RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 TRAV10A0A0B4J240 114 aa3.89□□□□□ -1.79
VPS13C-209ENST00000560637 TRBV6-1A0A0K0K1D8 114 aa3.89□□□□□ -1.79
VPS13C-209ENST00000560637 A0A1B0GXF2 115 aa3.89□□□□□ -1.79
VPS13C-209ENST00000560637 SLC25A34Q6PIV7 304 aa3.89□□□□□ -1.79
VPS13C-209ENST00000560637 RNF185Q96GF1 192 aa3.89□□□□□ -1.79
VPS13C-209ENST00000560637 NAA38Q9BRA0 125 aaKnown RBP3.89□□□□□ -1.79
VPS13C-209ENST00000560637 LCE2DQ5TA82 110 aaPredicted RBP3.89□□□□□ -1.79
VPS13C-209ENST00000560637 CDPF1Q6NVV7 123 aa3.89□□□□□ -1.79
VPS13C-209ENST00000560637 TMEM141Q96I45 108 aa3.89□□□□□ -1.79
VPS13C-209ENST00000560637 C20orf78Q9BR46 151 aa3.89□□□□□ -1.79
VPS13C-209ENST00000560637 X6R8D5 127 aa3.89□□□□□ -1.79
VPS13C-209ENST00000560637 CCL25O15444 150 aa3.89□□□□□ -1.79
VPS13C-209ENST00000560637 TDRG1Q3Y452 100 aa3.89□□□□□ -1.79
VPS13C-209ENST00000560637 C9orf85Q96MD7 179 aa3.89□□□□□ -1.79
VPS13C-209ENST00000560637 CTAG1AP78358 180 aa3.88□□□□□ -1.79
VPS13C-209ENST00000560637 Q0VG73 95 aa3.88□□□□□ -1.79
VPS13C-209ENST00000560637 PMVKQ15126 192 aa3.88□□□□□ -1.79
VPS13C-209ENST00000560637 LGALS9BQ3B8N2 356 aa3.88□□□□□ -1.79
VPS13C-209ENST00000560637 TIMM21Q9BVV7 248 aa3.88□□□□□ -1.79
VPS13C-209ENST00000560637 LAMTOR2Q9Y2Q5 125 aa3.88□□□□□ -1.79
VPS13C-209ENST00000560637 TRAV8-3A0A0A6YYJ7 113 aa3.88□□□□□ -1.79
VPS13C-209ENST00000560637 LOC107984156A0A0G2JMH3 177 aa3.88□□□□□ -1.79
VPS13C-209ENST00000560637 TEX48A0A1B0GUV7 120 aa3.88□□□□□ -1.79
VPS13C-209ENST00000560637 A0A1B0GV72 72 aa3.88□□□□□ -1.79
VPS13C-209ENST00000560637 CIRBPQ14011 172 aaKnown RBP3.88□□□□□ -1.79
VPS13C-209ENST00000560637 ARL17AQ8IVW1 177 aa3.88□□□□□ -1.79
VPS13C-209ENST00000560637 TRAV9-2A0A087WT02 112 aa3.88□□□□□ -1.79
VPS13C-209ENST00000560637 A6NDN8 102 aa3.88□□□□□ -1.79
VPS13C-209ENST00000560637 K7EMI3 77 aa3.88□□□□□ -1.79
VPS13C-209ENST00000560637 VAMP3Q15836 100 aa3.88□□□□□ -1.79
VPS13C-209ENST00000560637 C12orf74Q32Q52 190 aa3.88□□□□□ -1.79
VPS13C-209ENST00000560637 GAGE2EQ4V326 116 aa3.88□□□□□ -1.79
VPS13C-209ENST00000560637 DAND5Q8N907 189 aa3.88□□□□□ -1.79
VPS13C-209ENST00000560637 GTSF1LQ9H1H1 148 aa3.88□□□□□ -1.79
VPS13C-209ENST00000560637 GAGE2DQ9UEU5 116 aa3.88□□□□□ -1.79
VPS13C-209ENST00000560637 IGKV2-24A0A0C4DH68 120 aa3.87□□□□□ -1.79
VPS13C-209ENST00000560637 A8MZ25 164 aa3.87□□□□□ -1.79
VPS13C-209ENST00000560637 RS1O15537 224 aa3.87□□□□□ -1.79
VPS13C-209ENST00000560637 MPV17L2Q567V2 206 aa3.87□□□□□ -1.79
VPS13C-209ENST00000560637 Q8N3U1 123 aa3.87□□□□□ -1.79
VPS13C-209ENST00000560637 C19orf73Q9NVV2 129 aa3.87□□□□□ -1.79
VPS13C-209ENST00000560637 TP73-AS1Q9UF72 201 aa3.87□□□□□ -1.79
VPS13C-209ENST00000560637 SMIM6P0DI80 62 aa3.87□□□□□ -1.79
VPS13C-209ENST00000560637 TIRAPP58753 221 aa3.87□□□□□ -1.79
VPS13C-209ENST00000560637 POM121L12Q8N7R1 296 aa3.87□□□□□ -1.79
VPS13C-209ENST00000560637 C20orf203Q8NBC4 194 aa3.87□□□□□ -1.79
VPS13C-209ENST00000560637 TRBV6-8A0A0A6YYG3 113 aa3.86□□□□□ -1.79
VPS13C-209ENST00000560637 MED14OSP0DP75 135 aa3.86□□□□□ -1.79
VPS13C-209ENST00000560637 RBX1P62877 108 aa3.86□□□□□ -1.79
VPS13C-209ENST00000560637 FHL2Q14192 279 aa3.86□□□□□ -1.79
VPS13C-209ENST00000560637 EDA2RQ9HAV5 297 aa3.86□□□□□ -1.79
VPS13C-209ENST00000560637 LINC00694P0DN24 101 aa3.86□□□□□ -1.79
VPS13C-209ENST00000560637 CRYBA4P53673 196 aa3.86□□□□□ -1.79
VPS13C-209ENST00000560637 WFDC10BQ8IUB3 73 aa3.86□□□□□ -1.79
VPS13C-209ENST00000560637 C11orf72Q8NBR9 251 aa3.86□□□□□ -1.79
VPS13C-209ENST00000560637 ORAOV1Q8WV07 137 aa3.86□□□□□ -1.79
VPS13C-209ENST00000560637 KRTAP3-3Q9BYR6 98 aa3.86□□□□□ -1.79
VPS13C-209ENST00000560637 KRTAP3-2Q9BYR7 98 aa3.86□□□□□ -1.79
VPS13C-209ENST00000560637 IGHV4-4A0A075B6R2 117 aa3.86□□□□□ -1.79
VPS13C-209ENST00000560637 TRBV10-1A0A0K0K1A3 114 aa3.86□□□□□ -1.79
VPS13C-209ENST00000560637 TRBV6-4A0A1B0GX49 114 aa3.86□□□□□ -1.79
VPS13C-209ENST00000560637 GAGE12HA6NDE8 117 aa3.86□□□□□ -1.79
VPS13C-209ENST00000560637 GIG44P09565 113 aaPredicted RBP3.86□□□□□ -1.79
VPS13C-209ENST00000560637 REG3AQ06141 175 aa3.86□□□□□ -1.79
VPS13C-209ENST00000560637 F8VRH5 84 aa3.85□□□□□ -1.79
VPS13C-209ENST00000560637 SIVA1O15304 175 aa3.85□□□□□ -1.79
VPS13C-209ENST00000560637 JOSD1Q15040 202 aaPredicted RBP3.85□□□□□ -1.79
VPS13C-209ENST00000560637 NHP2Q9NX24 153 aaKnown RBP3.85□□□□□ -1.79
VPS13C-209ENST00000560637 GAGE10A6NGK3 116 aa3.85□□□□□ -1.79
VPS13C-209ENST00000560637 RPL18AQ02543 176 aaKnown RBP3.85□□□□□ -1.79
VPS13C-209ENST00000560637 PCP2Q8IVA1 136 aa3.85□□□□□ -1.79
VPS13C-209ENST00000560637 NRACQ8N912 160 aa3.85□□□□□ -1.79
VPS13C-209ENST00000560637 DNAJC30Q96LL9 226 aa3.85□□□□□ -1.79
VPS13C-209ENST00000560637 CAMK2N2Q96S95 79 aa3.85□□□□□ -1.79
VPS13C-209ENST00000560637 UQCR10Q9UDW1 63 aa3.85□□□□□ -1.79
VPS13C-209ENST00000560637 NDUFA12Q9UI09 145 aa3.85□□□□□ -1.79
VPS13C-209ENST00000560637 IGLV4-60A0A075B6I1 120 aa3.85□□□□□ -1.79
VPS13C-209ENST00000560637 LOC105371267A0A1B0GV96 52 aa3.85□□□□□ -1.79
VPS13C-209ENST00000560637 C11orf86A6NJI1 115 aa3.85□□□□□ -1.79
VPS13C-209ENST00000560637 GAGE2BQ13066 116 aa3.85□□□□□ -1.79
VPS13C-209ENST00000560637 BAALCQ8WXS3 180 aa3.85□□□□□ -1.79
VPS13C-209ENST00000560637 Q9H8V8 135 aa3.85□□□□□ -1.79
VPS13C-209ENST00000560637 ZNF469Q96JG9 3925 aaPredicted RBP3.85□□□□□ -1.79
VPS13C-209ENST00000560637 SMIM13P0DJ93 91 aa3.84□□□□□ -1.79
VPS13C-209ENST00000560637 SEC11AP67812 179 aa3.84□□□□□ -1.79
VPS13C-209ENST00000560637 Q8NAQ8 132 aa3.84□□□□□ -1.79
VPS13C-209ENST00000560637 COX7A2LO14548 114 aa3.84□□□□□ -1.79
VPS13C-209ENST00000560637 TSHBP01222 138 aa3.84□□□□□ -1.79
VPS13C-209ENST00000560637 ESDP10768 282 aa3.84□□□□□ -1.79
VPS13C-209ENST00000560637 PLNP26678 52 aa3.84□□□□□ -1.79
VPS13C-209ENST00000560637 LINC00518Q8N0U6 118 aa3.84□□□□□ -1.79
VPS13C-209ENST00000560637 CDKN2A-AS1Q9UH64 79 aa3.84□□□□□ -1.79
VPS13C-209ENST00000560637 TENM3Q9P273 2699 aa3.84□□□□□ -1.8
VPS13C-209ENST00000560637 PKIAP61925 76 aa3.84□□□□□ -1.8
VPS13C-209ENST00000560637 KLK9Q2XQG4 91 aa3.84□□□□□ -1.8
VPS13C-209ENST00000560637 ZNF664Q8N3J9 261 aa3.84□□□□□ -1.8
VPS13C-209ENST00000560637 CHCHD10Q8WYQ3 142 aaPredicted RBP3.84□□□□□ -1.8
VPS13C-209ENST00000560637 DDTP30046 118 aa3.83□□□□□ -1.8
VPS13C-209ENST00000560637 IL17DQ8TAD2 202 aa3.83□□□□□ -1.8
VPS13C-209ENST00000560637 UBE2D3P61077 147 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms