RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 TIMM17AQ99595 171 aa9.16□□□□□ -0.94
CLK3-218ENST00000566926 Q9UF83 564 aa9.16□□□□□ -0.94
CLK3-218ENST00000566926 BIRC6Q9NR09 4857 aa9.16□□□□□ -0.94
CLK3-218ENST00000566926 DNAH17Q9UFH2 4485 aa9.15□□□□□ -0.94
CLK3-218ENST00000566926 TRBV25-1A0A075B6N4 114 aa9.15□□□□□ -0.94
CLK3-218ENST00000566926 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.15□□□□□ -0.94
CLK3-218ENST00000566926 IFI27L1Q96BM0 104 aa9.15□□□□□ -0.94
CLK3-218ENST00000566926 SCGB3A1Q96QR1 104 aa9.15□□□□□ -0.94
CLK3-218ENST00000566926 KRTAP1-5Q9BYS1 174 aa9.15□□□□□ -0.94
CLK3-218ENST00000566926 PYGO1Q9Y3Y4 419 aa9.15□□□□□ -0.94
CLK3-218ENST00000566926 SYS1-DBNDD2H3BUS1 97 aa9.14□□□□□ -0.95
CLK3-218ENST00000566926 DNAH10OSP0CZ25 163 aa9.14□□□□□ -0.95
CLK3-218ENST00000566926 KRTDAPP60985 99 aa9.14□□□□□ -0.95
CLK3-218ENST00000566926 JOSD1Q15040 202 aaPredicted RBP9.14□□□□□ -0.95
CLK3-218ENST00000566926 LELP1Q5T871 98 aa9.14□□□□□ -0.95
CLK3-218ENST00000566926 PET117Q6UWS5 81 aa9.14□□□□□ -0.95
CLK3-218ENST00000566926 NFE4Q86UQ8 179 aa9.14□□□□□ -0.95
CLK3-218ENST00000566926 C10orf126Q8N4M7 172 aa9.14□□□□□ -0.95
CLK3-218ENST00000566926 SPANXA1Q9NS26 97 aa9.14□□□□□ -0.95
CLK3-218ENST00000566926 DNAH2Q9P225 4427 aa9.14□□□□□ -0.95
CLK3-218ENST00000566926 TRBV6-8A0A0A6YYG3 113 aa9.13□□□□□ -0.95
CLK3-218ENST00000566926 IGHV3-38A0A0C4DH36 116 aa9.13□□□□□ -0.95
CLK3-218ENST00000566926 C3orf79P0CE67 100 aa9.13□□□□□ -0.95
CLK3-218ENST00000566926 PKIAP61925 76 aa9.13□□□□□ -0.95
CLK3-218ENST00000566926 TNP2Q05952 138 aa9.13□□□□□ -0.95
CLK3-218ENST00000566926 WFDC10BQ8IUB3 73 aa9.13□□□□□ -0.95
CLK3-218ENST00000566926 TMEM243Q9BU79 118 aa9.13□□□□□ -0.95
CLK3-218ENST00000566926 TIMM21Q9BVV7 248 aa9.13□□□□□ -0.95
CLK3-218ENST00000566926 HECTD4Q9Y4D8 3996 aa9.12□□□□□ -0.95
CLK3-218ENST00000566926 IGIPA6NJ69 53 aa9.12□□□□□ -0.95
CLK3-218ENST00000566926 UBE2L6O14933 153 aa9.12□□□□□ -0.95
CLK3-218ENST00000566926 Q6ZN92 141 aa9.12□□□□□ -0.95
CLK3-218ENST00000566926 CHCHD7Q9BUK0 85 aa9.12□□□□□ -0.95
CLK3-218ENST00000566926 CSDC2Q9Y534 153 aaKnown RBP9.12□□□□□ -0.95
CLK3-218ENST00000566926 TRAV12-1A0A0B4J245 112 aa9.11□□□□□ -0.95
CLK3-218ENST00000566926 ZNF25P17030 456 aaPredicted RBP9.11□□□□□ -0.95
CLK3-218ENST00000566926 LINC01556Q5JQF7 62 aa9.11□□□□□ -0.95
CLK3-218ENST00000566926 MRPL52Q86TS9 123 aaKnown RBP9.11□□□□□ -0.95
CLK3-218ENST00000566926 FAT2Q9NYQ8 4349 aa9.11□□□□□ -0.95
CLK3-218ENST00000566926 SCGB1D1O95968 90 aa9.1□□□□□ -0.95
CLK3-218ENST00000566926 PRSS1P07477 247 aa9.1□□□□□ -0.95
CLK3-218ENST00000566926 EREGO14944 169 aa9.09□□□□□ -0.95
CLK3-218ENST00000566926 RPL39P62891 51 aaKnown RBP9.09□□□□□ -0.95
CLK3-218ENST00000566926 MRPS36P82909 103 aaKnown RBP9.09□□□□□ -0.95
CLK3-218ENST00000566926 PYY3Q5JQD4 70 aa9.09□□□□□ -0.95
CLK3-218ENST00000566926 LINC01545Q5VT33 79 aa9.09□□□□□ -0.95
CLK3-218ENST00000566926 NTM-AS1Q6ZSK4 140 aa9.09□□□□□ -0.95
CLK3-218ENST00000566926 LINC00173Q6ZV60 143 aa9.09□□□□□ -0.95
CLK3-218ENST00000566926 UBE2D4Q9Y2X8 147 aa9.09□□□□□ -0.95
CLK3-218ENST00000566926 PMVKQ15126 192 aa9.08□□□□□ -0.96
CLK3-218ENST00000566926 DGAT2L7PQ6IED9 249 aa9.08□□□□□ -0.96
CLK3-218ENST00000566926 TMEM101Q96IK0 257 aa9.08□□□□□ -0.96
CLK3-218ENST00000566926 AMMECR1LQ6DCA0 310 aa9.07□□□□□ -0.96
CLK3-218ENST00000566926 Q6ZRN7 208 aaPredicted RBP9.07□□□□□ -0.96
CLK3-218ENST00000566926 BAALCQ8WXS3 180 aa9.07□□□□□ -0.96
CLK3-218ENST00000566926 CHCHD5Q9BSY4 110 aa9.07□□□□□ -0.96
CLK3-218ENST00000566926 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.06□□□□□ -0.96
CLK3-218ENST00000566926 A0A087WX48 190 aa9.06□□□□□ -0.96
CLK3-218ENST00000566926 IGKV2-29A2NJV5 120 aaPredicted RBP9.06□□□□□ -0.96
CLK3-218ENST00000566926 IBA57-AS1B1ANH7 110 aa9.06□□□□□ -0.96
CLK3-218ENST00000566926 FGF6P10767 208 aa9.06□□□□□ -0.96
CLK3-218ENST00000566926 PLNP26678 52 aa9.06□□□□□ -0.96
CLK3-218ENST00000566926 S100A12P80511 92 aa9.06□□□□□ -0.96
CLK3-218ENST00000566926 OR5A1Q8NGJ0 315 aa9.06□□□□□ -0.96
CLK3-218ENST00000566926 DEFB104AQ8WTQ1 72 aa9.06□□□□□ -0.96
CLK3-218ENST00000566926 C2orf88Q9BSF0 95 aa9.06□□□□□ -0.96
CLK3-218ENST00000566926 VCX2Q9H322 139 aa9.06□□□□□ -0.96
CLK3-218ENST00000566926 PKD1P98161 4303 aa9.05□□□□□ -0.96
CLK3-218ENST00000566926 IGLV4-3A0A075B6K6 122 aa9.05□□□□□ -0.96
CLK3-218ENST00000566926 A0A1B0GUV1 79 aa9.05□□□□□ -0.96
CLK3-218ENST00000566926 F8VRH5 84 aa9.05□□□□□ -0.96
CLK3-218ENST00000566926 H0Y8G0 127 aa9.05□□□□□ -0.96
CLK3-218ENST00000566926 IGHV3-30P01768 117 aa9.05□□□□□ -0.96
CLK3-218ENST00000566926 IGHV3-33P01772 117 aa9.05□□□□□ -0.96
CLK3-218ENST00000566926 IGHV3-30-3P0DP02 117 aa9.05□□□□□ -0.96
CLK3-218ENST00000566926 IGHV3-30-5P0DP03 117 aa9.05□□□□□ -0.96
CLK3-218ENST00000566926 TEX43Q6ZNM6 134 aa9.05□□□□□ -0.96
CLK3-218ENST00000566926 CST9LQ9H4G1 147 aa9.05□□□□□ -0.96
CLK3-218ENST00000566926 C16orf90A8MZG2 172 aa9.04□□□□□ -0.96
CLK3-218ENST00000566926 ODF1Q14990 250 aa9.04□□□□□ -0.96
CLK3-218ENST00000566926 LINC00518Q8N0U6 118 aa9.04□□□□□ -0.96
CLK3-218ENST00000566926 Q8N976 141 aa9.04□□□□□ -0.96
CLK3-218ENST00000566926 AMELXQ99217 191 aa9.04□□□□□ -0.96
CLK3-218ENST00000566926 C12orf57Q99622 126 aa9.04□□□□□ -0.96
CLK3-218ENST00000566926 PKHD1P08F94 4074 aa9.03□□□□□ -0.96
CLK3-218ENST00000566926 HSBP1L1C9JCN9 74 aa9.03□□□□□ -0.96
CLK3-218ENST00000566926 PSCAO43653 123 aa9.03□□□□□ -0.96
CLK3-218ENST00000566926 DPM2O94777 84 aa9.03□□□□□ -0.96
CLK3-218ENST00000566926 CHTOPQ9Y3Y2 248 aaKnown RBP9.03□□□□□ -0.96
CLK3-218ENST00000566926 TRAV8-3A0A0A6YYJ7 113 aa9.02□□□□□ -0.97
CLK3-218ENST00000566926 SEC11AP67812 179 aa9.02□□□□□ -0.97
CLK3-218ENST00000566926 GAGE6Q13070 117 aa9.02□□□□□ -0.97
CLK3-218ENST00000566926 ZNF664Q8N3J9 261 aa9.02□□□□□ -0.97
CLK3-218ENST00000566926 TM2D2Q9BX73 214 aa9.02□□□□□ -0.97
CLK3-218ENST00000566926 CDC42SE2Q9NRR3 84 aa9.02□□□□□ -0.97
CLK3-218ENST00000566926 TMEM262E9PQX1 116 aa9.01□□□□□ -0.97
CLK3-218ENST00000566926 IGKCP01834 107 aa9.01□□□□□ -0.97
CLK3-218ENST00000566926 VAMP8Q9BV40 100 aa9.01□□□□□ -0.97
CLK3-218ENST00000566926 Q9HAA7 133 aa9.01□□□□□ -0.97
CLK3-218ENST00000566926 PGPEP1Q9NXJ5 209 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms