RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 PDE6GP18545 87 aa5.95□□□□□ -1.46
USP3-211ENST00000559257 HAMPP81172 84 aa5.95□□□□□ -1.46
USP3-211ENST00000559257 KIAA0087Q14695 138 aa5.95□□□□□ -1.46
USP3-211ENST00000559257 SEM1Q6ZVN7 128 aa5.95□□□□□ -1.46
USP3-211ENST00000559257 FAM104AQ969W3 186 aa5.95□□□□□ -1.46
USP3-211ENST00000559257 MDFIQ99750 246 aa5.95□□□□□ -1.46
USP3-211ENST00000559257 TTTY12Q9BZ98 90 aa5.95□□□□□ -1.46
USP3-211ENST00000559257 MKI67P46013 3256 aaKnown RBP5.95□□□□□ -1.46
USP3-211ENST00000559257 LINC00313P59037 77 aa5.94□□□□□ -1.46
USP3-211ENST00000559257 RPL36AP83881 106 aaKnown RBP5.94□□□□□ -1.46
USP3-211ENST00000559257 Q75L30 129 aa5.94□□□□□ -1.46
USP3-211ENST00000559257 COL27A1Q8IZC6 1860 aaPredicted RBP5.94□□□□□ -1.46
USP3-211ENST00000559257 LINC00337Q8N6G1 96 aa5.94□□□□□ -1.46
USP3-211ENST00000559257 ITLN2Q8WWU7 325 aaPredicted RBP5.94□□□□□ -1.46
USP3-211ENST00000559257 RPL36ALQ969Q0 106 aaKnown RBP5.94□□□□□ -1.46
USP3-211ENST00000559257 CDC42SE1Q9NRR8 79 aa5.94□□□□□ -1.46
USP3-211ENST00000559257 LCE6AA0A183 80 aa5.94□□□□□ -1.46
USP3-211ENST00000559257 GNLYP22749 145 aa5.94□□□□□ -1.46
USP3-211ENST00000559257 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.94□□□□□ -1.46
USP3-211ENST00000559257 ZNRD1Q9P1U0 126 aa5.94□□□□□ -1.46
USP3-211ENST00000559257 CNTRLQ7Z7A1 2325 aa5.93□□□□□ -1.46
USP3-211ENST00000559257 PINLYPA6NC86 204 aa5.93□□□□□ -1.46
USP3-211ENST00000559257 LRCOL1A6NCL2 159 aa5.93□□□□□ -1.46
USP3-211ENST00000559257 RNASE3P12724 160 aaKnown RBP5.93□□□□□ -1.46
USP3-211ENST00000559257 IGHV3-38A0A0C4DH36 116 aa5.93□□□□□ -1.46
USP3-211ENST00000559257 MP68P56378 58 aa5.93□□□□□ -1.46
USP3-211ENST00000559257 SPINK14Q6IE38 97 aa5.93□□□□□ -1.46
USP3-211ENST00000559257 IGKV2-28A0A075B6P5 120 aa5.92□□□□□ -1.46
USP3-211ENST00000559257 M0QY20 66 aa5.92□□□□□ -1.46
USP3-211ENST00000559257 IGKV2D-28P01615 120 aa5.92□□□□□ -1.46
USP3-211ENST00000559257 PRR9Q5T870 116 aa5.92□□□□□ -1.46
USP3-211ENST00000559257 Q6ZTI0 123 aa5.92□□□□□ -1.46
USP3-211ENST00000559257 KLLNB2CW77 178 aa5.91□□□□□ -1.46
USP3-211ENST00000559257 K7EQG2 157 aa5.91□□□□□ -1.46
USP3-211ENST00000559257 LY6HO94772 140 aa5.91□□□□□ -1.46
USP3-211ENST00000559257 APELAP0DMC3 54 aa5.91□□□□□ -1.46
USP3-211ENST00000559257 F5H697 171 aa5.91□□□□□ -1.46
USP3-211ENST00000559257 SLPIP03973 132 aa5.91□□□□□ -1.46
USP3-211ENST00000559257 C9orf66Q5T8R8 295 aa5.91□□□□□ -1.46
USP3-211ENST00000559257 ZFAND2AQ8N6M9 145 aa5.91□□□□□ -1.46
USP3-211ENST00000559257 HIGD2AQ9BW72 106 aa5.91□□□□□ -1.46
USP3-211ENST00000559257 LY6G6DO95868 133 aa5.9□□□□□ -1.46
USP3-211ENST00000559257 GAFA1Q96PS6 74 aa5.9□□□□□ -1.47
USP3-211ENST00000559257 SND1-IT1Q9HBX3 110 aa5.9□□□□□ -1.47
USP3-211ENST00000559257 CDKN2A-AS1Q9UH64 79 aa5.9□□□□□ -1.47
USP3-211ENST00000559257 F8W735 103 aaPredicted RBP5.89□□□□□ -1.47
USP3-211ENST00000559257 IGKV3-15P01624 115 aa5.89□□□□□ -1.47
USP3-211ENST00000559257 ZCCHC13Q8WW36 166 aaKnown RBP5.89□□□□□ -1.47
USP3-211ENST00000559257 RNF5Q99942 180 aa5.89□□□□□ -1.47
USP3-211ENST00000559257 LOC101927531A0A1B0GV80 90 aa5.89□□□□□ -1.47
USP3-211ENST00000559257 CLPSL1A2RUU4 121 aa5.89□□□□□ -1.47
USP3-211ENST00000559257 C19orf54Q5BKX5 351 aa5.89□□□□□ -1.47
USP3-211ENST00000559257 Q8N814 137 aa5.89□□□□□ -1.47
USP3-211ENST00000559257 DEFB104AQ8WTQ1 72 aa5.89□□□□□ -1.47
USP3-211ENST00000559257 CDC42SE2Q9NRR3 84 aa5.89□□□□□ -1.47
USP3-211ENST00000559257 H3BQ85 93 aa5.88□□□□□ -1.47
USP3-211ENST00000559257 ELOF1P60002 83 aaKnown RBP5.88□□□□□ -1.47
USP3-211ENST00000559257 ASB16-AS1Q495Z4 193 aa5.88□□□□□ -1.47
USP3-211ENST00000559257 C9orf116Q5BN46 136 aaPredicted RBP5.88□□□□□ -1.47
USP3-211ENST00000559257 Q8N9P0 234 aaPredicted RBP5.88□□□□□ -1.47
USP3-211ENST00000559257 COL6A3P12111 3177 aa5.87□□□□□ -1.47
USP3-211ENST00000559257 IGLV11-55A0A075B6I3 123 aa5.87□□□□□ -1.47
USP3-211ENST00000559257 IGHV1-2P23083 117 aa5.87□□□□□ -1.47
USP3-211ENST00000559257 IGHV1-3A0A0C4DH29 117 aa5.87□□□□□ -1.47
USP3-211ENST00000559257 C3orf84H3BNL1 204 aa5.87□□□□□ -1.47
USP3-211ENST00000559257 MOBPQ13875 183 aa5.87□□□□□ -1.47
USP3-211ENST00000559257 RNASE13Q5GAN3 156 aaKnown RBP5.87□□□□□ -1.47
USP3-211ENST00000559257 C5orf42Q9H799 3197 aa5.87□□□□□ -1.47
USP3-211ENST00000559257 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.86□□□□□ -1.47
USP3-211ENST00000559257 A6NED7 52 aa5.86□□□□□ -1.47
USP3-211ENST00000559257 H0Y9J4 135 aa5.86□□□□□ -1.47
USP3-211ENST00000559257 NTM-AS1Q6ZSK4 140 aa5.86□□□□□ -1.47
USP3-211ENST00000559257 ZNF318Q5VUA4 2279 aa5.86□□□□□ -1.47
USP3-211ENST00000559257 A0A087X002 238 aa5.86□□□□□ -1.47
USP3-211ENST00000559257 IGLV1-44P01699 117 aa5.86□□□□□ -1.47
USP3-211ENST00000559257 FDCSPQ8NFU4 85 aa5.86□□□□□ -1.47
USP3-211ENST00000559257 SMIM1B2RUZ4 78 aa5.85□□□□□ -1.47
USP3-211ENST00000559257 ZNF843Q8N446 348 aa5.85□□□□□ -1.47
USP3-211ENST00000559257 PRR15LQ9BU68 103 aa5.85□□□□□ -1.47
USP3-211ENST00000559257 PATE3B3GLJ2 98 aa5.84□□□□□ -1.47
USP3-211ENST00000559257 NDUFB1O75438 58 aa5.84□□□□□ -1.47
USP3-211ENST00000559257 PRM2P04554 102 aa5.84□□□□□ -1.47
USP3-211ENST00000559257 KLK9Q9UKQ9 250 aa5.84□□□□□ -1.47
USP3-211ENST00000559257 PLCE1Q9P212 2302 aa5.84□□□□□ -1.47
USP3-211ENST00000559257 MUC4Q99102 2169 aa5.84□□□□□ -1.47
USP3-211ENST00000559257 IGHV4-31P0DP07 118 aa5.84□□□□□ -1.47
USP3-211ENST00000559257 DEFB114Q30KQ6 69 aa5.84□□□□□ -1.47
USP3-211ENST00000559257 C18orf65Q6ZTR6 163 aa5.84□□□□□ -1.47
USP3-211ENST00000559257 IGKV4-1P06312 121 aa5.83□□□□□ -1.48
USP3-211ENST00000559257 Q9BRP9 147 aa5.83□□□□□ -1.48
USP3-211ENST00000559257 LAMA2P24043 3122 aaKnown RBP5.83□□□□□ -1.48
USP3-211ENST00000559257 TRBV6-4A0A1B0GX49 114 aa5.82□□□□□ -1.48
USP3-211ENST00000559257 IGHV3-72A0A0B4J1Y9 119 aa5.82□□□□□ -1.48
USP3-211ENST00000559257 C19orf84I3L1E1 186 aa5.82□□□□□ -1.48
USP3-211ENST00000559257 CCL3L1P16619 93 aa5.82□□□□□ -1.48
USP3-211ENST00000559257 CHCHD7Q9BUK0 85 aa5.82□□□□□ -1.48
USP3-211ENST00000559257 DNAJC13O75165 2243 aa5.82□□□□□ -1.48
USP3-211ENST00000559257 IGLV3-9A0A075B6K5 115 aa5.81□□□□□ -1.48
USP3-211ENST00000559257 PLA2G1BP04054 148 aaKnown RBP5.81□□□□□ -1.48
USP3-211ENST00000559257 CCL18P55774 89 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms