151 aa6.45□□□□□ -1.38
CLK3-220ENST00000567992 C1orf43Q9BWL3 253 aa6.45□□□□□ -1.38
CLK3-220ENST00000567992 PGPEP1Q9NXJ5 209 aa6.45□□□□□ -1.38
CLK3-220ENST00000567992 FAT1Q14517 4588 aa6.45□□□□□ -1.38
CLK3-220ENST00000567992 TSTD3H0UI37 97 aa6.44□□□□□ -1.38
CLK3-220ENST00000567992 PPBPP02775 128 aa6.44□□□□□ -1.38
CLK3-220ENST00000567992 KRTAP10-1P60331 282 aa6.44□□□□□ -1.38
CLK3-220ENST00000567992 NTN5Q8WTR8 489 aaPredicted RBP6.44□□□□□ -1.38
CLK3-220ENST00000567992 SMIM2Q9BVW6 85 aa6.44□□□□□ -1.38
CLK3-220ENST00000567992 KRTAP17-1Q9BYP8 105 aa6.44□□□□□ -1.38
CLK3-220ENST00000567992 PCLOQ9Y6V0 5065 aa6.43□□□□□ -1.38
CLK3-220ENST00000567992 IGLV10-54A0A075B6I4 117 aa6.43□□□□□ -1.38
CLK3-220ENST00000567992 CDK2AP2O75956 126 aa6.43□□□□□ -1.38
CLK3-220ENST00000567992 ZNF25P17030 456 aaPredicted RBP6.43□□□□□ -1.38
CLK3-220ENST00000567992 MRPL52Q86TS9 123 aaKnown RBP6.43□□□□□ -1.38
CLK3-220ENST00000567992 ORMDL3Q8N138 153 aa6.43□□□□□ -1.38
CLK3-220ENST00000567992 VPS13BQ7Z7G8 4022 aa6.43□□□□□ -1.38
CLK3-220ENST00000567992 IGLV5-52A0A0A0MRZ9 124 aa6.42□□□□□ -1.38
CLK3-220ENST00000567992 TRAV8-4A0A0B4J246 113 aa6.42□□□□□ -1.38
CLK3-220ENST00000567992 NUPR1O60356 82 aa6.42□□□□□ -1.38
CLK3-220ENST00000567992 LINC00310P59036 64 aa6.42□□□□□ -1.38
CLK3-220ENST00000567992 AMMECR1LQ6DCA0 310 aa6.42□□□□□ -1.38
CLK3-220ENST00000567992 RNASEKQ6P5S7 137 aaKnown RBP6.42□□□□□ -1.38
CLK3-220ENST00000567992 PRELID3AQ96N28 172 aa6.42□□□□□ -1.38
CLK3-220ENST00000567992 KIR2DL4Q99706 377 aa6.42□□□□□ -1.38
CLK3-220ENST00000567992 PRSS47A8MTI9 375 aa6.41□□□□□ -1.38
CLK3-220ENST00000567992 USP17L23D6RBM5 183 aa6.41□□□□□ -1.38
CLK3-220ENST00000567992 SERF1AO75920 110 aa6.41□□□□□ -1.38
CLK3-220ENST00000567992 DDTP30046 118 aa6.41□□□□□ -1.38
CLK3-220ENST00000567992 FCER1GP30273 86 aa6.41□□□□□ -1.38
CLK3-220ENST00000567992 BAGE3Q86Y29 109 aa6.41□□□□□ -1.38
CLK3-220ENST00000567992 LAMTOR2Q9Y2Q5 125 aa6.41□□□□□ -1.38
CLK3-220ENST00000567992 UBE2D4Q9Y2X8 147 aa6.41□□□□□ -1.38
CLK3-220ENST00000567992 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.4□□□□□ -1.38
CLK3-220ENST00000567992 TCAPO15273 167 aa6.4□□□□□ -1.38
CLK3-220ENST00000567992 GCSHP23434 173 aa6.4□□□□□ -1.38
CLK3-220ENST00000567992 ZNF664Q8N3J9 261 aa6.4□□□□□ -1.38
CLK3-220ENST00000567992 OR5A1Q8NGJ0 315 aa6.4□□□□□ -1.38
CLK3-220ENST00000567992 FAM104AQ969W3 186 aa6.4□□□□□ -1.38
CLK3-220ENST00000567992 CDC42SE2Q9NRR3 84 aa6.4□□□□□ -1.38
CLK3-220ENST00000567992 IGKV3OR2-268A0A0C4DH90 116 aa6.39□□□□□ -1.39
CLK3-220ENST00000567992 PRSS1P07477 247 aa6.39□□□□□ -1.39
CLK3-220ENST00000567992 RPL39P62891 51 aaKnown RBP6.39□□□□□ -1.39
CLK3-220ENST00000567992 C14orf144Q96I85 54 aa6.39□□□□□ -1.39
CLK3-220ENST00000567992 TMEM101Q96IK0 257 aa6.39□□□□□ -1.39
CLK3-220ENST00000567992 CSDC2Q9Y534 153 aaKnown RBP6.39□□□□□ -1.39
CLK3-220ENST00000567992 LINC00959A0A1B0GUT2 108 aa6.38□□□□□ -1.39
CLK3-220ENST00000567992 GAGE12HA6NDE8 117 aa6.38□□□□□ -1.39
CLK3-220ENST00000567992 SCGB1D1O95968 90 aa6.38□□□□□ -1.39
CLK3-220ENST00000567992 XGP55808 180 aa6.38□□□□□ -1.39
CLK3-220ENST00000567992 FOXI1Q12951 378 aa6.38□□□□□ -1.39
CLK3-220ENST00000567992 LBHQ53QV2 105 aaPredicted RBP6.38□□□□□ -1.39
CLK3-220ENST00000567992 Q6ZUT4 128 aa6.38□□□□□ -1.39
CLK3-220ENST00000567992 C15orf56Q8N910 161 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms